Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Reverse (-)

44023585 .. 44025668

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAAGAAAACTCTCAATTCATAGTTTTCATCACCATCGCCATCACCATTTTTGGCTTAACAGCCATAGTGAATTCCCAAACAGATTCCTGCAGCTCAAGTCTAAACCTCCGGAGTGTCAATCTGCCCTTTGATGCAGCTTCCCTCAACTGCGATGCTGTGTGGGATTCTCAGGGTTACATCCTCAGATACTCACAGACCACACCAGGAACATGGACCTTTGTTCTCTCAGCACCTGCAGCAAATTCCTACATAGCAATGGGGTTCTCAAGCAATGGCCAGATGACGGGGTCCAGTGCGATTGTGGGGTGGGTGTCCTCAACAGAGGGAGGAGTAATTAAGCGGTACTACCTAGGTGGGACTTCATCAAACCTTGTGGAGGTCGACAAAGGGAACCTTGTTCTTACCAACTTCTCCTTCATCACAAATCAGTCTTCCACGGTATACATGGGGTTCCAGTTGGTGGCTGACCAACCACAAAGTAGGCTCATATACTCAGTTGGCCCAACTGGGTTGCTTCCTGTAGCACCTAACTACAGGTTGACCGAGCACTTTGACAAGGTCTCCACCACCATAAATTACATTACAGGTCAAACATCGAGCACAGGAAGTCCATATACAAGATTAAGAAGGAGCCATGGAGCACTGAATATGCTTGGATGGGGCATTTTGATGATAATTGGAGTAATAGTTGCTCGTCACTTAAAGTCCTATGATCCACTTTGGTTTTACCTTCATATTGGCATCCAATCATTCGCATTTGTGTTTGGAATAATAGGTGTCATTTGTGGATTTGTCTTAGACAATAAGACTAAAGCTGATGTCTCCACCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTGGATGTCTTCAGGTGATGGCATTTTTGGCTCGACCTGATAAGGTATCGAAAGCACGAAAATACTGGAATTGGTACCATCAAAGCGTGGGAAGGCTTCTGATTATTCTTGCAGTTGCAAATGTTTTCTATGGAATCCATGTGGGAGAAGAAGGAACAGCATGGAATGCTGGATATGGAGCTGTTCTTGCTATCTTGGTTGTTATTGCTGTTATTCTCGAATTAAAATTGTGGTTTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

368

Amino Acids

40.29

Weight (kDa)

9.25

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOMON	PF03351	63 - 137	3.6e-07	DOMON domain
Cytochrom_B561	PF03188	213 - 333	9.2e-08	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
Acc65I	GGTACC	1 cut(s)	936
AccB1I	GGYRCC	1 cut(s)	936
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	2 cut(s)	384, 444
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	73, 244
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	2 cut(s)	347, 938
AfiI	CCNNNNNNNGG	3 cut(s)	286, 379, 463
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	5 cut(s)	96, 140, 818, 839, 1043
AluI	AGCT	5 cut(s)	96, 140, 818, 839, 1043
Alw21I	GWGCWC	3 cut(s)	552, 605, 646
Alw26I	GTCTC	2 cut(s)	568, 829
AlwI	GGATC	1 cut(s)	710
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	2 cut(s)	277, 502
ApeKI	GCWGC	3 cut(s)	93, 137, 239
ApoI	RAATTY	2 cut(s)	73, 244
Asp718I	GGTACC	1 cut(s)	936
AspA2I	CCTAGG	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	216, 291, 503
AsuHPI	GGTGA	3 cut(s)	25, 37, 889
AvaII	GGWCC	2 cut(s)	216, 291
AvrII	CCTAGG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BbsI	GAAGAC	2 cut(s)	426, 863
Bbv12I	GWGCWC	3 cut(s)	552, 605, 646
BbvI	GCAGC	3 cut(s)	105, 149, 251
BccI	CCATC	5 cut(s)	44, 50, 654, 874, 948
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	568, 829
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	4 cut(s)	91, 237, 522, 535
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	94, 138, 240
BlnI	CCTAGG	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	95, 139, 241
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	216, 291
BmgT120I	GGNCC	3 cut(s)	216, 291, 503
BmiI	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	124, 145, 753
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	2 cut(s)	426, 863
BpuEI	CTTGAG	2 cut(s)	82, 253
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	3 cut(s)	352, 438, 637
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 675, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 379, 463
Bse1I	ACTGG	4 cut(s)	294, 457, 514, 932
Bse3DI	GCAATG	2 cut(s)	264, 280
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	352, 438, 637
BseGI	GGATG	4 cut(s)	180, 665, 744, 872
BseLI	CCNNNNNNNGG	3 cut(s)	286, 379, 463
BseMI	GCAATG	2 cut(s)	264, 280
BseMII	CTCAG	4 cut(s)	185, 199, 243, 510
BseNI	ACTGG	4 cut(s)	294, 457, 514, 932
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	105, 149, 251
BshFI	GGCC	2 cut(s)	279, 504
BshNI	GGYRCC	1 cut(s)	936
BsiHKAI	GWGCWC	3 cut(s)	552, 605, 646
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	3 cut(s)	286, 379, 463
BsmAI	GTCTC	2 cut(s)	568, 829
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	1033
BsnI	GGCC	2 cut(s)	279, 504
Bso31I	GGTCTC	1 cut(s)	568
Bsp1286I	GDGCHC	3 cut(s)	552, 605, 646
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	715
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	279, 504
BspCNI	CTCAG	4 cut(s)	184, 198, 242, 509
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
BspMAI	CTGCAG	2 cut(s)	95, 241
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	936
BspTNI	GGTCTC	1 cut(s)	568
BsrDI	GCAATG	2 cut(s)	264, 280
BsrI	ACTGG	4 cut(s)	294, 457, 514, 932
BssECI	CCNNGG	3 cut(s)	352, 438, 637
BssMI	GATC	1 cut(s)	715
BssNAI	GTATAC	1 cut(s)	445
BssT1I	CCWWGG	2 cut(s)	352, 637
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstDEI	CTNAG	5 cut(s)	171, 185, 229, 496, 799
BstDSI	CCRYGG	2 cut(s)	438, 637
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	180, 665, 744, 872
BstKTI	GATC	1 cut(s)	718
BstMAI	GTCTC	2 cut(s)	568, 829
BstMBI	GATC	1 cut(s)	715
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 890, 1028, 1049
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	4 cut(s)	91, 237, 522, 535
BstV1I	GCAGC	3 cut(s)	105, 149, 251
BstV2I	GAAGAC	2 cut(s)	426, 863
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	279, 504
BtgI	CCRYGG	2 cut(s)	438, 637
BtgZI	GCGATG	2 cut(s)	22, 168
BtsCI	GGATG	4 cut(s)	180, 665, 744, 872
BtsIMutI	CAGTG	2 cut(s)	301, 644
BveI	ACCTGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	216, 291, 503
Csp6I	GTAC	2 cut(s)	346, 937
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	5 cut(s)	213, 448, 638, 1001, 1023
CviQI	GTAC	2 cut(s)	346, 937
DdeI	CTNAG	5 cut(s)	171, 185, 229, 496, 799
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	352, 637
Eco31I	GGTCTC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	216, 291
Eco57I	CTGAAG	1 cut(s)	857
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	352, 637
ErhI	CCWWGG	2 cut(s)	352, 637
FaeI	CATG	5 cut(s)	216, 451, 641, 1004, 1026
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	5 cut(s)	212, 447, 637, 1000, 1022
FblI	GTMKAC	2 cut(s)	384, 444
Fnu4HI	GCNGC	3 cut(s)	94, 138, 240
FokI	GGATG	4 cut(s)	167, 672, 731, 879
Fsp4HI	GCNGC	3 cut(s)	94, 138, 240
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	3 cut(s)	94, 138, 240
HaeIII	GGCC	2 cut(s)	279, 504
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	5 cut(s)	216, 451, 641, 1004, 1026
HincII	GTYRAC	2 cut(s)	385, 543
HindII	GTYRAC	2 cut(s)	385, 543
HinfI	GANTC	3 cut(s)	86, 167, 996
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	3 cut(s)	25, 37, 889
Hpy166II	GTNNAC	3 cut(s)	385, 445, 543
Hpy188I	TCNGA	2 cut(s)	188, 963
Hpy188III	TCNNGA	2 cut(s)	112, 1079
Hpy8I	GTNNAC	3 cut(s)	385, 445, 543
HpyAV	CCTTC	5 cut(s)	427, 624, 743, 948, 1007
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	93, 137, 239, 974, 980
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 890, 1028, 1049
HpyF3I	CTNAG	5 cut(s)	171, 185, 229, 496, 799
Hsp92II	CATG	5 cut(s)	216, 451, 641, 1004, 1026
Kpn2I	TCCGGA	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	940
Kzo9I	GATC	1 cut(s)	715
LmnI	GCTCC	3 cut(s)	633, 641, 1040
Lsp1109I	GCAGC	3 cut(s)	105, 149, 251
LweI	GCATC	3 cut(s)	124, 145, 753
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	176, 698
MalI	GATC	1 cut(s)	717
MboI	GATC	1 cut(s)	715
MboII	GAAGA	4 cut(s)	426, 841, 863, 1022
MhlI	GDGCHC	3 cut(s)	552, 605, 646
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	9 cut(s)	17, 73, 244, 336, 577, 678, 931, 1082, 1088
MluNI	TGGCCA	1 cut(s)	279
MnlI	CCTC	7 cut(s)	119, 155, 194, 319, 323, 328, 373
Mox20I	TGGCCA	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	5 cut(s)	59, 339, 626, 704, 1085
MslI	CAYNNNNRTG	3 cut(s)	257, 671, 857
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	1033
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	239, 890, 1028, 1049
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	1 cut(s)	715
NlaIII	CATG	5 cut(s)	216, 451, 641, 1004, 1026
NlaIV	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
NmuCI	GTSAC	1 cut(s)	698
PaqCI	CACCTGC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	1033
PfeI	GAWTC	3 cut(s)	86, 167, 996
PflFI	GACNNNGTC	2 cut(s)	289, 560
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	95, 139, 241
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
PspPI	GGNCC	3 cut(s)	216, 291, 503
PstI	CTGCAG	2 cut(s)	95, 241
PstNI	CAGNNNCTG	1 cut(s)	236
PsyI	GACNNNGTC	2 cut(s)	289, 560
RsaI	GTAC	2 cut(s)	347, 938
RsaNI	GTAC	2 cut(s)	346, 937
RseI	CAYNNNNRTG	3 cut(s)	257, 671, 857
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	5 cut(s)	59, 339, 626, 704, 1085
SatI	GCNGC	3 cut(s)	94, 138, 240
Sau3AI	GATC	1 cut(s)	715
Sau96I	GGNCC	3 cut(s)	216, 291, 503
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	3 cut(s)	552, 605, 646
SfaNI	GCATC	3 cut(s)	124, 145, 753
SfcI	CTRYAG	4 cut(s)	91, 237, 522, 535
SinI	GGWCC	2 cut(s)	216, 291
SmiMI	CAYNNNNRTG	3 cut(s)	257, 671, 857
SmlI	CTYRAG	2 cut(s)	97, 268
SmoI	CTYRAG	2 cut(s)	97, 268
Sse9I	AATT	9 cut(s)	17, 73, 244, 336, 577, 678, 931, 1082, 1088
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	352, 637
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	5 cut(s)	384, 599, 895, 911, 1080
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	9 cut(s)	17, 73, 244, 336, 577, 678, 931, 1082, 1088
TfiI	GAWTC	3 cut(s)	86, 167, 996
Tru1I	TTAA	5 cut(s)	59, 339, 626, 704, 1085
Tru9I	TTAA	5 cut(s)	59, 339, 626, 704, 1085
TscAI	CASTG	2 cut(s)	301, 651
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	3 cut(s)	93, 137, 239
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	7 cut(s)	10, 17, 19, 354, 409, 725, 841
TspRI	CASTG	2 cut(s)	301, 651
Tth111I	GACNNNGTC	2 cut(s)	289, 560
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	216, 291
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	73, 244
XcmI	CCANNNNNNNNNTGG	3 cut(s)	301, 445, 839
XmaJI	CCTAGG	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	384, 444
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.