Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Reverse (-)

45152011 .. 45154300

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAAGAAAACTCTCAATTCATAGTTTTCATCACCATCGCCATCACCATTTTTGGCTTAACAGCCATAGTGAATTCCCAAACAGATTCCTGCAGCTCAAGTCTAAACCTCCGGAGTGTCAATCTGCCCTTTGATGCAGCTTCCCTCAACTGCGATGCTGTGTGGGATTCTCAGGGTTACATCCTCAGATACTCACAGACCACACCAGGAACATGGACCTTTGTTCTCTCAGCACCTGCAGCAAATTCCTACATAGCAATGGGGTTCTCAAGCAATGGCCAGATGACCGGGTCCAGTGCGATTGTGGGGTGGGTGTCCTCAACAGAGGGAGGAGTAATTAAGCGGTACTACCTAGGTGGGACTTCATCAAACCTTGTGGAGGTCGACAAAGGGAACCTTGTTCTTACCAACTTCTCCTTCATCACAAATCAGTCTTCCACGGTATACATGGGGTTCCAGTTGGTGGCTGACCAACCACAAAGTAGGCTCATATACTCAGTTGGCCCAACTGGGTTGCTTCCTGTAGCACCTAACTACAGGTTGACCGAGCACTTTGACAAGGTCTCCACCACCATAAATTACATTACAGGTCAAACATCGAGCACAGGAAGTCCATATACAAGATTAAGAAGGAGCCATGGAGCACTGAATATGCTTGGATGGGGCATTTTGATGATAATTGGAGTAATAGTTGCTCGTCACTTAAAGTCCTATGATCCACTTTGGTTTTACCTTCATATTGGCATCCAATCATTCGCATTTGTGTTTGGAATAATAGGTGTCATTTGTGGATTTGTCTTAGACAATAAGACTAAAGCTGATGTCTCCACCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTGGATGTCTTCAGGTGATGGCATTTTTGGCTCGACCAGATAAGGTATCGAAAGCACGAAAATACTGGAATTGGTACCATCAAAGCGTGGGAAGGCTTCTGATTATTCTTGCAGTTGCAAATGTTTTCTATGGAATCCATGTGGGAGAAGAAGGAACAGCATGGAATGCTGGATATGGAGCTGTTCTTGCTATCTTGGTTGTTATTGCTGTTATTCTCGAATTAAAATTGTGGTTTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

368

Amino Acids

40.29

Weight (kDa)

9.25

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOMON	PF03351	63 - 137	3.6e-07	DOMON domain
Cytochrom_B561	PF03188	213 - 333	9.2e-08	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
Acc65I	GGTACC	1 cut(s)	936
AccB1I	GGYRCC	1 cut(s)	936
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	2 cut(s)	384, 444
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	73, 244
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	2 cut(s)	347, 938
AfiI	CCNNNNNNNGG	2 cut(s)	379, 463
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	5 cut(s)	96, 140, 818, 839, 1043
AluI	AGCT	5 cut(s)	96, 140, 818, 839, 1043
Alw21I	GWGCWC	3 cut(s)	552, 605, 646
Alw26I	GTCTC	2 cut(s)	568, 829
AlwI	GGATC	1 cut(s)	710
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	2 cut(s)	277, 502
ApeKI	GCWGC	3 cut(s)	93, 137, 239
ApoI	RAATTY	2 cut(s)	73, 244
Asp718I	GGTACC	1 cut(s)	936
AspA2I	CCTAGG	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	216, 291, 503
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	25, 37, 889
AvaII	GGWCC	2 cut(s)	216, 291
AvrII	CCTAGG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BbsI	GAAGAC	2 cut(s)	426, 863
Bbv12I	GWGCWC	3 cut(s)	552, 605, 646
BbvI	GCAGC	3 cut(s)	105, 149, 251
BccI	CCATC	5 cut(s)	44, 50, 654, 874, 948
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	568, 829
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	4 cut(s)	91, 237, 522, 535
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	94, 138, 240
BlnI	CCTAGG	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	95, 139, 241
Bme1390I	CCNGG	2 cut(s)	207, 289
Bme18I	GGWCC	2 cut(s)	216, 291
BmgT120I	GGNCC	3 cut(s)	216, 291, 503
BmiI	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
BmrFI	CCNGG	2 cut(s)	207, 289
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	124, 145, 753
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	2 cut(s)	426, 863
BpuEI	CTTGAG	2 cut(s)	82, 253
BpuMI	CCSGG	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	3 cut(s)	352, 438, 637
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 463
Bse1I	ACTGG	4 cut(s)	294, 457, 514, 932
Bse3DI	GCAATG	2 cut(s)	264, 280
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	352, 438, 637
BseGI	GGATG	4 cut(s)	180, 665, 744, 872
BseLI	CCNNNNNNNGG	2 cut(s)	379, 463
BseMI	GCAATG	2 cut(s)	264, 280
BseMII	CTCAG	4 cut(s)	185, 199, 243, 510
BseNI	ACTGG	4 cut(s)	294, 457, 514, 932
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	105, 149, 251
BshFI	GGCC	2 cut(s)	279, 504
BshNI	GGYRCC	1 cut(s)	936
BsiHKAI	GWGCWC	3 cut(s)	552, 605, 646
BsiSI	CCGG	2 cut(s)	112, 288
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	379, 463
BsmAI	GTCTC	2 cut(s)	568, 829
BsmFI	GGGAC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	1033
BsnI	GGCC	2 cut(s)	279, 504
Bso31I	GGTCTC	1 cut(s)	568
Bsp1286I	GDGCHC	3 cut(s)	552, 605, 646
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	715
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	279, 504
BspCNI	CTCAG	4 cut(s)	184, 198, 242, 509
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
BspMAI	CTGCAG	2 cut(s)	95, 241
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	936
BspTNI	GGTCTC	1 cut(s)	568
BsrDI	GCAATG	2 cut(s)	264, 280
BsrI	ACTGG	4 cut(s)	294, 457, 514, 932
BssECI	CCNNGG	3 cut(s)	352, 438, 637
BssMI	GATC	1 cut(s)	715
BssNAI	GTATAC	1 cut(s)	445
BssT1I	CCWWGG	2 cut(s)	352, 637
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstDEI	CTNAG	5 cut(s)	171, 185, 229, 496, 799
BstDSI	CCRYGG	2 cut(s)	438, 637
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	180, 665, 744, 872
BstKTI	GATC	1 cut(s)	718
BstMAI	GTCTC	2 cut(s)	568, 829
BstMBI	GATC	1 cut(s)	715
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 890, 1028, 1049
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 287
BstSFI	CTRYAG	4 cut(s)	91, 237, 522, 535
BstV1I	GCAGC	3 cut(s)	105, 149, 251
BstV2I	GAAGAC	2 cut(s)	426, 863
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	279, 504
BtgI	CCRYGG	2 cut(s)	438, 637
BtgZI	GCGATG	2 cut(s)	22, 168
BtsCI	GGATG	4 cut(s)	180, 665, 744, 872
BtsIMutI	CAGTG	2 cut(s)	301, 644
BveI	ACCTGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	216, 291, 503
Csp6I	GTAC	2 cut(s)	346, 937
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	5 cut(s)	213, 448, 638, 1001, 1023
CviQI	GTAC	2 cut(s)	346, 937
DdeI	CTNAG	5 cut(s)	171, 185, 229, 496, 799
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	352, 637
Eco31I	GGTCTC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	216, 291
Eco57I	CTGAAG	1 cut(s)	857
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	352, 637
ErhI	CCWWGG	2 cut(s)	352, 637
FaeI	CATG	5 cut(s)	216, 451, 641, 1004, 1026
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	5 cut(s)	212, 447, 637, 1000, 1022
FblI	GTMKAC	2 cut(s)	384, 444
Fnu4HI	GCNGC	3 cut(s)	94, 138, 240
FokI	GGATG	4 cut(s)	167, 672, 731, 879
Fsp4HI	GCNGC	3 cut(s)	94, 138, 240
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	3 cut(s)	94, 138, 240
HaeIII	GGCC	2 cut(s)	279, 504
HapII	CCGG	2 cut(s)	112, 288
Hin1II	CATG	5 cut(s)	216, 451, 641, 1004, 1026
HincII	GTYRAC	2 cut(s)	385, 543
HindII	GTYRAC	2 cut(s)	385, 543
HinfI	GANTC	3 cut(s)	86, 167, 996
HpaII	CCGG	2 cut(s)	112, 288
HphI	GGTGA	3 cut(s)	25, 37, 889
Hpy166II	GTNNAC	3 cut(s)	385, 445, 543
Hpy188I	TCNGA	2 cut(s)	188, 963
Hpy188III	TCNNGA	2 cut(s)	112, 1079
Hpy8I	GTNNAC	3 cut(s)	385, 445, 543
HpyAV	CCTTC	5 cut(s)	427, 624, 743, 948, 1007
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	93, 137, 239, 974, 980
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 890, 1028, 1049
HpyF3I	CTNAG	5 cut(s)	171, 185, 229, 496, 799
Hsp92II	CATG	5 cut(s)	216, 451, 641, 1004, 1026
Kpn2I	TCCGGA	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	940
Kzo9I	GATC	1 cut(s)	715
LmnI	GCTCC	3 cut(s)	633, 641, 1040
Lsp1109I	GCAGC	3 cut(s)	105, 149, 251
LweI	GCATC	3 cut(s)	124, 145, 753
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	176, 698
MalI	GATC	1 cut(s)	717
MboI	GATC	1 cut(s)	715
MboII	GAAGA	4 cut(s)	426, 841, 863, 1022
MhlI	GDGCHC	3 cut(s)	552, 605, 646
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	9 cut(s)	17, 73, 244, 336, 577, 678, 931, 1082, 1088
MluNI	TGGCCA	1 cut(s)	279
MnlI	CCTC	7 cut(s)	119, 155, 194, 319, 323, 328, 373
Mox20I	TGGCCA	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	5 cut(s)	59, 339, 626, 704, 1085
MslI	CAYNNNNRTG	3 cut(s)	257, 671, 857
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	2 cut(s)	112, 288
MspR9I	CCNGG	2 cut(s)	207, 289
Mva1269I	GAATGC	1 cut(s)	1033
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	239, 890, 1028, 1049
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	1 cut(s)	715
NlaIII	CATG	5 cut(s)	216, 451, 641, 1004, 1026
NlaIV	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
NmuCI	GTSAC	1 cut(s)	698
PaqCI	CACCTGC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	1033
PfeI	GAWTC	3 cut(s)	86, 167, 996
PflFI	GACNNNGTC	2 cut(s)	289, 560
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	95, 139, 241
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	5 cut(s)	292, 395, 455, 635, 938
PspPI	GGNCC	3 cut(s)	216, 291, 503
PstI	CTGCAG	2 cut(s)	95, 241
PstNI	CAGNNNCTG	1 cut(s)	236
PsyI	GACNNNGTC	2 cut(s)	289, 560
RsaI	GTAC	2 cut(s)	347, 938
RsaNI	GTAC	2 cut(s)	346, 937
RseI	CAYNNNNRTG	3 cut(s)	257, 671, 857
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	5 cut(s)	59, 339, 626, 704, 1085
SatI	GCNGC	3 cut(s)	94, 138, 240
Sau3AI	GATC	1 cut(s)	715
Sau96I	GGNCC	3 cut(s)	216, 291, 503
ScrFI	CCNGG	2 cut(s)	207, 289
SduI	GDGCHC	3 cut(s)	552, 605, 646
SfaNI	GCATC	3 cut(s)	124, 145, 753
SfcI	CTRYAG	4 cut(s)	91, 237, 522, 535
SinI	GGWCC	2 cut(s)	216, 291
SmiMI	CAYNNNNRTG	3 cut(s)	257, 671, 857
SmlI	CTYRAG	2 cut(s)	97, 268
SmoI	CTYRAG	2 cut(s)	97, 268
Sse9I	AATT	9 cut(s)	17, 73, 244, 336, 577, 678, 931, 1082, 1088
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	205, 287
StyI	CCWWGG	2 cut(s)	352, 637
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	5 cut(s)	384, 599, 895, 911, 1080
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	9 cut(s)	17, 73, 244, 336, 577, 678, 931, 1082, 1088
TfiI	GAWTC	3 cut(s)	86, 167, 996
Tru1I	TTAA	5 cut(s)	59, 339, 626, 704, 1085
Tru9I	TTAA	5 cut(s)	59, 339, 626, 704, 1085
TscAI	CASTG	2 cut(s)	301, 651
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	3 cut(s)	93, 137, 239
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	7 cut(s)	10, 17, 19, 354, 409, 725, 841
TspRI	CASTG	2 cut(s)	301, 651
Tth111I	GACNNNGTC	2 cut(s)	289, 560
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	216, 291
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	73, 244
XcmI	CCANNNNNNNNNTGG	3 cut(s)	301, 445, 839
XmaJI	CCTAGG	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	384, 444
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.