Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003910.1

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

57010 .. 63511

Gene Structure 6502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003910.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

atggtaccttcggggccgcccaatccaattggtggtgcccagtctgtttcaccttcgctcttgcgttcaaattctggaatgcttggaggtcaaaatggtccactaccttctcagtcagcttttccgtcgcttgtctcaccgcgtactcaattcagtaacatgaacatgcttggaaatgtagccaatgtgtcttctctccttaatcagccttttggaaatgggattccaaattcagggctttctggtcctggtagcagccatcgtggaggtattgatactggggctgagtccgatcccctctctagtgttggcaatggaatgggtttcaatgctccttcatcttataatgcatcaaacctggctaatcctggtacatctggtcaaggtcagggtcagggtcagggtcaacaattttcaaacccttctgatcaacaacagcaacaactcgagaatcagaattttcagcatagtcagcagcaaatgcaacagttctctacccctcacaacgcacagcagcagcagcaacagcaatttcagccaattcgagggagcttagctggtgttggacaagtcaagttggagccccagttgacaaatgatcaacatggacagcagcagcagcagttgcagtcttttagaggtcttggtcaagtgaaaatggaacctcaacaacttcagaacatgagaaacttgccgcctgtaaaagtggaaccccagcataatgatcagtcattgtatttgcatcaacaacagcaacagcaacagcaacagcaacaacagcagttactcaacatgtcaaggcactcttctcaagctactgccgcccatataaaccttctgcatcagcagagattcttgcagctaacacaacaacaccagcaacagcaactcttaaaagcaatgcctcagccacggccccaagtacagcagcaatttccgcaacagaatctccctatgagatctcctgcaaaaccagtgtatgaacctggaatgtgtgcacggcgcttgacgcattatatgtatcagcaacaacataggcctgaagacaataatattgaattctggagaaaatttgttgctgagtattttgtacctcatgccaagaagaaatggtgtgtttctatgtatggaagtggccggcagacaactggtgttttccctcaggatgtatggcattgtgagatatgcaatcgcaagcctgggcggggctttgaagcaactgttgaggttcttccccggctatttaaaatcaagtatgaaagtggtaccttggaggaacttctgtatgttgatatgcctcgtgagtatcataattcatctggtcagattgtgctggactatgccaaagcaatacaagaaagtgtttttgagcagcttcgtgttgttcgggatggtcaacttcgaatcgtgttctctccagacttgaagatatgctcttgggagttttgtgcaaggcgccatgaagagcttatccctcgaagattactgatacctcaggttagtcaacttggggctgcagctcaaaaataccaggctgctactcaaaatgcatcatctaatttatctattccagacatacaaagtaattgtaatatgtttgtatcgtcagctcggcagttggcaaaaaccctggaagtgccattagtaaatgatttaggctatacaaagagatacgtaaggtgtctacagatatcagaagtggttaatagtatgaaggacttgattgattacagccgagagacagggactggacccatggagagcttagccaagtttcctcgaaggacgagtacttcatctgggtttcacaatcaagcacagcagtctgatgaacaaatgcagcagcaacagcaacagcaaacggtgggccagaattcaaatgacgcaagctctgtgcaggccaatatgcaacttgctgttagtaatggacctagtggtatggctagtgtaaataacgtgaacacagcatccacatctacctctgcaagcaccattgtgggtctcctccatcaaaattccatgaattccaggcaacagagttcgatgaataatgcaaacagtccctatggaggaagttctgttcagattccatcccctggttcttctagtacaatccctcagactcaagcaaacccttctccattccagtcaccaacaccctcatcgaacaatccatcccaaacatctcatggtgccttgacagctaccaatcacatgagtgcagcaaattcaccagcaaatgtatccatgcaacagccagccctttctggtgaggctgatccaagtgattcccagagctctgtccagaaaattatacacgacatgatgatgtccaaccagcttaatggctcaggtagtatggttggtgtgggttctctgggaaacgatgtgaaaaacatgaatgggattttgtctagtagcaacaacacaggcatgaacggtggcaactgtctgtcggggaatgtcatgggcaacagtaactcaggtatggggggtggtggatttgggagtatgggtggacttggtcagcctgccatggttaatggaataagagctgcaatgggaaataattctgttatgaatggaagggttggaatggcatcaatggctcgagaacaaagtatgcatcatcaacaggatatagggagccagctacttagtgggcttggagcggttaatgggtttaataatcttcaatttgattggaaacattctccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

906

Amino Acids

98.48

Weight (kDa)

8.83

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1265
AccB1I	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2096
AccBSI	CCGCTC	1 cut(s)	2672
AccI	GTMKAC	1 cut(s)	1684
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 140, 695, 822, 938, 1204, 2672
AclWI	GGATC	2 cut(s)	287, 2273
AcoI	YGGCCR	1 cut(s)	1135
AcsI	RAATTY	9 cut(s)	70, 229, 457, 1058, 1070, 1873, 2014, 2023, 2227
AcuI	CTGAAG	2 cut(s)	659, 1062
AcyI	GRCGYC	1 cut(s)	1456
AfaI	GTAC	8 cut(s)	6, 145, 373, 924, 1092, 1267, 1792, 2110
AfiI	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	8 cut(s)	69, 328, 417, 1058, 1214, 1426, 1878, 2696
AjnI	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
AleI	CACNNNNGTG	2 cut(s)	1994, 2217
AloI	GAACNNNNNNTCC	6 cut(s)	1952, 1984, 2064, 2096, 2159, 2191
Alw21I	GWGCWC	2 cut(s)	1000, 2300
Alw26I	GTCTC	3 cut(s)	139, 1733, 2006
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	2 cut(s)	287, 2273
AlwNI	CAGNNNCTG	1 cut(s)	1748
Ama87I	CYCGRG	2 cut(s)	446, 2610
AoxI	GGCC	6 cut(s)	14, 914, 1037, 1135, 1867, 1899
ApaLI	GTGCAC	1 cut(s)	996
ApoI	RAATTY	9 cut(s)	70, 229, 457, 1058, 1070, 1873, 2014, 2023, 2227
Asp700I	GAANNNNTTC	1 cut(s)	2569
Asp718I	GGTACC	2 cut(s)	4, 1265
AspLEI	GCGC	2 cut(s)	1005, 1458
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
AsuC2I	CCSGG	1 cut(s)	1237
AsuHPI	GGTGA	5 cut(s)	42, 129, 2142, 2223, 2282
AsuII	TTCGAA	1 cut(s)	1402
AvaI	CYCGRG	2 cut(s)	446, 2610
AvaII	GGWCC	4 cut(s)	98, 245, 1751, 1928
AxyI	CCTNAGG	2 cut(s)	1161, 1494
BaeGI	GKGCMC	2 cut(s)	40, 1000
BanI	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
BanII	GRGCYC	2 cut(s)	585, 2300
BarI	GAAGNNNNNNTAC	2 cut(s)	1774, 1806
BauI	CACGAG	1 cut(s)	1299
BbsI	GAAGAC	2 cut(s)	183, 1050
Bbv12I	GWGCWC	2 cut(s)	1000, 2300
BbvCI	CCTCAGC	1 cut(s)	906
BccI	CCATC	5 cut(s)	267, 1385, 2016, 2098, 2182
BceAI	ACGGC	2 cut(s)	929, 1016
BciT130I	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
BciVI	GTATCC	1 cut(s)	2254
BclI	TGATCA	3 cut(s)	427, 598, 724
BcnI	CCSGG	1 cut(s)	1237
BcoDI	GTCTC	3 cut(s)	139, 1733, 2006
BfaI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
BfmI	CTRYAG	2 cut(s)	1515, 1685
BfoI	RGCGCY	2 cut(s)	1006, 1459
BfuI	GTATCC	1 cut(s)	2254
BglII	AGATCT	1 cut(s)	959
BlpI	GCTNAGC	2 cut(s)	553, 1765
BmcAI	AGTACT	1 cut(s)	1792
Bme18I	GGWCC	4 cut(s)	98, 245, 1751, 1928
BmeT110I	CYCGRG	2 cut(s)	446, 2610
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
BmrI	ACTGGG	3 cut(s)	34, 288, 580
BmsI	GCATC	7 cut(s)	359, 751, 850, 1559, 1976, 2609, 2635
BmuI	ACTGGG	3 cut(s)	34, 288, 580
BpiI	GAAGAC	2 cut(s)	183, 1050
BpmI	CTGGAG	2 cut(s)	1084, 1401
Bpu10I	CCTNAGC	2 cut(s)	906, 2350
Bpu1102I	GCTNAGC	2 cut(s)	553, 1765
Bpu14I	TTCGAA	1 cut(s)	1402
BpuEI	CTTGAG	2 cut(s)	795, 2109
BpuMI	CCSGG	1 cut(s)	1237
BsaAI	YACGTR	1 cut(s)	1675
BsaHI	GRCGYC	1 cut(s)	1456
BsaI	GGTCTC	1 cut(s)	2006
BsaJI	CCNNGG	8 cut(s)	911, 1199, 1235, 1269, 1629, 1755, 2095, 2535
BsaXI	ACNNNNNCTCC	6 cut(s)	572, 602, 933, 963, 2500, 2530
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
Bse118I	RCCGGY	1 cut(s)	1137
Bse1I	ACTGG	7 cut(s)	40, 283, 586, 974, 1153, 1753, 2146
Bse21I	CCTNAGG	2 cut(s)	1161, 1494
Bse3DI	GCAATG	3 cut(s)	319, 906, 2565
BseBI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
BseDI	CCNNGG	8 cut(s)	911, 1199, 1235, 1269, 1629, 1755, 2095, 2535
BseGI	GGATG	5 cut(s)	1171, 1396, 1967, 2090, 2174
BseLI	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
BseMI	GCAATG	3 cut(s)	319, 906, 2565
BseMII	CTCAG	9 cut(s)	125, 276, 920, 1071, 1175, 1508, 2132, 2364, 2496
BseNI	ACTGG	7 cut(s)	40, 283, 586, 974, 1153, 1753, 2146
BseRI	GAGGAG	1 cut(s)	1994
BseSI	GKGCMC	2 cut(s)	40, 1000
BseYI	CCCAGC	1 cut(s)	714
BsgI	GTGCAG	2 cut(s)	1916, 2241
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
BshNI	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
BsiHKAI	GWGCWC	2 cut(s)	1000, 2300
BsiHKCI	CYCGRG	2 cut(s)	446, 2610
BsiSI	CCGG	2 cut(s)	1138, 1237
BslFI	GGGAC	2 cut(s)	1759, 2046
BslI	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
BsmAI	GTCTC	3 cut(s)	139, 1733, 2006
BsmFI	GGGAC	2 cut(s)	1759, 2046
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
Bso31I	GGTCTC	1 cut(s)	2006
BsoBI	CYCGRG	2 cut(s)	446, 2610
Bsp119I	TTCGAA	1 cut(s)	1402
Bsp1286I	GDGCHC	4 cut(s)	40, 585, 1000, 2300
Bsp143I	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
Bsp1720I	GCTNAGC	2 cut(s)	553, 1765
Bsp19I	CCATGG	2 cut(s)	1755, 2535
BspACI	CCGC	7 cut(s)	17, 140, 695, 822, 938, 1204, 2672
BspANI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
BspCNI	CTCAG	9 cut(s)	124, 277, 919, 1072, 1174, 1507, 2131, 2363, 2495
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1519
BspPI	GGATC	2 cut(s)	287, 2273
BspQI	GCTCTTC	1 cut(s)	1458
BspT104I	TTCGAA	1 cut(s)	1402
BspT107I	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
BspTNI	GGTCTC	1 cut(s)	2006
BsrBI	CCGCTC	1 cut(s)	2672
BsrDI	GCAATG	3 cut(s)	319, 906, 2565
BsrFI	RCCGGY	1 cut(s)	1137
BsrI	ACTGG	7 cut(s)	40, 283, 586, 974, 1153, 1753, 2146
BssAI	RCCGGY	1 cut(s)	1137
BssECI	CCNNGG	8 cut(s)	911, 1199, 1235, 1269, 1629, 1755, 2095, 2535
BssMI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
BssNI	GRCGYC	1 cut(s)	1456
BssSI	CACGAG	1 cut(s)	1299
BssT1I	CCWWGG	3 cut(s)	1269, 1755, 2535
Bst2BI	CACGAG	1 cut(s)	1299
Bst2UI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
Bst4CI	ACNGT	7 cut(s)	489, 1222, 1864, 2060, 2441, 2450, 2477
Bst6I	CTCTTC	2 cut(s)	811, 1458
BstACI	GRCGYC	1 cut(s)	1456
BstAPI	GCANNNNNTGC	2 cut(s)	481, 625
BstBAI	YACGTR	1 cut(s)	1675
BstBI	TTCGAA	1 cut(s)	1402
BstC8I	GCNNGC	8 cut(s)	1139, 1196, 1888, 1899, 1987, 2259, 2532, 2651
BstDSI	CCRYGG	3 cut(s)	911, 1755, 2535
BstF5I	GGATG	5 cut(s)	1171, 1396, 1967, 2090, 2174
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	1006, 1459
BstHHI	GCGC	2 cut(s)	1005, 1458
BstKTI	GATC	6 cut(s)	295, 430, 601, 727, 962, 2281
BstMAI	GTCTC	3 cut(s)	139, 1733, 2006
BstMBI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
BstNI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
BstNSI	RCATGY	2 cut(s)	169, 796
BstSFI	CTRYAG	2 cut(s)	1515, 1685
BstSLI	GKGCMC	2 cut(s)	40, 1000
BstSNI	TACGTA	1 cut(s)	1675
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1050
BstX2I	RGATCY	1 cut(s)	959
BstXI	CCANNNNNNTGG	1 cut(s)	2345
BstYI	RGATCY	1 cut(s)	959
Bsu36I	CCTNAGG	2 cut(s)	1161, 1494
BsuI	GTATCC	1 cut(s)	2254
BsuRI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
BtgI	CCRYGG	3 cut(s)	911, 1755, 2535
BtsCI	GGATG	5 cut(s)	1171, 1396, 1967, 2090, 2174
BtsIMutI	CAGTG	1 cut(s)	981
Cac8I	GCNNGC	8 cut(s)	1139, 1196, 1888, 1899, 1987, 2259, 2532, 2651
CaiI	CAGNNNCTG	1 cut(s)	1748
CfoI	GCGC	2 cut(s)	1005, 1458
Cfr10I	RCCGGY	1 cut(s)	1137
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
CseI	GACGC	2 cut(s)	1018, 1892
Csp6I	GTAC	8 cut(s)	5, 144, 372, 923, 1091, 1266, 1791, 2109
CviQI	GTAC	8 cut(s)	5, 144, 372, 923, 1091, 1266, 1791, 2109
DinI	GGCGCC	1 cut(s)	1457
DpnI	GATC	6 cut(s)	294, 429, 600, 726, 961, 2280
DpnII	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
DraI	TTTAAA	1 cut(s)	1246
EaeI	YGGCCR	1 cut(s)	1135
Eam1104I	CTCTTC	2 cut(s)	811, 1458
EarI	CTCTTC	2 cut(s)	811, 1458
Ecl136II	GAGCTC	1 cut(s)	2298
Eco105I	TACGTA	1 cut(s)	1675
Eco130I	CCWWGG	3 cut(s)	1269, 1755, 2535
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	2 cut(s)	585, 2300
Eco31I	GGTCTC	1 cut(s)	2006
Eco32I	GATATC	1 cut(s)	1692
Eco47I	GGWCC	4 cut(s)	98, 245, 1751, 1928
Eco53kI	GAGCTC	1 cut(s)	2298
Eco57I	CTGAAG	2 cut(s)	659, 1062
Eco81I	CCTNAGG	2 cut(s)	1161, 1494
Eco88I	CYCGRG	2 cut(s)	446, 2610
EcoICRI	GAGCTC	1 cut(s)	2298
EcoRI	GAATTC	3 cut(s)	1058, 1873, 2023
EcoRII	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
EcoRV	GATATC	1 cut(s)	1692
EcoT14I	CCWWGG	3 cut(s)	1269, 1755, 2535
EcoT22I	ATGCAT	3 cut(s)	352, 1552, 2628
EcoT38I	GRGCYC	2 cut(s)	585, 2300
EgeI	GGCGCC	1 cut(s)	1457
EheI	GGCGCC	1 cut(s)	1457
ErhI	CCWWGG	3 cut(s)	1269, 1755, 2535
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	2 cut(s)	1759, 2046
FauI	CCCGC	1 cut(s)	1197
FbaI	TGATCA	3 cut(s)	427, 598, 724
FblI	GTMKAC	1 cut(s)	1684
FokI	GGATG	5 cut(s)	1178, 1403, 1954, 2077, 2161
FriOI	GRGCYC	2 cut(s)	585, 2300
FspBI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
GlaI	GCGC	2 cut(s)	1004, 1457
GsaI	CCCAGC	1 cut(s)	718
GsuI	CTGGAG	2 cut(s)	1084, 1401
HaeII	RGCGCY	2 cut(s)	1006, 1459
HaeIII	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
HapII	CCGG	2 cut(s)	1138, 1237
HgaI	GACGC	2 cut(s)	1018, 1892
HhaI	GCGC	2 cut(s)	1005, 1458
Hin1I	GRCGYC	1 cut(s)	1456
Hin6I	GCGC	2 cut(s)	1003, 1456
HinP1I	GCGC	2 cut(s)	1003, 1456
HincII	GTYRAC	4 cut(s)	407, 591, 1397, 1505
HindII	GTYRAC	4 cut(s)	407, 591, 1397, 1505
HinfI	GANTC	9 cut(s)	223, 287, 451, 852, 946, 1404, 2086, 2122, 2288
HpaII	CCGG	2 cut(s)	1138, 1237
HphI	GGTGA	5 cut(s)	42, 129, 2142, 2223, 2282
Hpy166II	GTNNAC	9 cut(s)	101, 407, 591, 998, 1397, 1505, 1685, 1960, 2519
Hpy188I	TCNGA	9 cut(s)	292, 427, 456, 678, 1326, 1696, 1828, 2085, 2121
Hpy8I	GTNNAC	9 cut(s)	101, 407, 591, 998, 1397, 1505, 1685, 1960, 2519
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	7 cut(s)	489, 1222, 1864, 2060, 2441, 2450, 2477
HpyCH4IV	ACGT	2 cut(s)	1674, 1956
HpySE526I	ACGT	2 cut(s)	1674, 1956
Hsp92I	GRCGYC	1 cut(s)	1456
HspAI	GCGC	2 cut(s)	1003, 1456
KasI	GGCGCC	1 cut(s)	1455
KpnI	GGTACC	2 cut(s)	8, 1269
KroI	GCCGGC	1 cut(s)	1137
KroNI	GCCGGC	1 cut(s)	1139
Ksp22I	TGATCA	3 cut(s)	427, 598, 724
Kzo9I	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
LguI	GCTCTTC	1 cut(s)	1458
LmnI	GCTCC	5 cut(s)	337, 549, 580, 2646, 2669
LweI	GCATC	7 cut(s)	359, 751, 850, 1559, 1976, 2609, 2635
MaeI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
MaeII	ACGT	2 cut(s)	1674, 1956
MaeIII	GTNAC	4 cut(s)	155, 783, 2148, 2477
MalI	GATC	6 cut(s)	294, 429, 600, 726, 961, 2280
MbiI	CCGCTC	1 cut(s)	2672
MboI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	959
MhlI	GDGCHC	4 cut(s)	40, 585, 1000, 2300
Mly113I	GGCGCC	1 cut(s)	1456
MlyI	GAGTC	2 cut(s)	296, 2116
MmeI	TCCRAC	4 cut(s)	544, 558, 2358, 2572
Mph1103I	ATGCAT	3 cut(s)	352, 1552, 2628
MroNI	GCCGGC	1 cut(s)	1137
MroXI	GAANNNNTTC	1 cut(s)	2569
MseI	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
MslI	CAYNNNNRTG	5 cut(s)	164, 1994, 2217, 2327, 2432
MspI	CCGG	2 cut(s)	1138, 1237
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1139
NarI	GGCGCC	1 cut(s)	1456
NciI	CCSGG	1 cut(s)	1237
NcoI	CCATGG	2 cut(s)	1755, 2535
NdeII	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
NgoMIV	GCCGGC	1 cut(s)	1137
NmeAIII	GCCGAG	2 cut(s)	1591, 1760
NmuCI	GTSAC	1 cut(s)	2148
NsiI	ATGCAT	3 cut(s)	352, 1552, 2628
NspI	RCATGY	2 cut(s)	169, 796
NspV	TTCGAA	1 cut(s)	1402
OliI	CACNNNNGTG	2 cut(s)	1994, 2217
PaeR7I	CTCGAG	2 cut(s)	446, 2610
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	1458
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1139
PdmI	GAANNNNTTC	1 cut(s)	2569
PfeI	GAWTC	7 cut(s)	223, 451, 852, 946, 1404, 2086, 2288
PflFI	GACNNNGTC	1 cut(s)	2523
PflMI	CCANNNNNTGG	2 cut(s)	32, 2096
PleI	GAGTC	2 cut(s)	295, 2116
PluTI	GGCGCC	1 cut(s)	1459
PpsI	GAGTC	2 cut(s)	295, 2116
Ppu21I	YACGTR	1 cut(s)	1675
PscI	ACATGT	1 cut(s)	792
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2300
Psp6I	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
PspPI	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
PstI	CTGCAG	1 cut(s)	1519
PstNI	CAGNNNCTG	1 cut(s)	1748
PsuI	RGATCY	1 cut(s)	959
PsyI	GACNNNGTC	1 cut(s)	2523
RsaI	GTAC	8 cut(s)	6, 145, 373, 924, 1092, 1267, 1792, 2110
RsaNI	GTAC	8 cut(s)	5, 144, 372, 923, 1091, 1266, 1791, 2109
RseI	CAYNNNNRTG	5 cut(s)	164, 1994, 2217, 2327, 2432
SacI	GAGCTC	1 cut(s)	2300
SapI	GCTCTTC	1 cut(s)	1458
SaqAI	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
Sau3AI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
ScaI	AGTACT	1 cut(s)	1792
SchI	GAGTC	2 cut(s)	296, 2116
SduI	GDGCHC	4 cut(s)	40, 585, 1000, 2300
SfaNI	GCATC	7 cut(s)	359, 751, 850, 1559, 1976, 2609, 2635
SfcI	CTRYAG	2 cut(s)	1515, 1685
SfoI	GGCGCC	1 cut(s)	1457
Sfr274I	CTCGAG	2 cut(s)	446, 2610
SfuI	TTCGAA	1 cut(s)	1402
SinI	GGWCC	4 cut(s)	98, 245, 1751, 1928
SlaI	CTCGAG	2 cut(s)	446, 2610
SmiMI	CAYNNNNRTG	5 cut(s)	164, 1994, 2217, 2327, 2432
SmlI	CTYRAG	4 cut(s)	446, 810, 2124, 2610
SmoI	CTYRAG	4 cut(s)	446, 810, 2124, 2610
SnaBI	TACGTA	1 cut(s)	1675
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	7 cut(s)	17, 140, 695, 822, 938, 1204, 2672
SspDI	GGCGCC	1 cut(s)	1455
SspI	AATATT	1 cut(s)	1054
SspMI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
SstI	GAGCTC	1 cut(s)	2300
StuI	AGGCCT	1 cut(s)	1039
StyI	CCWWGG	3 cut(s)	1269, 1755, 2535
TaaI	ACNGT	7 cut(s)	489, 1222, 1864, 2060, 2441, 2450, 2477
TaiI	ACGT	2 cut(s)	1677, 1959
TaqI	TCGA	8 cut(s)	447, 544, 1402, 1477, 1780, 2042, 2165, 2611
TatI	WGTACW	3 cut(s)	922, 1790, 2108
TauI	GCSGC	3 cut(s)	19, 697, 824
TfiI	GAWTC	7 cut(s)	223, 451, 852, 946, 1404, 2086, 2288
Tru1I	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
Tru9I	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
TscAI	CASTG	1 cut(s)	981
TseFI	GTSAC	1 cut(s)	2148
Tsp45I	GTSAC	1 cut(s)	2148
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	981
Tth111I	GACNNNGTC	1 cut(s)	2523
Van91I	CCANNNNNTGG	2 cut(s)	32, 2096
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1751, 1928
XapI	RAATTY	9 cut(s)	70, 229, 457, 1058, 1070, 1873, 2014, 2023, 2227
XceI	RCATGY	2 cut(s)	169, 796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2186, 2657
XhoI	CTCGAG	2 cut(s)	446, 2610
XmiI	GTMKAC	1 cut(s)	1684
XmnI	GAANNNNTTC	1 cut(s)	2569
XspI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
ZrmI	AGTACT	1 cut(s)	1792
Zsp2I	ATGCAT	3 cut(s)	352, 1552, 2628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.