Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000126.1

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Forward (+)

167942 .. 168781

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000126.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgaaagaaaactctcaattcatagttttcatcaccatcgccatcaccatttttggcttaacagccatagtgaattcccaaacagattcctgcagctcaagtctaaacctccggagtgtcaatctgccctttgatgcagcttccctcaactgcgatgctgtgtgggattctcagggttacatcctcagatactcacagaccacaccaggaacatggacctttgttctctcagcacctgcagcaaattcctacatagcaatggggttctcaagcaatggccagatgacggggtccagtgcgattgtggggtgggtgtcctcaacagagggaggactaattaagcggtactacctaggtgggacttcatcaaaccttgtggaggtcgacaaagggaaccttgttcttaccaacttctccttcatcacaaatcagtcttccacggtatacatggggttccagttggtggctgaccaaccacaaagtaggctcatatactcagttggcccaactgggttgcttcctgtagcacctaactacaggttgaccgagcactttgacaaggtctccaccaccataaattacattacaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

197

Amino Acids

21.26

Weight (kDa)

5.17

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	2 cut(s)	384, 444
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	73, 244
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	286, 379, 463
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	2 cut(s)	96, 140
AluI	AGCT	2 cut(s)	96, 140
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	2 cut(s)	277, 502
ApeKI	GCWGC	3 cut(s)	93, 137, 239
ApoI	RAATTY	2 cut(s)	73, 244
AspA2I	CCTAGG	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	216, 291, 503
AsuHPI	GGTGA	2 cut(s)	25, 37
AvaII	GGWCC	2 cut(s)	216, 291
AvrII	CCTAGG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	105, 149, 251
BccI	CCATC	2 cut(s)	44, 50
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	568
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	4 cut(s)	91, 237, 522, 535
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	94, 138, 240
BlnI	CCTAGG	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	95, 139, 241
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	216, 291
BmgT120I	GGNCC	3 cut(s)	216, 291, 503
BmiI	GGNNCC	3 cut(s)	292, 395, 455
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	124, 145
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	82, 253
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	2 cut(s)	352, 438
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 379, 463
Bse1I	ACTGG	3 cut(s)	294, 457, 514
Bse3DI	GCAATG	2 cut(s)	264, 280
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	352, 438
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	3 cut(s)	286, 379, 463
BseMI	GCAATG	2 cut(s)	264, 280
BseMII	CTCAG	4 cut(s)	185, 199, 243, 510
BseNI	ACTGG	3 cut(s)	294, 457, 514
BseXI	GCAGC	3 cut(s)	105, 149, 251
BshFI	GGCC	2 cut(s)	279, 504
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	3 cut(s)	286, 379, 463
BsmAI	GTCTC	1 cut(s)	568
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	279, 504
Bso31I	GGTCTC	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp13I	TCCGGA	1 cut(s)	111
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	279, 504
BspCNI	CTCAG	4 cut(s)	184, 198, 242, 509
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	292, 395, 455
BspMAI	CTGCAG	2 cut(s)	95, 241
BspMI	ACCTGC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	568
BsrDI	GCAATG	2 cut(s)	264, 280
BsrI	ACTGG	3 cut(s)	294, 457, 514
BssECI	CCNNGG	2 cut(s)	352, 438
BssNAI	GTATAC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	171, 185, 229, 496
BstDSI	CCRYGG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	4 cut(s)	91, 237, 522, 535
BstV1I	GCAGC	3 cut(s)	105, 149, 251
BstV2I	GAAGAC	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	279, 504
BtgI	CCRYGG	1 cut(s)	438
BtgZI	GCGATG	2 cut(s)	22, 168
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	216, 291, 503
Csp6I	GTAC	1 cut(s)	346
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	2 cut(s)	213, 448
CviJI	RGCY	8 cut(s)	57, 65, 96, 140, 279, 467, 487, 504
CviKI_1	RGCY	8 cut(s)	57, 65, 96, 140, 279, 467, 487, 504
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	171, 185, 229, 496
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	216, 291
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	216, 451
FaiI	YATR	9 cut(s)	23, 68, 214, 254, 445, 449, 491, 493, 575
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	212, 447
FblI	GTMKAC	2 cut(s)	384, 444
Fnu4HI	GCNGC	3 cut(s)	94, 138, 240
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	94, 138, 240
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	3 cut(s)	94, 138, 240
HaeIII	GGCC	2 cut(s)	279, 504
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	216, 451
HincII	GTYRAC	2 cut(s)	385, 543
HindII	GTYRAC	2 cut(s)	385, 543
HinfI	GANTC	2 cut(s)	86, 167
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	25, 37
Hpy166II	GTNNAC	3 cut(s)	385, 445, 543
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	385, 445, 543
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	93, 137, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	4 cut(s)	171, 185, 229, 496
Hsp92II	CATG	2 cut(s)	216, 451
Kpn2I	TCCGGA	1 cut(s)	111
Lsp1109I	GCAGC	3 cut(s)	105, 149, 251
LweI	GCATC	2 cut(s)	124, 145
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	552
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	5 cut(s)	17, 73, 244, 336, 577
MluNI	TGGCCA	1 cut(s)	279
MnlI	CCTC	7 cut(s)	119, 155, 194, 319, 323, 328, 373
Mox20I	TGGCCA	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	2 cut(s)	59, 339
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	216, 451
NlaIV	GGNNCC	3 cut(s)	292, 395, 455
PaqCI	CACCTGC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	86, 167
PflFI	GACNNNGTC	2 cut(s)	289, 560
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	95, 139, 241
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	292, 395, 455
PspPI	GGNCC	3 cut(s)	216, 291, 503
PstI	CTGCAG	2 cut(s)	95, 241
PstNI	CAGNNNCTG	1 cut(s)	236
PsyI	GACNNNGTC	2 cut(s)	289, 560
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	59, 339
SatI	GCNGC	3 cut(s)	94, 138, 240
Sau96I	GGNCC	3 cut(s)	216, 291, 503
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	124, 145
SfcI	CTRYAG	4 cut(s)	91, 237, 522, 535
SinI	GGWCC	2 cut(s)	216, 291
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	97, 268
SmoI	CTYRAG	2 cut(s)	97, 268
Sse9I	AATT	5 cut(s)	17, 73, 244, 336, 577
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	5 cut(s)	17, 73, 244, 336, 577
TfiI	GAWTC	2 cut(s)	86, 167
Tru1I	TTAA	2 cut(s)	59, 339
Tru9I	TTAA	2 cut(s)	59, 339
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	3 cut(s)	93, 137, 239
TspDTI	ATGAA	5 cut(s)	10, 17, 19, 354, 409
TspRI	CASTG	1 cut(s)	301
Tth111I	GACNNNGTC	2 cut(s)	289, 560
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	216, 291
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	73, 244
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 445
XmaJI	CCTAGG	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	384, 444
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.