Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

1605804 .. 1614433

Gene Structure 8630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1012000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGGTACCTTCGGGGTCGTCCACTCCAATTGGTGGTGCCCAGTCTGTTTCACCTTCACTTTTGCGTTCAAATTCTGGAATGTTGGGAGGTCAAGGTTCCCAGTCGGCTTTTCCCTCGCTTGCCTCACCCCGTACTCAATACGGTAATATGAATATGCTTGGCAATGTAGCCAATGTGTCTTCTCTCCTTAGTCAGTCGTATGGAAATGGAATTTCGAATCCGGGCCTCTCTGGTCCTGGTAGCAGCCAACGTGGAGTTATGGATACTGGTGCTGAATCGGATCCACTTTCTGGTGTTGGCAATGGAATGGGTTTCAATGCACCTTCTTCATCATATGGTGCATCAAACATGGCTAATCCTGGTACGTCGGGTCAAGGGCAAGGGCAACAATTTTCAAACCCTCCTGGTAACCAACTGTTGACAGAACAACAGCAGCAGCAACTTGAAACACAGAATTTCCAGCATGGTCAGCAGCCAATGCAACAGTTCTCATCCCCTCACAATACACAGCAGCAGCAACACCAATTTCAGGCTATTCGAGGAGGCTTAGCTGGTGTTGGGTCGGTAAAGTTAGAGCCCCAATTGACAAATGATCAACATGGACAGCAGCAGCAGTTGCAGTCTTTAAGGAGTCTTCCAGTGAAAATGGAACCACAGCAACTTCAAACAATGAGGAGCTTGCCACCTGTAAAATTGGAACCCCAACATTCCGATCAGCCATTGTTTTTGCATCAACAGCAGCAACAACAACAGCAACAACAAATCCTCCACATGTCAAGGCAGTCTTCTCAGAATGCCCAGATGAACATTATGCATCAGCAGAGATTATTGCAGTTACAACAACACCATCAACAGCAACATAACCAGCAACAGCAACAACACCAGCAACACCAGCAACACCAGCAACACCAGCAGCAGCAATTCTTGAAAGCAATACCTCAACAGCGCCCCCAATTACAGCAGCAGTTTCCACAGCAGAATCTGCCCATGAGATCTCCTGCAAAACCAGTATATGAGCCTGGAATGTGTGCTCGGCGTTTGACACATTATATGTATCAGCAACAACATAGGCCTGAAGACAACAACATTGAGTTCTGGAGAAAATTTGTTGCTGAATATTTTGTACCCCATGCGAAGAAGAAGTGGTGTGTTTCTATGTATGGAACTGGCCGACAAACAACTGGCGTTTTTCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCGACTGTTGAGGTTCTTCCCCGGCTTTTTAAAATCAAGTATGAAAGTGGTACTTTGGAGGAGCTTCTTTATGTTGATATGCCGCGTGAGTATCATAATTCATCTGGCCAGATTGTGTTAGACTATGCTAAAGCGATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGGGATGGTCAACTTCGGATAGTATTCTCTCCAGATCTGAAGATATGCTCTTGGGAATTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAGCTTGGTGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCCAACATATCTCTTCCAGAGATACAAAATAATTGTAATATGTTTGTATCGTCAGCTCGACAGTTGGCAAAAACCTTGGAAGTGCCATTAGTAAATGATTTAGGTTATACAAAGCGATATGTAAGGTGTCTTCAGATATCAGAAGTAGTTAATAGTATGAAAGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTGGCCAAGTTTCCTCGAAGGACGAGTGCTTCGTCTGGCTTTCACAGTCGAGCACAGCAGTCCGAGGAGCAAATGCAGCAGCAACAGCAACAACAAACGATCGGCCAGAATTCAAACGGAGATCCAGGCTCTGTCCAGGCCGCTGCTACACAAATTGCTGTCAGTAATGGTATTGCGAGTGTAAATAATGCTCCAAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTTGGGCTCCTCCATCAGAATTCAATGAATTCCAGACAGCAAAGTTCTATGAATAACGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGTTTCTGCTAGTGCAATCCCGCAGATGCAACCAAACTCTTCTCCATTCCAGTCACCAACACCCTCATCAAATAATCCTTCACAAACATCTCATGGTGCCAATCACATGAGTACAGCAAATTCACCAGCAAATATATCCGTGCAACAGCCAACCCTATCTGGCGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCAGAAACTTATACACGAAATGATGATGTCCAACCAACTTAACGGCCCAGGTAGTATGGTCGGTGCTGGTTCTTTGGGAAACGATGTGAAAAACGTGAATGGGATTTTGTCAACAAGCAACAACACAGGATTGAACGGCATGACTAACAATAGCTCGGGCATTGGGGGTGCTGGATTTGGGAGTATGGGTGGCGGACTTGGTCAGCAGCCTGCCATGGCGAATGGAATAAGAGCAGCAATGGGAAATAATTCTGTTATGAATGGAAGGATCGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAGCAACAGGATCTGGGGAACCAGTTACTTAGTGGGCTTGGAGCGGTGAACGGTTTTAATAATATTCAATTTGATTGGAAACATTCTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

909

Amino Acids

99.13

Weight (kDa)

8.95

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	346 - 600	4.7e-68	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	4 cut(s)	4, 35, 1488, 2225
AccB7I	CCANNNNNTGG	2 cut(s)	32, 290
AccBSI	CCGCTC	1 cut(s)	2678
AccII	CGCG	1 cut(s)	1333
AciI	CCGC	5 cut(s)	1331, 1938, 2150, 2517, 2678
AclWI	GGATC	6 cut(s)	275, 288, 1913, 2294, 2600, 2652
AcoI	YGGCCR	4 cut(s)	1168, 1354, 1800, 1900
AcsI	RAATTY	9 cut(s)	70, 210, 454, 1103, 1475, 1906, 2047, 2056, 2248
AcuI	CTGAAG	3 cut(s)	1095, 1478, 1703
AcyI	GRCGYC	1 cut(s)	1489
AfaI	GTAC	6 cut(s)	6, 133, 364, 1125, 1300, 2242
AfiI	CCNNNNNNNGG	6 cut(s)	32, 290, 529, 1238, 2031, 2102
AflIII	ACRYGT	1 cut(s)	771
AjnI	CCWGG	9 cut(s)	235, 358, 403, 1018, 1231, 1563, 1921, 1932, 2371
AloI	GAACNNNNNNTCC	2 cut(s)	2097, 2129
Alw21I	GWGCWC	3 cut(s)	1033, 1852, 2321
Alw26I	GTCTC	1 cut(s)	1766
AlwI	GGATC	6 cut(s)	275, 288, 1913, 2294, 2600, 2652
AlwNI	CAGNNNCTG	4 cut(s)	982, 1781, 1928, 2647
Ama87I	CYCGRG	2 cut(s)	2479, 2613
AoxI	GGCC	8 cut(s)	223, 1070, 1168, 1354, 1800, 1900, 1935, 2368
ApoI	RAATTY	9 cut(s)	70, 210, 454, 1103, 1475, 1906, 2047, 2056, 2248
ArsI	GACNNNNNNTTYG	2 cut(s)	1810, 1842
Asp700I	GAANNNNTTC	1 cut(s)	2572
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	948, 1491
AspS9I	GGNCC	4 cut(s)	223, 233, 1784, 2369
AsuC2I	CCSGG	2 cut(s)	222, 1270
AsuHPI	GGTGA	5 cut(s)	42, 117, 2175, 2244, 2692
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	2 cut(s)	2479, 2613
AvaII	GGWCC	2 cut(s)	233, 1784
AxyI	CCTNAGG	2 cut(s)	1194, 1527
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	2 cut(s)	1356, 1802
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	4 cut(s)	4, 35, 1488, 2225
BanII	GRGCYC	3 cut(s)	579, 2037, 2321
BarI	GAAGNNNNNNTAC	2 cut(s)	1701, 1733
BbsI	GAAGAC	5 cut(s)	171, 626, 777, 1083, 1709
Bbv12I	GWGCWC	3 cut(s)	1033, 1852, 2321
BccI	CCATC	4 cut(s)	855, 1418, 2049, 2131
BceAI	ACGGC	2 cut(s)	2383, 2476
BciT130I	CCWGG	9 cut(s)	237, 360, 405, 1020, 1233, 1565, 1923, 1934, 2373
BciVI	GTATCC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	2 cut(s)	222, 1270
BcoDI	GTCTC	1 cut(s)	1766
BfaI	CTAG	1 cut(s)	2139
BfmI	CTRYAG	1 cut(s)	1548
BfoI	RGCGCY	2 cut(s)	949, 1492
BfuI	GTATCC	1 cut(s)	256
BglII	AGATCT	2 cut(s)	992, 1453
BlpI	GCTNAGC	1 cut(s)	547
Bme18I	GGWCC	2 cut(s)	233, 1784
BmeT110I	CYCGRG	2 cut(s)	2479, 2613
BmgT120I	GGNCC	4 cut(s)	223, 233, 1784, 2369
BmrI	ACTGGG	2 cut(s)	34, 94
BmsI	GCATC	8 cut(s)	350, 739, 823, 1592, 2009, 2145, 2612, 2638
BmuI	ACTGGG	2 cut(s)	34, 94
BpiI	GAAGAC	5 cut(s)	171, 626, 777, 1083, 1709
BpmI	CTGGAG	2 cut(s)	1117, 1434
Bpu1102I	GCTNAGC	1 cut(s)	547
Bpu14I	TTCGAA	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	222, 1270
BsaHI	GRCGYC	1 cut(s)	1489
BsaJI	CCNNGG	6 cut(s)	1232, 1268, 1662, 1860, 2371, 2538
BsaXI	ACNNNNNCTCC	4 cut(s)	750, 780, 2497, 2527
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 290, 529, 1238, 2031, 2102
Bse21I	CCTNAGG	2 cut(s)	1194, 1527
Bse3DI	GCAATG	3 cut(s)	169, 307, 2568
BseBI	CCWGG	9 cut(s)	237, 360, 405, 1020, 1233, 1565, 1923, 1934, 2373
BseDI	CCNNGG	6 cut(s)	1232, 1268, 1662, 1860, 2371, 2538
BseGI	GGATG	6 cut(s)	491, 1204, 1429, 1586, 2000, 2123
BseLI	CCNNNNNNNGG	6 cut(s)	32, 290, 529, 1238, 2031, 2102
BseMI	GCAATG	3 cut(s)	169, 307, 2568
BseMII	CTCAG	3 cut(s)	803, 1208, 1541
BseRI	GAGGAG	5 cut(s)	555, 688, 1322, 1877, 2027
BseSI	GKGCMC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	1333
Bsh1285I	CGRYCG	1 cut(s)	1899
BshFI	GGCC	8 cut(s)	225, 1072, 1170, 1356, 1802, 1902, 1937, 2370
BshNI	GGYRCC	4 cut(s)	4, 35, 1488, 2225
BsiEI	CGRYCG	1 cut(s)	1899
BsiHKAI	GWGCWC	3 cut(s)	1033, 1852, 2321
BsiHKCI	CYCGRG	2 cut(s)	2479, 2613
BsiSI	CCGG	2 cut(s)	221, 1270
BslFI	GGGAC	2 cut(s)	1792, 2079
BslI	CCNNNNNNNGG	6 cut(s)	32, 290, 529, 1238, 2031, 2102
BsmAI	GTCTC	1 cut(s)	1766
BsmFI	GGGAC	2 cut(s)	1792, 2079
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	8 cut(s)	225, 1072, 1170, 1356, 1802, 1902, 1937, 2370
BsoBI	CYCGRG	2 cut(s)	2479, 2613
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	6 cut(s)	40, 579, 1033, 1852, 2037, 2321
Bsp1720I	GCTNAGC	1 cut(s)	547
Bsp19I	CCATGG	1 cut(s)	2538
BspACI	CCGC	5 cut(s)	1331, 1938, 2150, 2517, 2678
BspANI	GGCC	8 cut(s)	225, 1072, 1170, 1356, 1802, 1902, 1937, 2370
BspCNI	CTCAG	3 cut(s)	802, 1207, 1540
BspFNI	CGCG	1 cut(s)	1333
BspMAI	CTGCAG	1 cut(s)	1552
BspPI	GGATC	6 cut(s)	275, 288, 1913, 2294, 2600, 2652
BspQI	GCTCTTC	1 cut(s)	1491
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	4 cut(s)	4, 35, 1488, 2225
BsrBI	CCGCTC	1 cut(s)	2678
BsrDI	GCAATG	3 cut(s)	169, 307, 2568
BssECI	CCNNGG	6 cut(s)	1232, 1268, 1662, 1860, 2371, 2538
BssNI	GRCGYC	1 cut(s)	1489
BssT1I	CCWWGG	2 cut(s)	1662, 2538
Bst2UI	CCWGG	9 cut(s)	237, 360, 405, 1020, 1233, 1565, 1923, 1934, 2373
Bst4CI	ACNGT	9 cut(s)	143, 417, 486, 1211, 1255, 1650, 1844, 2093, 2687
Bst6I	CTCTTC	3 cut(s)	1491, 1605, 2173
BstACI	GRCGYC	1 cut(s)	1489
BstAPI	GCANNNNNTGC	3 cut(s)	478, 616, 982
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	5 cut(s)	120, 680, 1229, 2020, 2535
BstDEI	CTNAG	6 cut(s)	188, 547, 789, 1194, 1527, 2663
BstDSI	CCRYGG	1 cut(s)	2538
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	6 cut(s)	491, 1204, 1429, 1586, 2000, 2123
BstFNI	CGCG	1 cut(s)	1333
BstH2I	RGCGCY	2 cut(s)	949, 1492
BstHHI	GCGC	2 cut(s)	948, 1491
BstMAI	GTCTC	1 cut(s)	1766
BstMCI	CGRYCG	1 cut(s)	1899
BstNI	CCWGG	9 cut(s)	237, 360, 405, 1020, 1233, 1565, 1923, 1934, 2373
BstNSI	RCATGY	1 cut(s)	775
BstPI	GGTNACC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	1548
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	1333
BstV2I	GAAGAC	5 cut(s)	171, 626, 777, 1083, 1709
BstX2I	RGATCY	5 cut(s)	280, 992, 1453, 1918, 2644
BstYI	RGATCY	5 cut(s)	280, 992, 1453, 1918, 2644
Bsu36I	CCTNAGG	2 cut(s)	1194, 1527
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	8 cut(s)	225, 1072, 1170, 1356, 1802, 1902, 1937, 2370
BtgI	CCRYGG	1 cut(s)	2538
BtsCI	GGATG	6 cut(s)	491, 1204, 1429, 1586, 2000, 2123
BtsIMutI	CAGTG	2 cut(s)	645, 1207
Cac8I	GCNNGC	5 cut(s)	120, 680, 1229, 2020, 2535
CaiI	CAGNNNCTG	4 cut(s)	982, 1781, 1928, 2647
CfoI	GCGC	2 cut(s)	948, 1491
Cfr13I	GGNCC	4 cut(s)	223, 233, 1784, 2369
Csp6I	GTAC	6 cut(s)	5, 132, 363, 1124, 1299, 2241
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviQI	GTAC	6 cut(s)	5, 132, 363, 1124, 1299, 2241
DdeI	CTNAG	6 cut(s)	188, 547, 789, 1194, 1527, 2663
DinI	GGCGCC	1 cut(s)	1490
DraI	TTTAAA	1 cut(s)	1279
EaeI	YGGCCR	4 cut(s)	1168, 1354, 1800, 1900
Eam1104I	CTCTTC	3 cut(s)	1491, 1605, 2173
EarI	CTCTTC	3 cut(s)	1491, 1605, 2173
EciI	GGCGGA	1 cut(s)	2532
Ecl136II	GAGCTC	1 cut(s)	2319
Eco130I	CCWWGG	2 cut(s)	1662, 2538
Eco147I	AGGCCT	1 cut(s)	1072
Eco24I	GRGCYC	3 cut(s)	579, 2037, 2321
Eco32I	GATATC	1 cut(s)	1725
Eco47I	GGWCC	2 cut(s)	233, 1784
Eco53kI	GAGCTC	1 cut(s)	2319
Eco57I	CTGAAG	3 cut(s)	1095, 1478, 1703
Eco81I	CCTNAGG	2 cut(s)	1194, 1527
Eco88I	CYCGRG	2 cut(s)	2479, 2613
Eco91I	GGTNACC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	2319
EcoO65I	GGTNACC	1 cut(s)	407
EcoRI	GAATTC	3 cut(s)	1906, 2047, 2056
EcoRII	CCWGG	9 cut(s)	235, 358, 403, 1018, 1231, 1563, 1921, 1932, 2371
EcoRV	GATATC	1 cut(s)	1725
EcoT14I	CCWWGG	2 cut(s)	1662, 2538
EcoT22I	ATGCAT	3 cut(s)	816, 1585, 2631
EcoT38I	GRGCYC	3 cut(s)	579, 2037, 2321
EgeI	GGCGCC	1 cut(s)	1490
EheI	GGCGCC	1 cut(s)	1490
ErhI	CCWWGG	2 cut(s)	1662, 2538
FalI	AAGNNNNNCTT	4 cut(s)	769, 801, 1285, 1317
FaqI	GGGAC	2 cut(s)	1792, 2079
FauI	CCCGC	1 cut(s)	2157
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	6 cut(s)	478, 1211, 1436, 1573, 1987, 2110
FriOI	GRGCYC	3 cut(s)	579, 2037, 2321
FspBI	CTAG	1 cut(s)	2139
GlaI	GCGC	2 cut(s)	947, 1490
GsuI	CTGGAG	2 cut(s)	1117, 1434
HaeII	RGCGCY	2 cut(s)	949, 1492
HaeIII	GGCC	8 cut(s)	225, 1072, 1170, 1356, 1802, 1902, 1937, 2370
HapII	CCGG	2 cut(s)	221, 1270
HhaI	GCGC	2 cut(s)	948, 1491
Hin1I	GRCGYC	1 cut(s)	1489
Hin6I	GCGC	2 cut(s)	946, 1489
HinP1I	GCGC	2 cut(s)	946, 1489
HincII	GTYRAC	3 cut(s)	420, 1430, 2436
HindII	GTYRAC	3 cut(s)	420, 1430, 2436
HinfI	GANTC	6 cut(s)	217, 275, 631, 979, 2119, 2309
HpaII	CCGG	2 cut(s)	221, 1270
HphI	GGTGA	5 cut(s)	42, 117, 2175, 2244, 2692
Hpy166II	GTNNAC	5 cut(s)	21, 420, 1430, 2436, 2683
Hpy8I	GTNNAC	5 cut(s)	21, 420, 1430, 2436, 2683
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	6 cut(s)	18, 63, 333, 1809, 2217, 2583
HpyCH4III	ACNGT	9 cut(s)	143, 417, 486, 1211, 1255, 1650, 1844, 2093, 2687
HpyCH4IV	ACGT	3 cut(s)	250, 365, 2418
HpyF3I	CTNAG	6 cut(s)	188, 547, 789, 1194, 1527, 2663
HpySE526I	ACGT	3 cut(s)	250, 365, 2418
Hsp92I	GRCGYC	1 cut(s)	1489
HspAI	GCGC	2 cut(s)	946, 1489
KasI	GGCGCC	1 cut(s)	1488
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	1491
LmnI	GCTCC	6 cut(s)	675, 1309, 1864, 1993, 2040, 2675
LweI	GCATC	8 cut(s)	350, 739, 823, 1592, 2009, 2145, 2612, 2638
MaeI	CTAG	1 cut(s)	2139
MaeII	ACGT	3 cut(s)	250, 365, 2418
MaeIII	GTNAC	4 cut(s)	407, 834, 2181, 2658
MbiI	CCGCTC	1 cut(s)	2678
MfeI	CAATTG	2 cut(s)	27, 581
MflI	RGATCY	5 cut(s)	280, 992, 1453, 1918, 2644
MhlI	GDGCHC	6 cut(s)	40, 579, 1033, 1852, 2037, 2321
MlsI	TGGCCA	2 cut(s)	1356, 1802
MluNI	TGGCCA	2 cut(s)	1356, 1802
Mly113I	GGCGCC	1 cut(s)	1489
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	2 cut(s)	1614, 2379
Mox20I	TGGCCA	2 cut(s)	1356, 1802
Mph1103I	ATGCAT	3 cut(s)	816, 1585, 2631
MroXI	GAANNNNTTC	1 cut(s)	2572
MscI	TGGCCA	2 cut(s)	1356, 1802
MseI	TTAA	5 cut(s)	626, 1278, 1737, 2364, 2691
Msp20I	TGGCCA	2 cut(s)	1356, 1802
MspA1I	CMGCKG	1 cut(s)	1940
MspI	CCGG	2 cut(s)	221, 1270
MunI	CAATTG	2 cut(s)	27, 581
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	9 cut(s)	237, 360, 405, 1020, 1233, 1565, 1923, 1934, 2373
MvnI	CGCG	1 cut(s)	1333
NarI	GGCGCC	1 cut(s)	1489
NciI	CCSGG	2 cut(s)	222, 1270
NcoI	CCATGG	1 cut(s)	2538
NdeI	CATATG	1 cut(s)	334
NmeAIII	GCCGAG	2 cut(s)	1012, 1793
NmuCI	GTSAC	1 cut(s)	2181
NsiI	ATGCAT	3 cut(s)	816, 1585, 2631
NspI	RCATGY	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	2613
PceI	AGGCCT	1 cut(s)	1072
PciI	ACATGT	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	1491
PcsI	WCGNNNNNNNCGW	1 cut(s)	1826
PctI	GAATGC	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	2572
PfeI	GAWTC	5 cut(s)	217, 275, 979, 2119, 2309
PflFI	GACNNNGTC	1 cut(s)	2523
PflMI	CCANNNNNTGG	2 cut(s)	32, 290
Ple19I	CGATCG	1 cut(s)	1899
PleI	GAGTC	1 cut(s)	639
PluTI	GGCGCC	1 cut(s)	1492
PpsI	GAGTC	1 cut(s)	639
PscI	ACATGT	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	2321
Psp6I	CCWGG	9 cut(s)	235, 358, 403, 1018, 1231, 1563, 1921, 1932, 2371
PspEI	GGTNACC	1 cut(s)	407
PspGI	CCWGG	9 cut(s)	235, 358, 403, 1018, 1231, 1563, 1921, 1932, 2371
PspPI	GGNCC	4 cut(s)	223, 233, 1784, 2369
PstI	CTGCAG	1 cut(s)	1552
PstNI	CAGNNNCTG	4 cut(s)	982, 1781, 1928, 2647
PsuI	RGATCY	5 cut(s)	280, 992, 1453, 1918, 2644
PsyI	GACNNNGTC	1 cut(s)	2523
PvuI	CGATCG	1 cut(s)	1899
RsaI	GTAC	6 cut(s)	6, 133, 364, 1125, 1300, 2242
RsaNI	GTAC	6 cut(s)	5, 132, 363, 1124, 1299, 2241
SacI	GAGCTC	1 cut(s)	2321
SapI	GCTCTTC	1 cut(s)	1491
SaqAI	TTAA	5 cut(s)	626, 1278, 1737, 2364, 2691
Sau96I	GGNCC	4 cut(s)	223, 233, 1784, 2369
SchI	GAGTC	1 cut(s)	640
SduI	GDGCHC	6 cut(s)	40, 579, 1033, 1852, 2037, 2321
SfaNI	GCATC	8 cut(s)	350, 739, 823, 1592, 2009, 2145, 2612, 2638
SfcI	CTRYAG	1 cut(s)	1548
SfoI	GGCGCC	1 cut(s)	1490
Sfr274I	CTCGAG	1 cut(s)	2613
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	2 cut(s)	233, 1784
SlaI	CTCGAG	1 cut(s)	2613
SmlI	CTYRAG	1 cut(s)	2613
SmoI	CTYRAG	1 cut(s)	2613
SseBI	AGGCCT	1 cut(s)	1072
SsiI	CCGC	5 cut(s)	1331, 1938, 2150, 2517, 2678
SspDI	GGCGCC	1 cut(s)	1488
SspI	AATATT	2 cut(s)	1118, 2698
SspMI	CTAG	1 cut(s)	2139
SstI	GAGCTC	1 cut(s)	2321
StuI	AGGCCT	1 cut(s)	1072
StyI	CCWWGG	2 cut(s)	1662, 2538
TaaI	ACNGT	9 cut(s)	143, 417, 486, 1211, 1255, 1650, 1844, 2093, 2687
TaiI	ACGT	3 cut(s)	253, 368, 2421
TaqI	TCGA	7 cut(s)	215, 538, 1510, 1645, 1813, 1846, 2614
TatI	WGTACW	1 cut(s)	2240
TauI	GCSGC	2 cut(s)	1333, 1940
TfiI	GAWTC	5 cut(s)	217, 275, 979, 2119, 2309
Tru1I	TTAA	5 cut(s)	626, 1278, 1737, 2364, 2691
Tru9I	TTAA	5 cut(s)	626, 1278, 1737, 2364, 2691
TscAI	CASTG	2 cut(s)	645, 1214
TseFI	GTSAC	1 cut(s)	2181
Tsp45I	GTSAC	1 cut(s)	2181
TspGWI	ACGGA	3 cut(s)	1929, 2257, 2712
TspRI	CASTG	2 cut(s)	645, 1214
Tth111I	GACNNNGTC	1 cut(s)	2523
Van91I	CCANNNNNTGG	2 cut(s)	32, 290
VpaK11BI	GGWCC	2 cut(s)	233, 1784
XapI	RAATTY	9 cut(s)	70, 210, 454, 1103, 1475, 1906, 2047, 2056, 2248
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2663
XhoI	CTCGAG	1 cut(s)	2613
XmnI	GAANNNNTTC	1 cut(s)	2572
XspI	CTAG	1 cut(s)	2139
Zsp2I	ATGCAT	3 cut(s)	816, 1585, 2631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.