Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Forward (+)

37931086 .. 37937321

Gene Structure 6236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG225700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGGTACCTTCGGGGCCGCCCAATCCAATTGGTGGTGCCCAGTCTGTTTCACCTTCACTCTTGCGTTCAAATTCTGGAATGCTTGGAGGTCAAAATGGTCCACTACCTTCTCAGTCAGCTTTTCCGTCGCTTGTCTCACCGCGTACTCAATTCAGTAACATGAACATGCTTGGAAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGCCTTTTGGAAATGGGATTCCAAATTCAGGGCTTTCTGGTCCTGGTAGCAGCCATCGTGGAGGTATTGATACTGGGGCTGAGTCCGATCCACTCTCTAGTGTTGGCAATGGAATGGGTTTCAATGCTCCTTCATCTTATAATGCATCAAACCTGGCTAATCCTGGTACATCTGGTCAAGGTCAGGGTCAGGGTCAACAATTTTCAAACCCTTCTGGTAATCAACTGTTGGCAGATCAACAACAGCAACAACTCGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAACAGTTCTCTGCCCCTCACAACACACAGCAGCAGCAGCAGCAACAGCAGCAATTTCAGGCAAGTCGAGGGAGCTTAGCTGGTGTTGGACAAGTCAAGTTGGAGCCCCAGTTGACCAATGATCAACATGGACAGCAGCAGCAGCAGTTGCAGTCTTTGAGAGGTCTTGGTCAAGTGAAAATGGAACCTCAACAACTTCAGAACATGAGAAACTTGCCGCCTGTAAAAGTGGAACCCCAGCATAATGATCAGTCATTGTATTTGCATCAACAACAGCAACAACAGCAGCAACAGCAACAACAGCAGTTACTCAGCATGTCAAGGCACTCTTCTCAAGCTACTGCCGCCCATATAAACCTTCTGCATCAGCAGAGATTCTTGCAGCTAACACAACAACACCAGCAACAGCAACTCTTAAAAGCAATGCCTCAGCCACGGCCCCAAGTACAGCAGCAATTTCCGCAACAGAATCTCCCTATGAGATCTCCTGCAAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAATAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGGCGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTATTTAAAATCAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGTGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATCGTGTTCTCTCCAGACTTGAAGATATGCTCTTGGGAGTTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAACTTGGGGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCTAATTTATCTATTCCAGACATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACCCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATACGTAAGGTGTCTACAGATATCAGAAGTGGTTAATAGTATGAAGGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACGAGTACTTCATCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAGCAACAGCAACAGCAAACGGTGGGCCAGAATTCAAATGACGCAAGCTCTGTGCAGGCCAATATGCAACTTGCTGTTAGTAATGGACCTAGTGGTATGGCTAGTGTAAATAACGTGAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTGGGTCTCCTCCATCAAAATTCCATGAATTCCAGGCAACAGAGTTCGATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCCATTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACTCAAGCAAATCCTTCTCCATTCCAGTCGCCAACACCCTCATCGAACAATCCATCCCAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTATCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCAGAAAATTATACACGACATGATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCTAGTAGCAACAACACAGGCATGAACGGTGGCAACTGTCTGTCGGGGAATGTCATGGGCAACAGTAACTCAGGTATGGGGGGTGGTGGATTTGGGAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATAAGAGCTGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTTGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATAGGGAGCCAGCTACTTAGTGGGCTTGGAGCGGTTAATGGGTTTAATAATCTTCAATTTGATTGGAAACATTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

913

Amino Acids

99.17

Weight (kDa)

8.83

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	341 - 595	1.4e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1283
AccB1I	GGYRCC	5 cut(s)	4, 35, 1283, 1473, 2213
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2117
AccBSI	CCGCTC	1 cut(s)	2693
AccI	GTMKAC	1 cut(s)	1702
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 140, 713, 840, 956, 1222, 2693
AclWI	GGATC	2 cut(s)	287, 2294
AcoI	YGGCCR	1 cut(s)	1153
AcsI	RAATTY	9 cut(s)	70, 229, 469, 1076, 1088, 1894, 2035, 2044, 2248
AcuI	CTGAAG	2 cut(s)	677, 1080
AcyI	GRCGYC	1 cut(s)	1474
AfaI	GTAC	8 cut(s)	6, 145, 373, 942, 1110, 1285, 1810, 2131
AfiI	CCNNNNNNNGG	5 cut(s)	32, 233, 1223, 2090, 2117
AgsI	TTSAA	8 cut(s)	69, 328, 411, 1076, 1232, 1444, 1899, 2717
AjnI	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1548, 1647, 2048, 2116
AleI	CACNNNNGTG	2 cut(s)	2015, 2238
AloI	GAACNNNNNNTCC	4 cut(s)	1973, 2005, 2180, 2212
Alw21I	GWGCWC	2 cut(s)	1018, 2321
Alw26I	GTCTC	3 cut(s)	139, 1751, 2027
Alw44I	GTGCAC	1 cut(s)	1014
AlwI	GGATC	2 cut(s)	287, 2294
AlwNI	CAGNNNCTG	1 cut(s)	1766
Ama87I	CYCGRG	2 cut(s)	458, 2631
AoxI	GGCC	6 cut(s)	14, 932, 1055, 1153, 1888, 1920
ApaLI	GTGCAC	1 cut(s)	1014
ApoI	RAATTY	9 cut(s)	70, 229, 469, 1076, 1088, 1894, 2035, 2044, 2248
Asp700I	GAANNNNTTC	1 cut(s)	2590
Asp718I	GGTACC	2 cut(s)	4, 1283
AspLEI	GCGC	2 cut(s)	1023, 1476
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 933, 1769, 1888, 1949
AsuC2I	CCSGG	1 cut(s)	1255
AsuHPI	GGTGA	4 cut(s)	42, 129, 2244, 2303
AsuII	TTCGAA	1 cut(s)	1420
AvaI	CYCGRG	2 cut(s)	458, 2631
AvaII	GGWCC	4 cut(s)	98, 245, 1769, 1949
AxyI	CCTNAGG	2 cut(s)	1179, 1512
BaeGI	GKGCMC	2 cut(s)	40, 1018
BanI	GGYRCC	5 cut(s)	4, 35, 1283, 1473, 2213
BanII	GRGCYC	2 cut(s)	603, 2321
BarI	GAAGNNNNNNTAC	2 cut(s)	1792, 1824
BauI	CACGAG	1 cut(s)	1317
BbsI	GAAGAC	2 cut(s)	183, 1068
Bbv12I	GWGCWC	2 cut(s)	1018, 2321
BbvCI	CCTCAGC	1 cut(s)	924
BccI	CCATC	5 cut(s)	267, 1403, 2037, 2119, 2203
BceAI	ACGGC	2 cut(s)	947, 1034
BciT130I	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1550, 1649, 2050, 2118
BciVI	GTATCC	1 cut(s)	2275
BclI	TGATCA	2 cut(s)	616, 742
BcnI	CCSGG	1 cut(s)	1255
BcoDI	GTCTC	3 cut(s)	139, 1751, 2027
BfaI	CTAG	5 cut(s)	303, 1953, 1965, 2127, 2436
BfmI	CTRYAG	2 cut(s)	1533, 1703
BfoI	RGCGCY	2 cut(s)	1024, 1477
BfuI	GTATCC	1 cut(s)	2275
BglII	AGATCT	1 cut(s)	977
BlpI	GCTNAGC	2 cut(s)	571, 1783
BmcAI	AGTACT	1 cut(s)	1810
Bme18I	GGWCC	4 cut(s)	98, 245, 1769, 1949
BmeT110I	CYCGRG	2 cut(s)	458, 2631
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 933, 1769, 1888, 1949
BmrI	ACTGGG	3 cut(s)	34, 288, 598
BmsI	GCATC	7 cut(s)	359, 769, 868, 1577, 1997, 2630, 2656
BmuI	ACTGGG	3 cut(s)	34, 288, 598
BpiI	GAAGAC	2 cut(s)	183, 1068
BpmI	CTGGAG	2 cut(s)	1102, 1419
Bpu10I	CCTNAGC	2 cut(s)	924, 2371
Bpu1102I	GCTNAGC	2 cut(s)	571, 1783
Bpu14I	TTCGAA	1 cut(s)	1420
BpuEI	CTTGAG	2 cut(s)	813, 2130
BpuMI	CCSGG	1 cut(s)	1255
BsaAI	YACGTR	1 cut(s)	1693
BsaHI	GRCGYC	1 cut(s)	1474
BsaI	GGTCTC	1 cut(s)	2027
BsaJI	CCNNGG	7 cut(s)	929, 1217, 1253, 1287, 1647, 2116, 2556
BsaXI	ACNNNNNCTCC	6 cut(s)	590, 620, 951, 981, 2521, 2551
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 233, 1223, 2090, 2117
Bse118I	RCCGGY	1 cut(s)	1155
Bse1I	ACTGG	7 cut(s)	40, 283, 604, 992, 1171, 1771, 2167
Bse21I	CCTNAGG	2 cut(s)	1179, 1512
Bse3DI	GCAATG	3 cut(s)	319, 924, 2586
BseBI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1550, 1649, 2050, 2118
BseDI	CCNNGG	7 cut(s)	929, 1217, 1253, 1287, 1647, 2116, 2556
BseGI	GGATG	5 cut(s)	1189, 1414, 1988, 2111, 2195
BseLI	CCNNNNNNNGG	5 cut(s)	32, 233, 1223, 2090, 2117
BseMI	GCAATG	3 cut(s)	319, 924, 2586
BseMII	CTCAG	9 cut(s)	125, 276, 820, 938, 1193, 1526, 2153, 2385, 2517
BseNI	ACTGG	7 cut(s)	40, 283, 604, 992, 1171, 1771, 2167
BseRI	GAGGAG	1 cut(s)	2015
BseSI	GKGCMC	2 cut(s)	40, 1018
BseYI	CCCAGC	1 cut(s)	732
BsgI	GTGCAG	2 cut(s)	1937, 2262
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1890, 1922
BshNI	GGYRCC	5 cut(s)	4, 35, 1283, 1473, 2213
BsiHKAI	GWGCWC	2 cut(s)	1018, 2321
BsiHKCI	CYCGRG	2 cut(s)	458, 2631
BsiSI	CCGG	2 cut(s)	1156, 1255
BslFI	GGGAC	2 cut(s)	1777, 2067
BslI	CCNNNNNNNGG	5 cut(s)	32, 233, 1223, 2090, 2117
BsmAI	GTCTC	3 cut(s)	139, 1751, 2027
BsmFI	GGGAC	2 cut(s)	1777, 2067
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1890, 1922
Bso31I	GGTCTC	1 cut(s)	2027
BsoBI	CYCGRG	2 cut(s)	458, 2631
Bsp119I	TTCGAA	1 cut(s)	1420
Bsp1286I	GDGCHC	4 cut(s)	40, 603, 1018, 2321
Bsp143I	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
Bsp1720I	GCTNAGC	2 cut(s)	571, 1783
Bsp19I	CCATGG	1 cut(s)	2556
BspACI	CCGC	7 cut(s)	17, 140, 713, 840, 956, 1222, 2693
BspANI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1890, 1922
BspCNI	CTCAG	9 cut(s)	124, 277, 819, 937, 1192, 1525, 2152, 2384, 2516
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1537
BspPI	GGATC	2 cut(s)	287, 2294
BspQI	GCTCTTC	1 cut(s)	1476
BspT104I	TTCGAA	1 cut(s)	1420
BspT107I	GGYRCC	5 cut(s)	4, 35, 1283, 1473, 2213
BspTNI	GGTCTC	1 cut(s)	2027
BsrBI	CCGCTC	1 cut(s)	2693
BsrDI	GCAATG	3 cut(s)	319, 924, 2586
BsrFI	RCCGGY	1 cut(s)	1155
BsrI	ACTGG	7 cut(s)	40, 283, 604, 992, 1171, 1771, 2167
BssAI	RCCGGY	1 cut(s)	1155
BssECI	CCNNGG	7 cut(s)	929, 1217, 1253, 1287, 1647, 2116, 2556
BssMI	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
BssNI	GRCGYC	1 cut(s)	1474
BssSI	CACGAG	1 cut(s)	1317
BssT1I	CCWWGG	2 cut(s)	1287, 2556
Bst2BI	CACGAG	1 cut(s)	1317
Bst2UI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1550, 1649, 2050, 2118
Bst4CI	ACNGT	8 cut(s)	432, 501, 1240, 1885, 2081, 2462, 2471, 2498
Bst6I	CTCTTC	2 cut(s)	829, 1476
BstACI	GRCGYC	1 cut(s)	1474
BstAPI	GCANNNNNTGC	2 cut(s)	493, 643
BstBAI	YACGTR	1 cut(s)	1693
BstBI	TTCGAA	1 cut(s)	1420
BstC8I	GCNNGC	8 cut(s)	1157, 1214, 1909, 1920, 2008, 2280, 2553, 2672
BstDSI	CCRYGG	2 cut(s)	929, 2556
BstF5I	GGATG	5 cut(s)	1189, 1414, 1988, 2111, 2195
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	1024, 1477
BstHHI	GCGC	2 cut(s)	1023, 1476
BstKTI	GATC	6 cut(s)	295, 442, 619, 745, 980, 2302
BstMAI	GTCTC	3 cut(s)	139, 1751, 2027
BstMBI	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
BstNI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1550, 1649, 2050, 2118
BstNSI	RCATGY	2 cut(s)	169, 814
BstSFI	CTRYAG	2 cut(s)	1533, 1703
BstSLI	GKGCMC	2 cut(s)	40, 1018
BstSNI	TACGTA	1 cut(s)	1693
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1068
BstX2I	RGATCY	1 cut(s)	977
BstXI	CCANNNNNNTGG	1 cut(s)	2366
BstYI	RGATCY	1 cut(s)	977
Bsu36I	CCTNAGG	2 cut(s)	1179, 1512
BsuI	GTATCC	1 cut(s)	2275
BsuRI	GGCC	6 cut(s)	16, 934, 1057, 1155, 1890, 1922
BtgI	CCRYGG	2 cut(s)	929, 2556
BtsCI	GGATG	5 cut(s)	1189, 1414, 1988, 2111, 2195
BtsIMutI	CAGTG	1 cut(s)	999
Cac8I	GCNNGC	8 cut(s)	1157, 1214, 1909, 1920, 2008, 2280, 2553, 2672
CaiI	CAGNNNCTG	1 cut(s)	1766
CfoI	GCGC	2 cut(s)	1023, 1476
Cfr10I	RCCGGY	1 cut(s)	1155
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 933, 1769, 1888, 1949
CseI	GACGC	2 cut(s)	1036, 1913
Csp6I	GTAC	8 cut(s)	5, 144, 372, 941, 1109, 1284, 1809, 2130
CviQI	GTAC	8 cut(s)	5, 144, 372, 941, 1109, 1284, 1809, 2130
DinI	GGCGCC	1 cut(s)	1475
DpnI	GATC	6 cut(s)	294, 441, 618, 744, 979, 2301
DpnII	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
DraI	TTTAAA	1 cut(s)	1264
EaeI	YGGCCR	1 cut(s)	1153
Eam1104I	CTCTTC	2 cut(s)	829, 1476
EarI	CTCTTC	2 cut(s)	829, 1476
Ecl136II	GAGCTC	1 cut(s)	2319
Eco105I	TACGTA	1 cut(s)	1693
Eco130I	CCWWGG	2 cut(s)	1287, 2556
Eco147I	AGGCCT	1 cut(s)	1057
Eco24I	GRGCYC	2 cut(s)	603, 2321
Eco31I	GGTCTC	1 cut(s)	2027
Eco32I	GATATC	1 cut(s)	1710
Eco47I	GGWCC	4 cut(s)	98, 245, 1769, 1949
Eco53kI	GAGCTC	1 cut(s)	2319
Eco57I	CTGAAG	2 cut(s)	677, 1080
Eco81I	CCTNAGG	2 cut(s)	1179, 1512
Eco88I	CYCGRG	2 cut(s)	458, 2631
EcoICRI	GAGCTC	1 cut(s)	2319
EcoRI	GAATTC	3 cut(s)	1076, 1894, 2044
EcoRII	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1548, 1647, 2048, 2116
EcoRV	GATATC	1 cut(s)	1710
EcoT14I	CCWWGG	2 cut(s)	1287, 2556
EcoT22I	ATGCAT	3 cut(s)	352, 1570, 2649
EcoT38I	GRGCYC	2 cut(s)	603, 2321
EgeI	GGCGCC	1 cut(s)	1475
EheI	GGCGCC	1 cut(s)	1475
ErhI	CCWWGG	2 cut(s)	1287, 2556
FalI	AAGNNNNNCTT	2 cut(s)	808, 840
FaqI	GGGAC	2 cut(s)	1777, 2067
FauI	CCCGC	1 cut(s)	1215
FbaI	TGATCA	2 cut(s)	616, 742
FblI	GTMKAC	1 cut(s)	1702
FokI	GGATG	5 cut(s)	1196, 1421, 1975, 2098, 2182
FriOI	GRGCYC	2 cut(s)	603, 2321
FspBI	CTAG	5 cut(s)	303, 1953, 1965, 2127, 2436
GlaI	GCGC	2 cut(s)	1022, 1475
GsaI	CCCAGC	1 cut(s)	736
GsuI	CTGGAG	2 cut(s)	1102, 1419
HaeII	RGCGCY	2 cut(s)	1024, 1477
HaeIII	GGCC	6 cut(s)	16, 934, 1057, 1155, 1890, 1922
HapII	CCGG	2 cut(s)	1156, 1255
HgaI	GACGC	2 cut(s)	1036, 1913
HhaI	GCGC	2 cut(s)	1023, 1476
Hin1I	GRCGYC	1 cut(s)	1474
Hin6I	GCGC	2 cut(s)	1021, 1474
HinP1I	GCGC	2 cut(s)	1021, 1474
HincII	GTYRAC	4 cut(s)	401, 609, 1415, 1523
HindII	GTYRAC	4 cut(s)	401, 609, 1415, 1523
HinfI	GANTC	9 cut(s)	223, 287, 463, 870, 964, 1422, 2107, 2143, 2309
HpaII	CCGG	2 cut(s)	1156, 1255
HphI	GGTGA	4 cut(s)	42, 129, 2244, 2303
Hpy166II	GTNNAC	9 cut(s)	101, 401, 609, 1016, 1415, 1523, 1703, 1981, 2540
Hpy188I	TCNGA	8 cut(s)	292, 468, 696, 1344, 1714, 1846, 2106, 2142
Hpy8I	GTNNAC	9 cut(s)	101, 401, 609, 1016, 1415, 1523, 1703, 1981, 2540
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	8 cut(s)	432, 501, 1240, 1885, 2081, 2462, 2471, 2498
HpyCH4IV	ACGT	2 cut(s)	1692, 1977
HpySE526I	ACGT	2 cut(s)	1692, 1977
Hsp92I	GRCGYC	1 cut(s)	1474
HspAI	GCGC	2 cut(s)	1021, 1474
KasI	GGCGCC	1 cut(s)	1473
KpnI	GGTACC	2 cut(s)	8, 1287
KroI	GCCGGC	1 cut(s)	1155
KroNI	GCCGGC	1 cut(s)	1157
Ksp22I	TGATCA	2 cut(s)	616, 742
Kzo9I	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
LguI	GCTCTTC	1 cut(s)	1476
LmnI	GCTCC	5 cut(s)	337, 567, 598, 2667, 2690
LweI	GCATC	7 cut(s)	359, 769, 868, 1577, 1997, 2630, 2656
MaeI	CTAG	5 cut(s)	303, 1953, 1965, 2127, 2436
MaeII	ACGT	2 cut(s)	1692, 1977
MaeIII	GTNAC	3 cut(s)	155, 801, 2498
MalI	GATC	6 cut(s)	294, 441, 618, 744, 979, 2301
MbiI	CCGCTC	1 cut(s)	2693
MboI	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	4 cut(s)	40, 603, 1018, 2321
Mly113I	GGCGCC	1 cut(s)	1474
MlyI	GAGTC	2 cut(s)	296, 2137
MmeI	TCCRAC	4 cut(s)	562, 576, 2379, 2593
Mph1103I	ATGCAT	3 cut(s)	352, 1570, 2649
MroNI	GCCGGC	1 cut(s)	1155
MroXI	GAANNNNTTC	1 cut(s)	2590
MseI	TTAA	9 cut(s)	201, 911, 1263, 1722, 2364, 2562, 2697, 2706, 2740
MslI	CAYNNNNRTG	5 cut(s)	164, 2015, 2238, 2348, 2453
MspI	CCGG	2 cut(s)	1156, 1255
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	9 cut(s)	249, 359, 369, 1005, 1218, 1550, 1649, 2050, 2118
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1157
NarI	GGCGCC	1 cut(s)	1474
NciI	CCSGG	1 cut(s)	1255
NcoI	CCATGG	1 cut(s)	2556
NdeII	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
NgoMIV	GCCGGC	1 cut(s)	1155
NmeAIII	GCCGAG	3 cut(s)	1123, 1609, 1778
NsiI	ATGCAT	3 cut(s)	352, 1570, 2649
NspI	RCATGY	2 cut(s)	169, 814
NspV	TTCGAA	1 cut(s)	1420
OliI	CACNNNNGTG	2 cut(s)	2015, 2238
PaeR7I	CTCGAG	2 cut(s)	458, 2631
PceI	AGGCCT	1 cut(s)	1057
PciSI	GCTCTTC	1 cut(s)	1476
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1157
PdmI	GAANNNNTTC	1 cut(s)	2590
PfeI	GAWTC	7 cut(s)	223, 463, 870, 964, 1422, 2107, 2309
PflFI	GACNNNGTC	1 cut(s)	2544
PflMI	CCANNNNNTGG	2 cut(s)	32, 2117
PleI	GAGTC	2 cut(s)	295, 2137
PluTI	GGCGCC	1 cut(s)	1477
PpsI	GAGTC	2 cut(s)	295, 2137
Ppu21I	YACGTR	1 cut(s)	1693
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2321
Psp6I	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1548, 1647, 2048, 2116
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	9 cut(s)	247, 357, 367, 1003, 1216, 1548, 1647, 2048, 2116
PspPI	GGNCC	7 cut(s)	14, 98, 245, 933, 1769, 1888, 1949
PstI	CTGCAG	1 cut(s)	1537
PstNI	CAGNNNCTG	1 cut(s)	1766
PsuI	RGATCY	1 cut(s)	977
PsyI	GACNNNGTC	1 cut(s)	2544
RsaI	GTAC	8 cut(s)	6, 145, 373, 942, 1110, 1285, 1810, 2131
RsaNI	GTAC	8 cut(s)	5, 144, 372, 941, 1109, 1284, 1809, 2130
RseI	CAYNNNNRTG	5 cut(s)	164, 2015, 2238, 2348, 2453
SacI	GAGCTC	1 cut(s)	2321
SapI	GCTCTTC	1 cut(s)	1476
SaqAI	TTAA	9 cut(s)	201, 911, 1263, 1722, 2364, 2562, 2697, 2706, 2740
Sau3AI	GATC	6 cut(s)	292, 439, 616, 742, 977, 2299
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 933, 1769, 1888, 1949
ScaI	AGTACT	1 cut(s)	1810
SchI	GAGTC	2 cut(s)	296, 2137
SduI	GDGCHC	4 cut(s)	40, 603, 1018, 2321
SfaNI	GCATC	7 cut(s)	359, 769, 868, 1577, 1997, 2630, 2656
SfcI	CTRYAG	2 cut(s)	1533, 1703
SfoI	GGCGCC	1 cut(s)	1475
Sfr274I	CTCGAG	2 cut(s)	458, 2631
SfuI	TTCGAA	1 cut(s)	1420
SinI	GGWCC	4 cut(s)	98, 245, 1769, 1949
SlaI	CTCGAG	2 cut(s)	458, 2631
SmiMI	CAYNNNNRTG	5 cut(s)	164, 2015, 2238, 2348, 2453
SmlI	CTYRAG	4 cut(s)	458, 828, 2145, 2631
SmoI	CTYRAG	4 cut(s)	458, 828, 2145, 2631
SnaBI	TACGTA	1 cut(s)	1693
SseBI	AGGCCT	1 cut(s)	1057
SsiI	CCGC	7 cut(s)	17, 140, 713, 840, 956, 1222, 2693
SspDI	GGCGCC	1 cut(s)	1473
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	5 cut(s)	303, 1953, 1965, 2127, 2436
SstI	GAGCTC	1 cut(s)	2321
StuI	AGGCCT	1 cut(s)	1057
StyI	CCWWGG	2 cut(s)	1287, 2556
TaaI	ACNGT	8 cut(s)	432, 501, 1240, 1885, 2081, 2462, 2471, 2498
TaiI	ACGT	2 cut(s)	1695, 1980
TaqI	TCGA	8 cut(s)	459, 562, 1420, 1495, 1798, 2063, 2186, 2632
TatI	WGTACW	3 cut(s)	940, 1808, 2129
TauI	GCSGC	3 cut(s)	19, 715, 842
TfiI	GAWTC	7 cut(s)	223, 463, 870, 964, 1422, 2107, 2309
Tru1I	TTAA	9 cut(s)	201, 911, 1263, 1722, 2364, 2562, 2697, 2706, 2740
Tru9I	TTAA	9 cut(s)	201, 911, 1263, 1722, 2364, 2562, 2697, 2706, 2740
TscAI	CASTG	1 cut(s)	999
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	999
Tth111I	GACNNNGTC	1 cut(s)	2544
Van91I	CCANNNNNTGG	2 cut(s)	32, 2117
VneI	GTGCAC	1 cut(s)	1014
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1769, 1949
XapI	RAATTY	9 cut(s)	70, 229, 469, 1076, 1088, 1894, 2035, 2044, 2248
XceI	RCATGY	2 cut(s)	169, 814
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2207, 2678
XhoI	CTCGAG	2 cut(s)	458, 2631
XmiI	GTMKAC	1 cut(s)	1702
XmnI	GAANNNNTTC	1 cut(s)	2590
XspI	CTAG	5 cut(s)	303, 1953, 1965, 2127, 2436
ZrmI	AGTACT	1 cut(s)	1810
Zsp2I	ATGCAT	3 cut(s)	352, 1570, 2649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.