Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Reverse (-)

16064427 .. 16065343

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAGGCATTCATAGCTTCCATCATCATCGTCATCTTTTGCTTATCAGCCAGAGTGAATTCACAAACAGATTCATGCAGCTCGAGTCTAAACTTGAAGAATGTCAATTTGCCATTTGATGCAGCTTCTCTCAATTGCCTTGTTGTTTGGGATGCTCATAACTATATCCTCAGATACTCACAAACTTCATCAAACCTATGGACCTTTGTCCTCTCAGCACCAGCTGCTAATTCATACATTGCAATTGGGTTCTCAAGCAACGGCCAGATGGTGGGTTCCAGTGCAATTGTGGGGTGGATGTCCTCAACAGGAGGAGAGATCAAACCTTATTACTTGGGTGGGACCTCACCTAACCTTGTGGAGCCCAACAAGGGGAGCCTTCAAGTTGGAACCAACTTTTCCTTAATTACATCCCAGTCCAACAGATTGTACCTAGGGTTCCAATTGGAGACCAATCAGCCGCTATCAAGGCTCATATACTCTGTTGGACCAGATGGGTTGCTGCCTGTGGCTCCCAACTACAGATTGAGTGAGCATAGTGACAAGGTCTCCACCTACATAAATTATATCACAGGTGGGTACAATTCAAACCAAACTAAGGTTGACTTTTTAATTTTTATTTATTTATTTTTTTTTTTTACGAGCGATATTAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

220

Amino Acids

24.07

Weight (kDa)

6.71

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	58
AfaI	GTAC	2 cut(s)	431, 581
AfiI	CCNNNNNNNGG	4 cut(s)	271, 371, 372, 598
AgsI	TTSAA	3 cut(s)	97, 383, 588
AluBI	AGCT	4 cut(s)	17, 81, 125, 224
AluI	AGCT	4 cut(s)	17, 81, 125, 224
Alw26I	GTCTC	2 cut(s)	443, 553
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	78, 122, 224, 502
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	201, 342, 488
AsuHPI	GGTGA	1 cut(s)	339
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	3 cut(s)	201, 342, 488
AvrII	CCTAGG	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	366
BbvI	GCAGC	4 cut(s)	90, 134, 211, 489
BccI	CCATC	3 cut(s)	29, 262, 488
BceAI	ACGGC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	443, 553
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	520
BisI	GCNGC	5 cut(s)	79, 123, 225, 461, 503
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	5 cut(s)	80, 124, 226, 462, 504
Bme18I	GGWCC	3 cut(s)	201, 342, 488
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	3 cut(s)	201, 342, 488
BmiI	GGNNCC	7 cut(s)	277, 343, 363, 377, 391, 440, 513
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	109, 142
BmuI	ACTGGG	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	238
BsaI	GGTCTC	2 cut(s)	443, 553
BsaJI	CCNNGG	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 371, 372, 598
Bse1I	ACTGG	2 cut(s)	279, 415
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	3 cut(s)	157, 303, 410
BseLI	CCNNNNNNNGG	4 cut(s)	271, 371, 372, 598
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	184, 228
BseNI	ACTGG	2 cut(s)	279, 415
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	4 cut(s)	90, 134, 211, 489
BshFI	GGCC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	4 cut(s)	271, 371, 372, 598
BsmAI	GTCTC	2 cut(s)	443, 553
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	264
Bso31I	GGTCTC	2 cut(s)	443, 553
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	2 cut(s)	183, 227
BspLI	GGNNCC	7 cut(s)	277, 343, 363, 377, 391, 440, 513
BspTNI	GGTCTC	2 cut(s)	443, 553
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	279, 415
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	170, 214, 597
BstF5I	GGATG	3 cut(s)	157, 303, 410
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	443, 553
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 224, 469
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	90, 134, 211, 489
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	157, 303, 410
BtsIMutI	CAGTG	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	201, 342, 488
Csp6I	GTAC	2 cut(s)	430, 580
CviAII	CATG	1 cut(s)	75
CviQI	GTAC	2 cut(s)	430, 580
DdeI	CTNAG	3 cut(s)	170, 214, 597
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	2 cut(s)	443, 553
Eco47I	GGWCC	3 cut(s)	201, 342, 488
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	1 cut(s)	78
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	5 cut(s)	79, 123, 225, 461, 503
FokI	GGATG	3 cut(s)	164, 310, 397
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	79, 123, 225, 461, 503
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	5 cut(s)	79, 123, 225, 461, 503
HaeIII	GGCC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	71, 85
HphI	GGTGA	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	78, 122, 242, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 224, 469
HpyF3I	CTNAG	3 cut(s)	170, 214, 597
Hsp92II	CATG	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	3 cut(s)	361, 375, 517
LpnPI	CCDG	9 cut(s)	64, 234, 278, 292, 294, 428, 504, 519, 558
Lsp1109I	GCAGC	4 cut(s)	90, 134, 211, 489
LweI	GCATC	2 cut(s)	109, 142
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	4 cut(s)	133, 243, 285, 443
MhlI	GDGCHC	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	3 cut(s)	367, 444, 466
MnlI	CCTC	5 cut(s)	179, 221, 305, 313, 355
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	404, 611
MspA1I	CMGCKG	1 cut(s)	224
MunI	CAATTG	4 cut(s)	133, 243, 285, 443
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	14, 224, 469
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	78
NlaIV	GGNNCC	7 cut(s)	277, 343, 363, 377, 391, 440, 513
NmuCI	GTSAC	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	82
PctI	GAATGC	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	80, 124, 226, 462, 504
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	342
PshAI	GACNNNNGTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	342
PspN4I	GGNNCC	7 cut(s)	277, 343, 363, 377, 391, 440, 513
PspPI	GGNCC	3 cut(s)	201, 342, 488
PspPPI	RGGWCCY	1 cut(s)	342
PspXI	VCTCGAGB	1 cut(s)	82
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
PsyI	GACNNNGTC	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	431, 581
RsaNI	GTAC	2 cut(s)	430, 580
SaqAI	TTAA	2 cut(s)	404, 611
SatI	GCNGC	5 cut(s)	79, 123, 225, 461, 503
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	3 cut(s)	201, 342, 488
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	109, 142
SfcI	CTRYAG	1 cut(s)	520
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	3 cut(s)	201, 342, 488
SlaI	CTCGAG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	82, 253
SmoI	CTYRAG	2 cut(s)	82, 253
SsiI	CCGC	1 cut(s)	461
SspMI	CTAG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	433
TaqI	TCGA	1 cut(s)	83
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	404, 611
Tru9I	TTAA	2 cut(s)	404, 611
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	4 cut(s)	78, 122, 224, 502
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	4 cut(s)	17, 63, 177, 222
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	201, 342, 488
XapI	RAATTY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.