FvH4_2g17300

Ferric-chelate reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005090
Physical Location & Seq
Reverse (-)
14943963 .. 14946077
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17300.t1

Sequence Viewer

Length: 1110 bp
ATGAAAGGAAACTCTCCCTTCATAGTTCTCATCACCATCACCATCACCATATTTGGCTTGTCAGCCATAGTGAATTCACAAACAGATTCCTGCAGCTCAACTCTAAACCTCCAGAGTGTCACTCTGCCCTTTGATGCAGCTTCCCTTCACTGCCGTGCTGTTTGGGACGCTCATAGTTACATCCTCAGATACTCAGAGACCACACCAGGAACATGGACCTTTGTTCTCTCAGCACCTGCAGCAGATTCCTACATAGCAATGGGGTTCTCAAGCAATGGCCAGATGGTTGGCTCCAGTGCCATTGTGGGGTGGATGTCCCCAACAGAAGGAGGAGTAATTAGGCGTTACTACTTACGTGGGACTTCACCAAGCCTTGTGGAGCTTGACAAAGGGAACCTAGTTCTTACCAATTACTCCTTCATCACAACTCAGTCTGCTACAGTATACATGGGGTTCCAGTTGGTGACTGACCAACCACAAACCAAGCTCATATACTCAGTTGGCCCAACTGGGTTGCTTCCTGTAGCACCTAACTACAGGTTGACCGAGCACTTTGACAAGGTCGCCACCTCCATAAATTACATTACAGGTCAAACTACATCGAGCACTGGGAGTCCATATACGAGATTAAGAAGGAGCCATGGAGTACTGAATATTCTTGGATGGGGCATTCTGATGATAATTGGAGTAATAGTTGCTCGTCACTTAAAGTCCTATGAACCTCTTTGGTTTTACCTTCATATTGGCATCCAATCATTCGCATTTGTTTTCGGAATAATAGGTGTCATTTGTGGATTTGTCTTAGACAATAAGATTAGTGCTGATGTCTCCACCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTGGATGTCTGCAGGTGATGGCATTTTTGGCTCGACCAGATAAGGTGTCGAAAGCACGAAAATACTGGAATTGGTACCATCAAAGCGTGGGAAGGCTTCTGATTATTCTTGCAGTAGCAAATATATTCTACGGGATCCATTTGGGAGAAGAAGGAAAGGGATGGAATGCTGGATATGGAGTCGCTCTGGCTATCTTGGTTGTTACTGCTGTTTTTCTCGAGTTAAAATTGTGGTTTAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

370

Amino Acids

40.53

Weight (kDa)

9.33

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 214 - 334 4.8e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 244, 868
Acc36I ACCTGC 2 cut(s) 244, 868
Acc65I GGTACC 1 cut(s) 939
AccB1I GGYRCC 1 cut(s) 939
AccI GTMKAC 1 cut(s) 444
AclWI GGATC 2 cut(s) 994, 1007
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 2 cut(s) 648, 941
AfiI CCNNNNNNNGG 2 cut(s) 306, 326
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 5 cut(s) 96, 140, 382, 487, 842
AluI AGCT 5 cut(s) 96, 140, 382, 487, 842
Alw21I GWGCWC 2 cut(s) 552, 608
Alw26I GTCTC 2 cut(s) 191, 832
AlwI GGATC 2 cut(s) 994, 1007
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 2 cut(s) 277, 502
ApeKI GCWGC 3 cut(s) 93, 137, 239
ApoI RAATTY 1 cut(s) 73
Asp718I GGTACC 1 cut(s) 939
AspS9I GGNCC 2 cut(s) 216, 503
AsuHPI GGTGA 6 cut(s) 25, 31, 37, 357, 475, 892
AvaI CYCGRG 1 cut(s) 1082
AvaII GGWCC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 279
BamHI GGATCC 1 cut(s) 999
BanI GGYRCC 1 cut(s) 939
Bbv12I GWGCWC 2 cut(s) 552, 608
BbvI GCAGC 3 cut(s) 105, 149, 251
BccI CCATC 7 cut(s) 44, 50, 277, 657, 877, 951, 1020
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 191, 832
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 6 cut(s) 91, 237, 438, 522, 535, 875
BfuAI ACCTGC 2 cut(s) 244, 868
BisI GCNGC 3 cut(s) 94, 138, 240
BlsI GCNGC 3 cut(s) 95, 139, 241
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 2 cut(s) 216, 503
BmiI GGNNCC 6 cut(s) 292, 395, 455, 638, 941, 1001
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 2 cut(s) 519, 618
BmsI GCATC 2 cut(s) 124, 756
BmuI ACTGGG 2 cut(s) 519, 618
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 2 cut(s) 95, 277
BpuEI CTTGAG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 326
Bse1I ACTGG 5 cut(s) 294, 457, 514, 613, 935
Bse3DI GCAATG 2 cut(s) 264, 280
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 640
BseGI GGATG 6 cut(s) 180, 318, 668, 747, 875, 1031
BseLI CCNNNNNNNGG 2 cut(s) 306, 326
BseMI GCAATG 2 cut(s) 264, 280
BseMII CTCAG 5 cut(s) 199, 207, 243, 443, 510
BseNI ACTGG 5 cut(s) 294, 457, 514, 613, 935
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 105, 149, 251
BshFI GGCC 2 cut(s) 279, 504
BshNI GGYRCC 1 cut(s) 939
BsiHKAI GWGCWC 2 cut(s) 552, 608
BsiHKCI CYCGRG 1 cut(s) 1082
BslFI GGGAC 3 cut(s) 179, 301, 373
BslI CCNNNNNNNGG 2 cut(s) 306, 326
BsmAI GTCTC 2 cut(s) 191, 832
BsmFI GGGAC 3 cut(s) 179, 301, 373
BsmI GAATGC 2 cut(s) 669, 1036
BsnI GGCC 2 cut(s) 279, 504
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 1082
Bsp1286I GDGCHC 2 cut(s) 552, 608
Bsp143I GATC 1 cut(s) 999
Bsp19I CCATGG 1 cut(s) 640
BspANI GGCC 2 cut(s) 279, 504
BspCNI CTCAG 5 cut(s) 198, 206, 242, 442, 509
BspLI GGNNCC 6 cut(s) 292, 395, 455, 638, 941, 1001
BspMAI CTGCAG 3 cut(s) 95, 241, 879
BspMI ACCTGC 2 cut(s) 244, 868
BspPI GGATC 2 cut(s) 994, 1007
BspT107I GGYRCC 1 cut(s) 939
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 264, 280
BsrI ACTGG 5 cut(s) 294, 457, 514, 613, 935
BssECI CCNNGG 1 cut(s) 640
BssMI GATC 1 cut(s) 999
BssNAI GTATAC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 640
Bst1107I GTATAC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 356
BstDEI CTNAG 6 cut(s) 185, 193, 229, 429, 496, 802
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 6 cut(s) 180, 318, 668, 747, 875, 1031
BstKTI GATC 1 cut(s) 1002
BstMAI GTCTC 2 cut(s) 191, 832
BstMBI GATC 1 cut(s) 999
BstMWI GCNNNNNNNGC 2 cut(s) 239, 893
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 6 cut(s) 91, 237, 438, 522, 535, 875
BstV1I GCAGC 3 cut(s) 105, 149, 251
BstX2I RGATCY 1 cut(s) 999
BstXI CCANNNNNNTGG 2 cut(s) 213, 287
BstYI RGATCY 1 cut(s) 999
BstZ17I GTATAC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 279, 504
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 6 cut(s) 180, 318, 668, 747, 875, 1031
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 3 cut(s) 148, 301, 606
BveI ACCTGC 2 cut(s) 244, 868
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 216, 503
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 647, 940
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 3 cut(s) 213, 448, 641
CviQI GTAC 2 cut(s) 647, 940
DdeI CTNAG 6 cut(s) 185, 193, 229, 429, 496, 802
DpnI GATC 1 cut(s) 1001
DpnII GATC 1 cut(s) 999
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 640
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 3 cut(s) 216, 451, 644
FaqI GGGAC 3 cut(s) 179, 301, 373
FatI CATG 3 cut(s) 212, 447, 640
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 94, 138, 240
FokI GGATG 6 cut(s) 167, 325, 675, 734, 882, 1038
Fsp4HI GCNGC 3 cut(s) 94, 138, 240
FspBI CTAG 1 cut(s) 398
GluI GCNGC 3 cut(s) 94, 138, 240
GsuI CTGGAG 2 cut(s) 95, 277
HaeIII GGCC 2 cut(s) 279, 504
HgaI GACGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 216, 451, 644
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 4 cut(s) 86, 245, 613, 1044
HphI GGTGA 6 cut(s) 25, 31, 37, 357, 475, 892
Hpy166II GTNNAC 2 cut(s) 445, 543
Hpy188I TCNGA 5 cut(s) 188, 196, 675, 773, 966
Hpy188III TCNNGA 2 cut(s) 112, 1082
Hpy8I GTNNAC 2 cut(s) 445, 543
HpyAV CCTTC 8 cut(s) 28, 155, 320, 427, 627, 746, 951, 1010
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 93, 137, 239, 877, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 893
HpyF3I CTNAG 6 cut(s) 185, 193, 229, 429, 496, 802
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 216, 451, 644
KpnI GGTACC 1 cut(s) 943
Kzo9I GATC 1 cut(s) 999
LmnI GCTCC 3 cut(s) 296, 379, 636
Lsp1109I GCAGC 3 cut(s) 105, 149, 251
LweI GCATC 2 cut(s) 124, 756
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 6 cut(s) 118, 176, 344, 463, 701, 1066
MalI GATC 1 cut(s) 1001
MboI GATC 1 cut(s) 999
MboII GAAGA 2 cut(s) 844, 1025
MflI RGATCY 1 cut(s) 999
MhlI GDGCHC 2 cut(s) 552, 608
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 7 cut(s) 73, 336, 409, 577, 681, 934, 1091
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 2 cut(s) 622, 1053
MnlI CCTC 5 cut(s) 119, 194, 323, 580, 732
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 3 cut(s) 629, 707, 1088
MslI CAYNNNNRTG 4 cut(s) 153, 257, 674, 860
Msp20I TGGCCA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 669, 1036
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 239, 893
NcoI CCATGG 1 cut(s) 640
NdeII GATC 1 cut(s) 999
NlaIII CATG 3 cut(s) 216, 451, 644
NlaIV GGNNCC 6 cut(s) 292, 395, 455, 638, 941, 1001
NmuCI GTSAC 3 cut(s) 118, 463, 701
OliI CACNNNNGTG 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 1082
PaqCI CACCTGC 2 cut(s) 244, 868
PctI GAATGC 2 cut(s) 669, 1036
PfeI GAWTC 2 cut(s) 86, 245
PflFI GACNNNGTC 1 cut(s) 560
PkrI GCNGC 3 cut(s) 95, 139, 241
PleI GAGTC 2 cut(s) 621, 1052
PpsI GAGTC 2 cut(s) 621, 1052
Ppu21I YACGTR 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 6 cut(s) 292, 395, 455, 638, 941, 1001
PspPI GGNCC 2 cut(s) 216, 503
PstI CTGCAG 3 cut(s) 95, 241, 879
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 999
PsyI GACNNNGTC 1 cut(s) 560
RsaI GTAC 2 cut(s) 648, 941
RsaNI GTAC 2 cut(s) 647, 940
RseI CAYNNNNRTG 4 cut(s) 153, 257, 674, 860
SaqAI TTAA 3 cut(s) 629, 707, 1088
SatI GCNGC 3 cut(s) 94, 138, 240
Sau3AI GATC 1 cut(s) 999
Sau96I GGNCC 2 cut(s) 216, 503
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 2 cut(s) 622, 1053
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 552, 608
SfaNI GCATC 2 cut(s) 124, 756
SfcI CTRYAG 6 cut(s) 91, 237, 438, 522, 535, 875
Sfr274I CTCGAG 1 cut(s) 1082
SinI GGWCC 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 1082
SmiMI CAYNNNNRTG 4 cut(s) 153, 257, 674, 860
SmlI CTYRAG 2 cut(s) 268, 1082
SmoI CTYRAG 2 cut(s) 268, 1082
Sse9I AATT 7 cut(s) 73, 336, 409, 577, 681, 934, 1091
SspI AATATT 1 cut(s) 655
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 358
TaqI TCGA 4 cut(s) 602, 898, 914, 1083
TaqII GACCGA 1 cut(s) 560
TasI AATT 7 cut(s) 73, 336, 409, 577, 681, 934, 1091
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 2 cut(s) 86, 245
Tru1I TTAA 3 cut(s) 629, 707, 1088
Tru9I TTAA 3 cut(s) 629, 707, 1088
TscAI CASTG 3 cut(s) 155, 301, 613
TseFI GTSAC 3 cut(s) 118, 463, 701
TseI GCWGC 3 cut(s) 93, 137, 239
Tsp45I GTSAC 3 cut(s) 118, 463, 701
TspDTI ATGAA 6 cut(s) 10, 17, 409, 728, 732, 844
TspRI CASTG 3 cut(s) 155, 301, 613
Tth111I GACNNNGTC 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 2 cut(s) 301, 842
XhoI CTCGAG 1 cut(s) 1082
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.