Rmu_co8010262.1_g000001

Ferric-chelate reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8010262.1
OG0005090
Physical Location & Seq
Forward (+)
1 .. 532
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8010262.1_g000001.1.cds

Sequence Viewer

Length: 280 bp
ccatagtgaattcccaaacagattcctgcagctcaagtctaaacctccggagtgtcaatctgccctttgatgcagcttccctcaactgcgatgctgtgtgggattctcagggttacatcctcagatactcacagaccacaccaggaacatggacctttgttctctcagcacctgcagcaaattcctacatagcaatggggttctcaagcaatggccagatgacggggtccagtgcgattgtggggtgggtgtcctcaacagagggaggagtaattaagcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

93

Amino Acids

9.8

Weight (kDa)

4.78

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 2 cut(s) 9, 180
AfiI CCNNNNNNNGG 1 cut(s) 222
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 32, 76
AluI AGCT 2 cut(s) 32, 76
AlwNI CAGNNNCTG 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 29, 73, 175
ApoI RAATTY 2 cut(s) 9, 180
AspS9I GGNCC 2 cut(s) 152, 227
AvaII GGWCC 2 cut(s) 152, 227
BalI TGGCCA 1 cut(s) 215
BbvI GCAGC 3 cut(s) 41, 85, 187
BciT130I CCWGG 1 cut(s) 143
BfmI CTRYAG 2 cut(s) 27, 173
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 3 cut(s) 30, 74, 176
BlsI GCNGC 3 cut(s) 31, 75, 177
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 2 cut(s) 152, 227
BmgT120I GGNCC 2 cut(s) 152, 227
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 2 cut(s) 60, 81
BpuEI CTTGAG 2 cut(s) 18, 189
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 2 cut(s) 200, 216
BseAI TCCGGA 1 cut(s) 47
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 2 cut(s) 200, 216
BseMII CTCAG 3 cut(s) 121, 135, 179
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 3 cut(s) 41, 85, 187
BshFI GGCC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 1 cut(s) 215
Bsp13I TCCGGA 1 cut(s) 47
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 3 cut(s) 120, 134, 178
BspEI TCCGGA 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 2 cut(s) 31, 177
BspMI ACCTGC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 200, 216
BsrI ACTGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 107, 121, 165
BstF5I GGATG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 2 cut(s) 27, 173
BstV1I GCAGC 3 cut(s) 41, 85, 187
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 152, 227
CviAII CATG 1 cut(s) 149
CviJI RGCY 3 cut(s) 32, 76, 215
CviKI_1 RGCY 3 cut(s) 32, 76, 215
DdeI CTNAG 3 cut(s) 107, 121, 165
EaeI YGGCCR 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 152, 227
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 4, 150, 190
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 30, 74, 176
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 30, 74, 176
GluI GCNGC 3 cut(s) 30, 74, 176
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 152
HinfI GANTC 2 cut(s) 22, 103
HpaII CCGG 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 29, 73, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 3 cut(s) 107, 121, 165
Hsp92II CATG 1 cut(s) 152
Kpn2I TCCGGA 1 cut(s) 47
LpnPI CCDG 8 cut(s) 39, 61, 94, 128, 155, 185, 229, 243
Lsp1109I GCAGC 3 cut(s) 41, 85, 187
LweI GCATC 2 cut(s) 60, 81
MaeIII GTNAC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 3 cut(s) 9, 180, 272
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 6 cut(s) 55, 91, 130, 255, 259, 264
Mox20I TGGCCA 1 cut(s) 215
MroI TCCGGA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 193
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 22, 103
PflFI GACNNNGTC 1 cut(s) 225
PkrI GCNGC 3 cut(s) 31, 75, 177
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 152, 227
PstI CTGCAG 2 cut(s) 31, 177
PstNI CAGNNNCTG 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 3 cut(s) 30, 74, 176
Sau96I GGNCC 2 cut(s) 152, 227
ScrFI CCNGG 1 cut(s) 143
SetI ASST 5 cut(s) 34, 47, 78, 157, 174
SfaNI GCATC 2 cut(s) 60, 81
SfcI CTRYAG 2 cut(s) 27, 173
SinI GGWCC 2 cut(s) 152, 227
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 33, 204
SmoI CTYRAG 2 cut(s) 33, 204
Sse9I AATT 3 cut(s) 9, 180, 272
StyD4I CCNGG 1 cut(s) 141
TasI AATT 3 cut(s) 9, 180, 272
TfiI GAWTC 2 cut(s) 22, 103
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 237
TseI GCWGC 3 cut(s) 29, 73, 175
TspRI CASTG 1 cut(s) 237
Tth111I GACNNNGTC 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 152, 227
XapI RAATTY 2 cut(s) 9, 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.