Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Reverse (-)

18305792 .. 18308345

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGACCACCCAATTCATAGTTTTCATCCTCATCATCACCACCATCTTTGGCTTATCAGCCAAAGTGAATTCAGAGACAGATTCTTGCAGCTCAAGTCTCAATCTGCAGAATGCCAATTTGCCCTTTGATGCAGCTTCCCTCCACTGCCTTTCTGTTTGGGATGCTCACAATTACATCCTCAGATACTCACAGACCTCATCAAACATATGGACCTTTGTCCTCTCAACACCAGCTGTAAACTCATTCATAGCAATTGGGTTCTCAAGCAATGGACAGATGGTGGGGTCCAGTGCAATTGTGGGGTGGGTGTCCTCAACAGAACGCACGATCAAACAATATTTCTTGGGTGGGACTTCAGCAAACCTTGTGGAGCCTGACAAAGGGAACCTTCAGGTTGCTAGCAACTTCTCTTTAATTACATCTCAGTCATCTCGTCTGTACCTTGGCTTCCAGTTAGAGACCAGCCAGCCACAGACAAGGCTCCTATACTCTGTTGGGCCAGATGGGTTTCTGCCTGTGGCACCAAACTACAGGTTGATCGAGCACAGTGACAAGTTTTCTACCTCCATAAATTATATCACAGGTCAAAGCACATCGAGCTCACAAAGTCCATATTCAAAACTGAGGAAGAGCCATGGAGTGCTGAACATGCTAGGATGGGGCATTTTGCTGATAATTGGAGTAATAGTTGCCCGTTACTTAAAGCCATATGATCCACTTTGGTTTTATCTTCATACTTGCATTCAATCATTTGGGTTTATATTGGGAATAATAGGTGTTGTATGTGGATTTGTCTTGAACAATAAGCTCAATGCTGATGTCTCCACCCACAAAGCTCTTGGTATCATCATTCTTGTGCTTGGATGTCTTCAGGTGATGGCCCTTTTGGTTCGACCAGAGAAGGAGTCCAAAGCACGAAAATACTGGAATTGGTACCATCAAGGCGTAGGAAGGATTCTCATCATTTTTGCAATAGCAAATGTTTTCTATGGAATTCATTTAGGAGAAAAAGGAAAGGCATGGAATGCTGGCTATGGAGCTGTTCTTGCTATTTTAGTTGTTACTGCTGTTATTTTTGAGTTAAGATTGTGGTTTAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

369

Amino Acids

40.64

Weight (kDa)

9.4

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	936
AccB1I	GGYRCC	2 cut(s)	523, 936
AclWI	GGATC	1 cut(s)	710
AcsI	RAATTY	2 cut(s)	70, 996
AcuI	CTGAAG	3 cut(s)	342, 377, 857
AfaI	GTAC	2 cut(s)	443, 938
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	621, 749, 802
AluBI	AGCT	7 cut(s)	93, 137, 236, 603, 811, 839, 1043
AluI	AGCT	7 cut(s)	93, 137, 236, 603, 811, 839, 1043
Alw21I	GWGCWC	2 cut(s)	549, 605
Alw26I	GTCTC	4 cut(s)	71, 104, 455, 829
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	2 cut(s)	500, 882
ApeKI	GCWGC	2 cut(s)	90, 134
ApoI	RAATTY	2 cut(s)	70, 996
Asp718I	GGTACC	1 cut(s)	936
AspS9I	GGNCC	4 cut(s)	213, 288, 500, 883
AsuHPI	GGTGA	2 cut(s)	31, 889
AsuNHI	GCTAGC	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	213, 288
BanI	GGYRCC	2 cut(s)	523, 936
BanII	GRGCYC	1 cut(s)	605
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbsI	GAAGAC	2 cut(s)	11, 863
Bbv12I	GWGCWC	2 cut(s)	549, 605
BbvI	GCAGC	2 cut(s)	102, 146
BccI	CCATC	6 cut(s)	53, 274, 500, 654, 874, 948
BcoDI	GTCTC	4 cut(s)	71, 104, 455, 829
BfaI	CTAG	2 cut(s)	402, 656
BfmI	CTRYAG	2 cut(s)	107, 532
BisI	GCNGC	2 cut(s)	91, 135
BlsI	GCNGC	2 cut(s)	92, 136
Bme18I	GGWCC	2 cut(s)	213, 288
BmgT120I	GGNCC	4 cut(s)	213, 288, 500, 883
BmiI	GGNNCC	6 cut(s)	289, 375, 389, 485, 525, 938
BmsI	GCATC	2 cut(s)	121, 154
BmtI	GCTAGC	1 cut(s)	405
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	2 cut(s)	11, 863
BpuEI	CTTGAG	2 cut(s)	79, 250
BsaBI	GATNNNNATC	1 cut(s)	962
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	445, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	291, 454, 932
Bse3DI	GCAATG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	962
BseDI	CCNNGG	2 cut(s)	445, 637
BseGI	GGATG	5 cut(s)	27, 169, 177, 665, 872
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	196, 440, 617
BseNI	ACTGG	3 cut(s)	291, 454, 932
BseXI	GCAGC	2 cut(s)	102, 146
BshFI	GGCC	2 cut(s)	502, 884
BshNI	GGYRCC	2 cut(s)	523, 936
BsiHKAI	GWGCWC	2 cut(s)	549, 605
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	4 cut(s)	71, 104, 455, 829
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	3 cut(s)	118, 744, 1033
BsnI	GGCC	2 cut(s)	502, 884
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	549, 605
Bsp143I	GATC	3 cut(s)	330, 540, 715
Bsp19I	CCATGG	1 cut(s)	637
BspANI	GGCC	2 cut(s)	502, 884
BspCNI	CTCAG	3 cut(s)	195, 439, 618
BspLI	GGNNCC	6 cut(s)	289, 375, 389, 485, 525, 938
BspMAI	CTGCAG	1 cut(s)	111
BspOI	GCTAGC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	710
BspQI	GCTCTTC	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	523, 936
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	291, 454, 932
BssECI	CCNNGG	2 cut(s)	445, 637
BssMI	GATC	3 cut(s)	330, 540, 715
BssT1I	CCWWGG	2 cut(s)	445, 637
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstC8I	GCNNGC	3 cut(s)	403, 470, 1033
BstDEI	CTNAG	3 cut(s)	182, 426, 626
BstDSI	CCRYGG	1 cut(s)	637
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	5 cut(s)	27, 169, 177, 665, 872
BstKTI	GATC	3 cut(s)	333, 543, 718
BstMAI	GTCTC	4 cut(s)	71, 104, 455, 829
BstMBI	GATC	3 cut(s)	330, 540, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	600, 652, 1028, 1049
BstNSI	RCATGY	1 cut(s)	655
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	107, 532
BstV1I	GCAGC	2 cut(s)	102, 146
BstV2I	GAAGAC	2 cut(s)	11, 863
BsuRI	GGCC	2 cut(s)	502, 884
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	5 cut(s)	27, 169, 177, 665, 872
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	3 cut(s)	145, 298, 556
Cac8I	GCNNGC	3 cut(s)	403, 470, 1033
Cfr13I	GGNCC	4 cut(s)	213, 288, 500, 883
Csp6I	GTAC	2 cut(s)	442, 937
CspCI	CAANNNNNGTGG	4 cut(s)	31, 66, 351, 386
CviAII	CATG	3 cut(s)	638, 652, 1023
CviQI	GTAC	2 cut(s)	442, 937
DdeI	CTNAG	3 cut(s)	182, 426, 626
DpnI	GATC	3 cut(s)	332, 542, 717
DpnII	GATC	3 cut(s)	330, 540, 715
DraI	TTTAAA	1 cut(s)	1099
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Ecl136II	GAGCTC	1 cut(s)	603
Eco130I	CCWWGG	2 cut(s)	445, 637
Eco24I	GRGCYC	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	213, 288
Eco53kI	GAGCTC	1 cut(s)	603
Eco57I	CTGAAG	3 cut(s)	342, 377, 857
EcoICRI	GAGCTC	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoRI	GAATTC	2 cut(s)	70, 996
EcoT14I	CCWWGG	2 cut(s)	445, 637
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	445, 637
FaeI	CATG	3 cut(s)	641, 655, 1026
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	637, 651, 1022
FauNDI	CATATG	2 cut(s)	209, 712
Fnu4HI	GCNGC	2 cut(s)	91, 135
FokI	GGATG	5 cut(s)	14, 164, 176, 672, 879
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	91, 135
FspBI	CTAG	2 cut(s)	402, 656
GluI	GCNGC	2 cut(s)	91, 135
HaeIII	GGCC	2 cut(s)	502, 884
Hin1II	CATG	3 cut(s)	641, 655, 1026
HinfI	GANTC	3 cut(s)	83, 908, 958
HphI	GGTGA	2 cut(s)	31, 889
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	76, 185
Hpy188III	TCNNGA	1 cut(s)	799
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	401, 898, 948
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4V	TGCA	6 cut(s)	90, 109, 134, 296, 744, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	600, 652, 1028, 1049
HpyF3I	CTNAG	3 cut(s)	182, 426, 626
Hsp92II	CATG	3 cut(s)	641, 655, 1026
KpnI	GGTACC	1 cut(s)	940
Kzo9I	GATC	3 cut(s)	330, 540, 715
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	3 cut(s)	373, 489, 1040
Lsp1109I	GCAGC	2 cut(s)	102, 146
LweI	GCATC	2 cut(s)	121, 154
MaeI	CTAG	2 cut(s)	402, 656
MaeIII	GTNAC	3 cut(s)	551, 698, 1063
MalI	GATC	3 cut(s)	332, 542, 717
MboI	GATC	3 cut(s)	330, 540, 715
MboII	GAAGA	4 cut(s)	16, 643, 725, 863
MfeI	CAATTG	2 cut(s)	255, 297
MhlI	GDGCHC	2 cut(s)	549, 605
MlyI	GAGTC	1 cut(s)	917
MnlI	CCTC	8 cut(s)	41, 152, 191, 208, 233, 325, 577, 621
MseI	TTAA	4 cut(s)	416, 704, 1085, 1098
MslI	CAYNNNNRTG	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	236
MunI	CAATTG	2 cut(s)	255, 297
Mva1269I	GAATGC	3 cut(s)	118, 744, 1033
MwoI	GCNNNNNNNGC	4 cut(s)	600, 652, 1028, 1049
NcoI	CCATGG	1 cut(s)	637
NdeI	CATATG	2 cut(s)	209, 712
NdeII	GATC	3 cut(s)	330, 540, 715
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	3 cut(s)	641, 655, 1026
NlaIV	GGNNCC	6 cut(s)	289, 375, 389, 485, 525, 938
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	3 cut(s)	118, 744, 1033
PfeI	GAWTC	2 cut(s)	83, 958
PkrI	GCNGC	2 cut(s)	92, 136
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
PshAI	GACNNNNGTC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	605
PspN4I	GGNNCC	6 cut(s)	289, 375, 389, 485, 525, 938
PspPI	GGNCC	4 cut(s)	213, 288, 500, 883
PstI	CTGCAG	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	443, 938
RsaNI	GTAC	2 cut(s)	442, 937
RseI	CAYNNNNRTG	1 cut(s)	857
SacI	GAGCTC	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	416, 704, 1085, 1098
SatI	GCNGC	2 cut(s)	91, 135
Sau3AI	GATC	3 cut(s)	330, 540, 715
Sau96I	GGNCC	4 cut(s)	213, 288, 500, 883
SchI	GAGTC	1 cut(s)	917
SduI	GDGCHC	2 cut(s)	549, 605
SfaNI	GCATC	2 cut(s)	121, 154
SfcI	CTRYAG	2 cut(s)	107, 532
SinI	GGWCC	2 cut(s)	213, 288
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	2 cut(s)	94, 265
SmoI	CTYRAG	2 cut(s)	94, 265
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	402, 656
SstI	GAGCTC	1 cut(s)	605
StyI	CCWWGG	2 cut(s)	445, 637
TaaI	ACNGT	1 cut(s)	551
TaqI	TCGA	3 cut(s)	543, 599, 895
TfiI	GAWTC	2 cut(s)	83, 958
Tru1I	TTAA	4 cut(s)	416, 704, 1085, 1098
Tru9I	TTAA	4 cut(s)	416, 704, 1085, 1098
TscAI	CASTG	3 cut(s)	152, 298, 556
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	90, 134
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	6 cut(s)	7, 16, 17, 238, 725, 989
TspRI	CASTG	3 cut(s)	152, 298, 556
VpaK11BI	GGWCC	2 cut(s)	213, 288
XagI	CCTNNNNNAGG	1 cut(s)	381
XapI	RAATTY	2 cut(s)	70, 996
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	2 cut(s)	298, 839
XspI	CTAG	2 cut(s)	402, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.