Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

29374573 .. 29380815

Gene Structure 6243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGTACCTTCGGGGCCGCCCAATCCAATTGGTGGTGCCCAGTCTGTTTCACCTTCGCTCTTGCGTTCAAATTCTGGAATGCTTGGAGGTCAAAATGGTCCACTACCTTCTCAGTCAGCTTTTCCGTCGCTTGTCTCACCGCGTAATCAATTCGGTAACATGAACATGCTTGGAAATGTAGCCAATGTGTCTTCTCTCCTTAATCAGTCTTTTGGAAATGGGATTCCGAATTCAGGGCTTTCTGGTCCTGGTAGCAGCCATCGTGGAGGTATTGATACTGGGGCCGAGTCCGATCCACTTTCTAGTGTTGGCAATGGAATGGGTTTCAATGCCCCTTCATCTTATAATGCATCAAACCTGCCTAATCCTGGTACATCTGGTCAAGGTCAGGGTCAGGGTCAGGGTCAACAATTTTCAAACCCTTCTGGTAATCAACTGTTGGCAGATCAACAACAGCAACAACTCGAGAATCAGAATTTTCAGCATAGTCAGCAGCAAATGCAGCAGTTCTCTGCCCCTCACAACACACAGCAGCAGCAGCAGCAACAGCAATTTCAGGCAATTCGAGGGAGCTTAGCTGGTGTTGGACAAGTCAAGCTGGAGCCCCACTTGACAAATGATCAACATGGACAGCAGCAGCAGCAGTTGCAGTCTTTGAGAGGTCTTGGTCAAGTGAAAATGGAACCTCAACAACTTCAGAACATGAGAAACTTGCCGCCTGTAAAATTGGAACCCCAGCATAATGATCAGTCATTGTATTTGCATCAACAACAGCAACAACAGCAGCAACAGCAGCAACAGCAACAACAGCAGTTACTCAACATGTCAAGGCACTCTTCTCAAGCAGCTGCTGCCCATATAAGCCTACTGCAACAGCAGAGATTCTTGCACCTAACGCAACAACACCAGCAACAGCAACTCTTAAAAGCAATGCCTCAGCCACGGCCCCAAGTACAGCAGCAATTTCCGCAACAGAATCTCCCTATGAGATCTCCTGCAAAACCAGTGTATGAACCTGGAATGTGTGCACGGCGCTTGACGCATTATATGTATCAGCAACAACATAGGCCTGAAGACAATAATATTGAATTCTGGAGAAAATTTGTTGCCGAGTATTTTGTACCTCATGCCAAGAAGAAGTGGTGTGTTTCTATGTATGGAAGTGGCCGGCAGACAACTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATATGCAATCGCAAGCCTGGGCGGGGCTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTATTTAAAATCAAGTATGAAAGTGGTACCTTGGAGGAACTTCTGTATGTTGATATGCCTCGTGAGTATCATAATTCATCTGGTCAGATTGTGCTGGACTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGGGATGGTCAACTTCGAATCGTGTTCTCTCCAGACTTGAAGATATGCTCTTGGGAGTTTTGTGCAAGGCGCCATGAAGAACTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAACTTGGGGCTGCAGCTCAAAAATACCAGGCTGCTACTCAAAATGCATCATCTAATTTATCTATCCCAGACATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGGCAGTTGGCAAAAACCCTGGAAGTGCCATTAGTAAATGATTTAGGCTATACAAAGAGATACGTAAGGTGTCTACAGATATCTGAAGTGGTTAATAGTATGAAGGACTTGATTGATTACAGCCGAGAGACAGGGACTGGACCTATGGAGAGCTTAGCCAAGTTTCCTCGAAGGACGAGTACTTCATCTGGGTTTCACAATCAAGCACAGCAGTCTGATGAACAAATGCAGCAGCAACAGCAACAGCAAACGGTGGGCCAGAATTCAAATGACGCAAGCTCTGTGCAGGCCAATATGCAACTTGCTGTTAGTAATGGACCTAGTGGTATGGCTAGTGTAAATAACGTGAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTGGGTCTCCTCCATCAAAATTCCATGAATTCCAGGCAACAGGGTTCAATGAATAATGCAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGGTTCTTCTAGTACAATCCCTCAGACTCAAGCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCGAACAATCCATCCCAAACATCTCATGGTGCCTTGACAGCTACCAATCACATGAGTGCAGCAAATTCACCAGCAAATGTGTCCATGCAACAGCCAGCCCTTTCTGGTGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCAGAAAATTATACACGACATGATGATGTCCAACCAGCTTAATGGCTCAGGTAGTATGGTTGGTGTGGGTTCTCTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCTAGTAGCAACAACACAGGCATGAACGGTGGCAACTGTCTGTCGGGGAATGTCATGGGCAACAGTAACTCAGGTATGGGGGGTGGTGGATTTGGGAGTATGGGTGGACTTGGTCAGCCTGCCATGGTTAATGGAATAAGAGCTGCAATGGGAAATAATTCAGTTATGAATGGAAGGGTTGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAGGATATAGGCAGCCAGCTACTTAGTGGGCTTGGAGCAGTTAATGGGTATAATAATCTTCAATTTGATTGGAAACATTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

917

Amino Acids

99.48

Weight (kDa)

8.82

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	345 - 599	1.4e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	366
Acc65I	GGTACC	2 cut(s)	4, 1295
AccB1I	GGYRCC	5 cut(s)	4, 35, 1295, 1485, 2222
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2126
AccI	GTMKAC	1 cut(s)	1714
AccII	CGCG	1 cut(s)	142
AciI	CCGC	5 cut(s)	17, 140, 716, 968, 1234
AclWI	GGATC	2 cut(s)	287, 2303
AcoI	YGGCCR	1 cut(s)	1165
AcsI	RAATTY	9 cut(s)	70, 229, 475, 1088, 1100, 1903, 2044, 2053, 2257
AcuI	CTGAAG	3 cut(s)	680, 1092, 1746
AcyI	GRCGYC	1 cut(s)	1486
AfaI	GTAC	7 cut(s)	6, 373, 954, 1122, 1297, 1822, 2140
AfiI	CCNNNNNNNGG	6 cut(s)	32, 233, 368, 1235, 2099, 2126
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	9 cut(s)	69, 328, 417, 1088, 1244, 1456, 1908, 2073, 2726
AjnI	CCWGG	8 cut(s)	247, 367, 1015, 1228, 1560, 1659, 2057, 2125
AleI	CACNNNNGTG	2 cut(s)	2024, 2247
AloI	GAACNNNNNNTCC	6 cut(s)	1982, 2014, 2094, 2126, 2189, 2221
Alw21I	GWGCWC	2 cut(s)	1030, 2330
Alw26I	GTCTC	3 cut(s)	139, 1763, 2036
Alw44I	GTGCAC	1 cut(s)	1026
AlwI	GGATC	2 cut(s)	287, 2303
AlwNI	CAGNNNCTG	2 cut(s)	851, 1778
Ama87I	CYCGRG	2 cut(s)	464, 2640
AoxI	GGCC	7 cut(s)	14, 282, 944, 1067, 1165, 1897, 1929
ApaLI	GTGCAC	1 cut(s)	1026
ApoI	RAATTY	9 cut(s)	70, 229, 475, 1088, 1100, 1903, 2044, 2053, 2257
Asp700I	GAANNNNTTC	1 cut(s)	2599
Asp718I	GGTACC	2 cut(s)	4, 1295
AspLEI	GCGC	2 cut(s)	1035, 1488
AspS9I	GGNCC	8 cut(s)	14, 98, 245, 282, 945, 1781, 1897, 1958
AsuC2I	CCSGG	1 cut(s)	1267
AsuHPI	GGTGA	5 cut(s)	42, 129, 2172, 2253, 2312
AsuII	TTCGAA	1 cut(s)	1432
AvaI	CYCGRG	2 cut(s)	464, 2640
AvaII	GGWCC	4 cut(s)	98, 245, 1781, 1958
AxyI	CCTNAGG	2 cut(s)	1191, 1524
BaeGI	GKGCMC	2 cut(s)	40, 1030
BanI	GGYRCC	5 cut(s)	4, 35, 1295, 1485, 2222
BanII	GRGCYC	2 cut(s)	606, 2330
BarI	GAAGNNNNNNTAC	2 cut(s)	1804, 1836
BauI	CACGAG	1 cut(s)	1329
BbsI	GAAGAC	2 cut(s)	183, 1080
Bbv12I	GWGCWC	2 cut(s)	1030, 2330
BbvCI	CCTCAGC	1 cut(s)	936
BccI	CCATC	5 cut(s)	267, 1415, 2046, 2128, 2212
BceAI	ACGGC	2 cut(s)	959, 1046
BciT130I	CCWGG	8 cut(s)	249, 369, 1017, 1230, 1562, 1661, 2059, 2127
BclI	TGATCA	2 cut(s)	619, 745
BcnI	CCSGG	1 cut(s)	1267
BcoDI	GTCTC	3 cut(s)	139, 1763, 2036
BfaI	CTAG	5 cut(s)	303, 1962, 1974, 2136, 2445
BfmI	CTRYAG	2 cut(s)	1545, 1715
BfoI	RGCGCY	2 cut(s)	1036, 1489
BfuAI	ACCTGC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	989
BlpI	GCTNAGC	2 cut(s)	574, 1795
BmcAI	AGTACT	1 cut(s)	1822
Bme1390I	CCNGG	9 cut(s)	249, 369, 1017, 1230, 1267, 1562, 1661, 2059, 2127
Bme18I	GGWCC	4 cut(s)	98, 245, 1781, 1958
BmeT110I	CYCGRG	2 cut(s)	464, 2640
BmgT120I	GGNCC	8 cut(s)	14, 98, 245, 282, 945, 1781, 1897, 1958
BmrFI	CCNGG	9 cut(s)	249, 369, 1017, 1230, 1267, 1562, 1661, 2059, 2127
BmrI	ACTGGG	2 cut(s)	34, 288
BmsI	GCATC	6 cut(s)	359, 772, 1589, 2006, 2639, 2665
BmuI	ACTGGG	2 cut(s)	34, 288
BpiI	GAAGAC	2 cut(s)	183, 1080
BpmI	CTGGAG	3 cut(s)	620, 1114, 1431
Bpu10I	CCTNAGC	2 cut(s)	936, 2380
Bpu1102I	GCTNAGC	2 cut(s)	574, 1795
Bpu14I	TTCGAA	1 cut(s)	1432
BpuEI	CTTGAG	2 cut(s)	825, 2139
BpuMI	CCSGG	1 cut(s)	1267
BsaAI	YACGTR	1 cut(s)	1705
BsaHI	GRCGYC	1 cut(s)	1486
BsaI	GGTCTC	1 cut(s)	2036
BsaJI	CCNNGG	7 cut(s)	941, 1229, 1265, 1299, 1659, 2125, 2565
BsaXI	ACNNNNNCTCC	4 cut(s)	963, 993, 2530, 2560
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 233, 368, 1235, 2099, 2126
Bse118I	RCCGGY	1 cut(s)	1167
Bse1I	ACTGG	6 cut(s)	40, 283, 1004, 1183, 1783, 2176
Bse21I	CCTNAGG	2 cut(s)	1191, 1524
Bse3DI	GCAATG	3 cut(s)	319, 936, 2595
BseBI	CCWGG	8 cut(s)	249, 369, 1017, 1230, 1562, 1661, 2059, 2127
BseDI	CCNNGG	7 cut(s)	941, 1229, 1265, 1299, 1659, 2125, 2565
BseGI	GGATG	5 cut(s)	1201, 1426, 1997, 2120, 2204
BseLI	CCNNNNNNNGG	6 cut(s)	32, 233, 368, 1235, 2099, 2126
BseMI	GCAATG	3 cut(s)	319, 936, 2595
BseMII	CTCAG	7 cut(s)	125, 950, 1205, 1538, 2162, 2394, 2526
BseNI	ACTGG	6 cut(s)	40, 283, 1004, 1183, 1783, 2176
BseRI	GAGGAG	1 cut(s)	2024
BseSI	GKGCMC	2 cut(s)	40, 1030
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	2 cut(s)	1946, 2271
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	7 cut(s)	16, 284, 946, 1069, 1167, 1899, 1931
BshNI	GGYRCC	5 cut(s)	4, 35, 1295, 1485, 2222
BsiHKAI	GWGCWC	2 cut(s)	1030, 2330
BsiHKCI	CYCGRG	2 cut(s)	464, 2640
BsiSI	CCGG	2 cut(s)	1168, 1267
BslFI	GGGAC	2 cut(s)	1789, 2076
BslI	CCNNNNNNNGG	6 cut(s)	32, 233, 368, 1235, 2099, 2126
BsmAI	GTCTC	3 cut(s)	139, 1763, 2036
BsmFI	GGGAC	2 cut(s)	1789, 2076
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	7 cut(s)	16, 284, 946, 1069, 1167, 1899, 1931
Bso31I	GGTCTC	1 cut(s)	2036
BsoBI	CYCGRG	2 cut(s)	464, 2640
Bsp119I	TTCGAA	1 cut(s)	1432
Bsp1286I	GDGCHC	4 cut(s)	40, 606, 1030, 2330
Bsp143I	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
Bsp1720I	GCTNAGC	2 cut(s)	574, 1795
Bsp19I	CCATGG	1 cut(s)	2565
BspACI	CCGC	5 cut(s)	17, 140, 716, 968, 1234
BspANI	GGCC	7 cut(s)	16, 284, 946, 1069, 1167, 1899, 1931
BspCNI	CTCAG	7 cut(s)	124, 949, 1204, 1537, 2161, 2393, 2525
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1549
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	2 cut(s)	287, 2303
BspT104I	TTCGAA	1 cut(s)	1432
BspT107I	GGYRCC	5 cut(s)	4, 35, 1295, 1485, 2222
BspTNI	GGTCTC	1 cut(s)	2036
BsrDI	GCAATG	3 cut(s)	319, 936, 2595
BsrFI	RCCGGY	1 cut(s)	1167
BsrI	ACTGG	6 cut(s)	40, 283, 1004, 1183, 1783, 2176
BssAI	RCCGGY	1 cut(s)	1167
BssECI	CCNNGG	7 cut(s)	941, 1229, 1265, 1299, 1659, 2125, 2565
BssMI	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
BssNI	GRCGYC	1 cut(s)	1486
BssSI	CACGAG	1 cut(s)	1329
BssT1I	CCWWGG	2 cut(s)	1299, 2565
Bst2BI	CACGAG	1 cut(s)	1329
Bst2UI	CCWGG	8 cut(s)	249, 369, 1017, 1230, 1562, 1661, 2059, 2127
Bst4CI	ACNGT	7 cut(s)	438, 1252, 1894, 2090, 2471, 2480, 2507
Bst6I	CTCTTC	1 cut(s)	841
BstACI	GRCGYC	1 cut(s)	1486
BstAPI	GCANNNNNTGC	3 cut(s)	499, 646, 851
BstBAI	YACGTR	1 cut(s)	1705
BstBI	TTCGAA	1 cut(s)	1432
BstC8I	GCNNGC	8 cut(s)	1169, 1226, 1918, 1929, 2017, 2289, 2562, 2681
BstDSI	CCRYGG	2 cut(s)	941, 2565
BstF5I	GGATG	5 cut(s)	1201, 1426, 1997, 2120, 2204
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	1036, 1489
BstHHI	GCGC	2 cut(s)	1035, 1488
BstKTI	GATC	6 cut(s)	295, 448, 622, 748, 992, 2311
BstMAI	GTCTC	3 cut(s)	139, 1763, 2036
BstMBI	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
BstNI	CCWGG	8 cut(s)	249, 369, 1017, 1230, 1562, 1661, 2059, 2127
BstNSI	RCATGY	2 cut(s)	169, 826
BstSCI	CCNGG	9 cut(s)	247, 367, 1015, 1228, 1265, 1560, 1659, 2057, 2125
BstSFI	CTRYAG	2 cut(s)	1545, 1715
BstSLI	GKGCMC	2 cut(s)	40, 1030
BstSNI	TACGTA	1 cut(s)	1705
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1080
BstX2I	RGATCY	1 cut(s)	989
BstXI	CCANNNNNNTGG	1 cut(s)	2375
BstYI	RGATCY	1 cut(s)	989
Bsu36I	CCTNAGG	2 cut(s)	1191, 1524
BsuRI	GGCC	7 cut(s)	16, 284, 946, 1069, 1167, 1899, 1931
BtgI	CCRYGG	2 cut(s)	941, 2565
BtsCI	GGATG	5 cut(s)	1201, 1426, 1997, 2120, 2204
BtsIMutI	CAGTG	1 cut(s)	1011
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	8 cut(s)	1169, 1226, 1918, 1929, 2017, 2289, 2562, 2681
CaiI	CAGNNNCTG	2 cut(s)	851, 1778
CfoI	GCGC	2 cut(s)	1035, 1488
Cfr10I	RCCGGY	1 cut(s)	1167
Cfr13I	GGNCC	8 cut(s)	14, 98, 245, 282, 945, 1781, 1897, 1958
CseI	GACGC	2 cut(s)	1048, 1922
Csp6I	GTAC	7 cut(s)	5, 372, 953, 1121, 1296, 1821, 2139
CviQI	GTAC	7 cut(s)	5, 372, 953, 1121, 1296, 1821, 2139
DinI	GGCGCC	1 cut(s)	1487
DpnI	GATC	6 cut(s)	294, 447, 621, 747, 991, 2310
DpnII	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
DraI	TTTAAA	1 cut(s)	1276
EaeI	YGGCCR	1 cut(s)	1165
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
Ecl136II	GAGCTC	1 cut(s)	2328
Eco105I	TACGTA	1 cut(s)	1705
Eco130I	CCWWGG	2 cut(s)	1299, 2565
Eco147I	AGGCCT	1 cut(s)	1069
Eco24I	GRGCYC	2 cut(s)	606, 2330
Eco31I	GGTCTC	1 cut(s)	2036
Eco32I	GATATC	1 cut(s)	1722
Eco47I	GGWCC	4 cut(s)	98, 245, 1781, 1958
Eco53kI	GAGCTC	1 cut(s)	2328
Eco57I	CTGAAG	3 cut(s)	680, 1092, 1746
Eco81I	CCTNAGG	2 cut(s)	1191, 1524
Eco88I	CYCGRG	2 cut(s)	464, 2640
EcoICRI	GAGCTC	1 cut(s)	2328
EcoRI	GAATTC	4 cut(s)	229, 1088, 1903, 2053
EcoRII	CCWGG	8 cut(s)	247, 367, 1015, 1228, 1560, 1659, 2057, 2125
EcoRV	GATATC	1 cut(s)	1722
EcoT14I	CCWWGG	2 cut(s)	1299, 2565
EcoT22I	ATGCAT	3 cut(s)	352, 1582, 2658
EcoT38I	GRGCYC	2 cut(s)	606, 2330
EgeI	GGCGCC	1 cut(s)	1487
EheI	GGCGCC	1 cut(s)	1487
ErhI	CCWWGG	2 cut(s)	1299, 2565
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	2 cut(s)	1789, 2076
FauI	CCCGC	1 cut(s)	1227
FbaI	TGATCA	2 cut(s)	619, 745
FblI	GTMKAC	1 cut(s)	1714
FokI	GGATG	5 cut(s)	1208, 1433, 1984, 2107, 2191
FriOI	GRGCYC	2 cut(s)	606, 2330
FspBI	CTAG	5 cut(s)	303, 1962, 1974, 2136, 2445
GlaI	GCGC	2 cut(s)	1034, 1487
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	3 cut(s)	620, 1114, 1431
HaeII	RGCGCY	2 cut(s)	1036, 1489
HaeIII	GGCC	7 cut(s)	16, 284, 946, 1069, 1167, 1899, 1931
HapII	CCGG	2 cut(s)	1168, 1267
HgaI	GACGC	2 cut(s)	1048, 1922
HhaI	GCGC	2 cut(s)	1035, 1488
Hin1I	GRCGYC	1 cut(s)	1486
Hin6I	GCGC	2 cut(s)	1033, 1486
HinP1I	GCGC	2 cut(s)	1033, 1486
HincII	GTYRAC	3 cut(s)	407, 1427, 1535
HindII	GTYRAC	3 cut(s)	407, 1427, 1535
HinfI	GANTC	9 cut(s)	223, 287, 469, 882, 976, 1434, 2116, 2152, 2318
HpaII	CCGG	2 cut(s)	1168, 1267
HphI	GGTGA	5 cut(s)	42, 129, 2172, 2253, 2312
Hpy166II	GTNNAC	8 cut(s)	101, 407, 1028, 1427, 1535, 1715, 1990, 2549
Hpy188I	TCNGA	9 cut(s)	228, 292, 474, 699, 1356, 1726, 1858, 2115, 2151
Hpy188III	TCNNGA	9 cut(s)	75, 466, 1093, 1193, 1331, 1418, 1448, 2335, 2642
Hpy8I	GTNNAC	8 cut(s)	101, 407, 1028, 1427, 1535, 1715, 1990, 2549
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	9 cut(s)	18, 63, 117, 345, 432, 1738, 1806, 2175, 2610
HpyCH4III	ACNGT	7 cut(s)	438, 1252, 1894, 2090, 2471, 2480, 2507
HpyCH4IV	ACGT	2 cut(s)	1704, 1986
HpySE526I	ACGT	2 cut(s)	1704, 1986
Hsp92I	GRCGYC	1 cut(s)	1486
HspAI	GCGC	2 cut(s)	1033, 1486
KasI	GGCGCC	1 cut(s)	1485
KpnI	GGTACC	2 cut(s)	8, 1299
KroI	GCCGGC	1 cut(s)	1167
KroNI	GCCGGC	1 cut(s)	1169
Ksp22I	TGATCA	2 cut(s)	619, 745
Kzo9I	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
LmnI	GCTCC	3 cut(s)	570, 601, 2699
LweI	GCATC	6 cut(s)	359, 772, 1589, 2006, 2639, 2665
MaeI	CTAG	5 cut(s)	303, 1962, 1974, 2136, 2445
MaeII	ACGT	2 cut(s)	1704, 1986
MaeIII	GTNAC	4 cut(s)	155, 813, 2178, 2507
MalI	GATC	6 cut(s)	294, 447, 621, 747, 991, 2310
MboI	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	989
MhlI	GDGCHC	4 cut(s)	40, 606, 1030, 2330
Mly113I	GGCGCC	1 cut(s)	1486
MlyI	GAGTC	2 cut(s)	296, 2146
MmeI	TCCRAC	3 cut(s)	565, 2388, 2602
Mph1103I	ATGCAT	3 cut(s)	352, 1582, 2658
MroNI	GCCGGC	1 cut(s)	1167
MroXI	GAANNNNTTC	1 cut(s)	2599
MseI	TTAA	8 cut(s)	201, 923, 1275, 1734, 2373, 2571, 2706, 2749
MslI	CAYNNNNRTG	5 cut(s)	164, 2024, 2247, 2357, 2462
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	2 cut(s)	1168, 1267
MspR9I	CCNGG	9 cut(s)	249, 369, 1017, 1230, 1267, 1562, 1661, 2059, 2127
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	8 cut(s)	249, 369, 1017, 1230, 1562, 1661, 2059, 2127
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1169
NarI	GGCGCC	1 cut(s)	1486
NciI	CCSGG	1 cut(s)	1267
NcoI	CCATGG	1 cut(s)	2565
NdeII	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
NgoMIV	GCCGGC	1 cut(s)	1167
NmeAIII	GCCGAG	4 cut(s)	310, 1135, 1621, 1790
NmuCI	GTSAC	1 cut(s)	2178
NsiI	ATGCAT	3 cut(s)	352, 1582, 2658
NspI	RCATGY	2 cut(s)	169, 826
NspV	TTCGAA	1 cut(s)	1432
OliI	CACNNNNGTG	2 cut(s)	2024, 2247
PaeR7I	CTCGAG	2 cut(s)	464, 2640
PceI	AGGCCT	1 cut(s)	1069
PciI	ACATGT	1 cut(s)	822
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1169
PdmI	GAANNNNTTC	1 cut(s)	2599
PfeI	GAWTC	7 cut(s)	223, 469, 882, 976, 1434, 2116, 2318
PflFI	GACNNNGTC	1 cut(s)	2553
PflMI	CCANNNNNTGG	2 cut(s)	32, 2126
PleI	GAGTC	2 cut(s)	295, 2146
PluTI	GGCGCC	1 cut(s)	1489
PpsI	GAGTC	2 cut(s)	295, 2146
Ppu21I	YACGTR	1 cut(s)	1705
PscI	ACATGT	1 cut(s)	822
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2330
Psp6I	CCWGG	8 cut(s)	247, 367, 1015, 1228, 1560, 1659, 2057, 2125
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	8 cut(s)	247, 367, 1015, 1228, 1560, 1659, 2057, 2125
PspPI	GGNCC	8 cut(s)	14, 98, 245, 282, 945, 1781, 1897, 1958
PstI	CTGCAG	1 cut(s)	1549
PstNI	CAGNNNCTG	2 cut(s)	851, 1778
PsuI	RGATCY	1 cut(s)	989
PsyI	GACNNNGTC	1 cut(s)	2553
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	7 cut(s)	6, 373, 954, 1122, 1297, 1822, 2140
RsaNI	GTAC	7 cut(s)	5, 372, 953, 1121, 1296, 1821, 2139
RseI	CAYNNNNRTG	5 cut(s)	164, 2024, 2247, 2357, 2462
SacI	GAGCTC	1 cut(s)	2330
SaqAI	TTAA	8 cut(s)	201, 923, 1275, 1734, 2373, 2571, 2706, 2749
Sau3AI	GATC	6 cut(s)	292, 445, 619, 745, 989, 2308
Sau96I	GGNCC	8 cut(s)	14, 98, 245, 282, 945, 1781, 1897, 1958
ScaI	AGTACT	1 cut(s)	1822
SchI	GAGTC	2 cut(s)	296, 2146
ScrFI	CCNGG	9 cut(s)	249, 369, 1017, 1230, 1267, 1562, 1661, 2059, 2127
SduI	GDGCHC	4 cut(s)	40, 606, 1030, 2330
SfaNI	GCATC	6 cut(s)	359, 772, 1589, 2006, 2639, 2665
SfcI	CTRYAG	2 cut(s)	1545, 1715
SfoI	GGCGCC	1 cut(s)	1487
Sfr274I	CTCGAG	2 cut(s)	464, 2640
SfuI	TTCGAA	1 cut(s)	1432
SinI	GGWCC	4 cut(s)	98, 245, 1781, 1958
SlaI	CTCGAG	2 cut(s)	464, 2640
SmiMI	CAYNNNNRTG	5 cut(s)	164, 2024, 2247, 2357, 2462
SmlI	CTYRAG	4 cut(s)	464, 840, 2154, 2640
SmoI	CTYRAG	4 cut(s)	464, 840, 2154, 2640
SnaBI	TACGTA	1 cut(s)	1705
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	5 cut(s)	17, 140, 716, 968, 1234
SspDI	GGCGCC	1 cut(s)	1485
SspI	AATATT	1 cut(s)	1084
SspMI	CTAG	5 cut(s)	303, 1962, 1974, 2136, 2445
SstI	GAGCTC	1 cut(s)	2330
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	9 cut(s)	247, 367, 1015, 1228, 1265, 1560, 1659, 2057, 2125
StyI	CCWWGG	2 cut(s)	1299, 2565
TaaI	ACNGT	7 cut(s)	438, 1252, 1894, 2090, 2471, 2480, 2507
TaiI	ACGT	2 cut(s)	1707, 1989
TaqI	TCGA	7 cut(s)	465, 565, 1432, 1507, 1810, 2195, 2641
TatI	WGTACW	3 cut(s)	952, 1820, 2138
TauI	GCSGC	2 cut(s)	19, 718
TfiI	GAWTC	7 cut(s)	223, 469, 882, 976, 1434, 2116, 2318
Tru1I	TTAA	8 cut(s)	201, 923, 1275, 1734, 2373, 2571, 2706, 2749
Tru9I	TTAA	8 cut(s)	201, 923, 1275, 1734, 2373, 2571, 2706, 2749
TscAI	CASTG	1 cut(s)	1011
TseFI	GTSAC	1 cut(s)	2178
Tsp45I	GTSAC	1 cut(s)	2178
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	1011
Tth111I	GACNNNGTC	1 cut(s)	2553
Van91I	CCANNNNNTGG	2 cut(s)	32, 2126
VneI	GTGCAC	1 cut(s)	1026
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1781, 1958
XapI	RAATTY	9 cut(s)	70, 229, 475, 1088, 1100, 1903, 2044, 2053, 2257
XceI	RCATGY	2 cut(s)	169, 826
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2216, 2687
XhoI	CTCGAG	2 cut(s)	464, 2640
XmiI	GTMKAC	1 cut(s)	1714
XmnI	GAANNNNTTC	1 cut(s)	2599
XspI	CTAG	5 cut(s)	303, 1962, 1974, 2136, 2445
ZrmI	AGTACT	1 cut(s)	1822
Zsp2I	ATGCAT	3 cut(s)	352, 1582, 2658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.