Rroxscaffold_7G00186760

Ferric-chelate reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005090
Physical Location & Seq
Forward (+)
26102307 .. 26104536
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186760.1

Sequence Viewer

Length: 1038 bp
ATGAAAGAAAACTCTCAATTCATAGTTTTCATCACCATCGCCATCGCCATTTTTGGCTTATCAGCCATAGTGAATTCCCAAACAGATTCCTGCAGCTCAAGTCTAAACCTCCAGAATGTCAACCTGCCCTTTGATGCAGCTTCCCTCAACTGCCATGTAGTTTGGGATTCTCAGAGTTACATCCTCAGATACTCACAGACCACACCAGGAACATGGACCTTTGTTCTCTCAGCACCTGCAGCAAATTCCTACATAGCAATGGGGTTCTCAAGCAATGGCCAGATGACGGGGTCCAGTGCGATTGTGGGGTGGGTGTCCTCAACAGAGGGAGGAGTAATTAAGCGGTACTACTTAGGTGGGACTTCATCAGACCTTGTGGAGGTCGACAAAGGGAACCTAGTTCTTACCAACTTCTCCTTCATCACAAATCAGTCTTCCACGGTATACATGGGGTTCCAGTTGGTGGCTGACCAACCACAAAATAGGCTCATATACTCAGTTGGCCCAACTGGGTTGCTTCCTGTAGCACCTAACTACAGGTTGACCGAGCACTTTGACAAGGTCTCCACCACCATCAATTACATTACAGAACCAAGTGACCAATCGATGCATAGGTCAAACATCGAGCACAGGAAGTCCATATACAAGATTAAGAAGGAGCCATGGAGCACTGAATATGCTTGGATGGGGCATTTTGATGATAATTGGAGTGTCATTTGTGGATTTGTCTTAGACAATAAGACTAATGATGATGTCTCCACCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTGGATGTCTTCAGGTGATGGCATTTTTGGCTCGACCAAATAAGGTATCGAAAGCACGAAAATACTGGAATTGGTACCATCAAAGCGTGGGAAGGCTTCTGATTATTCTTGCAGTTGCAAATGTTTTCTACGGAATCCATTTGGGAGATGAAGGAACGGGATGGAATGCTGGATATGGAGCTGTTCTTGCTATCTTGGTTGTTATTGCTGTTATTCTCGAATTAAAATTGTGGTTTAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

345

Amino Acids

38.3

Weight (kDa)

7.69

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 63 - 137 4.1e-07 DOMON domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 2 cut(s) 132, 244
Acc65I GGTACC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 867
AccB7I CCANNNNNTGG 1 cut(s) 463
AccI GTMKAC 2 cut(s) 384, 444
AciI CCGC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 73, 244
AcuI CTGAAG 1 cut(s) 788
AfaI GTAC 2 cut(s) 347, 869
AfiI CCNNNNNNNGG 3 cut(s) 286, 379, 463
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 96, 140, 770, 974
AluI AGCT 4 cut(s) 96, 140, 770, 974
Alw21I GWGCWC 3 cut(s) 552, 630, 671
Alw26I GTCTC 2 cut(s) 568, 760
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 2 cut(s) 277, 502
ApeKI GCWGC 3 cut(s) 93, 137, 239
ApoI RAATTY 2 cut(s) 73, 244
Asp718I GGTACC 1 cut(s) 867
AspS9I GGNCC 3 cut(s) 216, 291, 503
AsuHPI GGTGA 2 cut(s) 25, 820
AvaII GGWCC 2 cut(s) 216, 291
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 1 cut(s) 867
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbsI GAAGAC 2 cut(s) 426, 794
Bbv12I GWGCWC 3 cut(s) 552, 630, 671
BbvI GCAGC 3 cut(s) 105, 149, 251
BccI CCATC 7 cut(s) 44, 50, 581, 679, 805, 879, 948
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 568, 760
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 4 cut(s) 91, 237, 522, 535
BfuAI ACCTGC 2 cut(s) 132, 244
BisI GCNGC 3 cut(s) 94, 138, 240
BlsI GCNGC 3 cut(s) 95, 139, 241
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 216, 291
BmgT120I GGNCC 3 cut(s) 216, 291, 503
BmiI GGNNCC 5 cut(s) 292, 395, 455, 660, 869
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 124, 597
BmuI ACTGGG 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 426, 794
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 82, 253
Bsa29I ATCGAT 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 438, 662
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 379, 463
Bse1I ACTGG 4 cut(s) 294, 457, 514, 863
Bse3DI GCAATG 2 cut(s) 264, 280
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 438, 662
BseGI GGATG 4 cut(s) 180, 690, 803, 959
BseLI CCNNNNNNNGG 3 cut(s) 286, 379, 463
BseMI GCAATG 2 cut(s) 264, 280
BseMII CTCAG 4 cut(s) 185, 199, 243, 510
BseNI ACTGG 4 cut(s) 294, 457, 514, 863
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 105, 149, 251
BshFI GGCC 2 cut(s) 279, 504
BshNI GGYRCC 1 cut(s) 867
BshVI ATCGAT 1 cut(s) 605
BsiHKAI GWGCWC 3 cut(s) 552, 630, 671
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 3 cut(s) 286, 379, 463
BsmAI GTCTC 2 cut(s) 568, 760
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 2 cut(s) 279, 504
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 3 cut(s) 552, 630, 671
Bsp19I CCATGG 1 cut(s) 662
BspACI CCGC 1 cut(s) 343
BspANI GGCC 2 cut(s) 279, 504
BspCNI CTCAG 4 cut(s) 184, 198, 242, 509
BspDI ATCGAT 1 cut(s) 605
BspLI GGNNCC 5 cut(s) 292, 395, 455, 660, 869
BspMAI CTGCAG 2 cut(s) 95, 241
BspMI ACCTGC 2 cut(s) 132, 244
BspT107I GGYRCC 1 cut(s) 867
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 2 cut(s) 264, 280
BsrI ACTGG 4 cut(s) 294, 457, 514, 863
BssECI CCNNGG 2 cut(s) 438, 662
BssNAI GTATAC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 662
Bst1107I GTATAC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 442
BstDEI CTNAG 6 cut(s) 171, 185, 229, 352, 496, 730
BstDSI CCRYGG 2 cut(s) 438, 662
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 180, 690, 803, 959
BstMAI GTCTC 2 cut(s) 568, 760
BstMWI GCNNNNNNNGC 3 cut(s) 239, 821, 980
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 4 cut(s) 91, 237, 522, 535
BstV1I GCAGC 3 cut(s) 105, 149, 251
BstV2I GAAGAC 2 cut(s) 426, 794
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 605
BsuRI GGCC 2 cut(s) 279, 504
BsuTUI ATCGAT 1 cut(s) 605
BtgI CCRYGG 2 cut(s) 438, 662
BtgZI GCGATG 2 cut(s) 22, 28
BtsCI GGATG 4 cut(s) 180, 690, 803, 959
BtsIMutI CAGTG 2 cut(s) 301, 669
BveI ACCTGC 2 cut(s) 132, 244
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 216, 291, 503
ClaI ATCGAT 1 cut(s) 605
Csp6I GTAC 2 cut(s) 346, 868
CviAII CATG 4 cut(s) 155, 213, 448, 663
CviQI GTAC 2 cut(s) 346, 868
DdeI CTNAG 6 cut(s) 171, 185, 229, 352, 496, 730
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 662
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 216, 291
Eco57I CTGAAG 1 cut(s) 788
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 662
EcoT22I ATGCAT 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 4 cut(s) 158, 216, 451, 666
FaqI GGGAC 1 cut(s) 373
FatI CATG 4 cut(s) 154, 212, 447, 662
FblI GTMKAC 2 cut(s) 384, 444
Fnu4HI GCNGC 3 cut(s) 94, 138, 240
FokI GGATG 4 cut(s) 167, 697, 810, 966
Fsp4HI GCNGC 3 cut(s) 94, 138, 240
FspBI CTAG 1 cut(s) 398
GluI GCNGC 3 cut(s) 94, 138, 240
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 2 cut(s) 279, 504
Hin1II CATG 4 cut(s) 158, 216, 451, 666
HincII GTYRAC 3 cut(s) 121, 385, 543
HindII GTYRAC 3 cut(s) 121, 385, 543
HinfI GANTC 3 cut(s) 86, 167, 927
HphI GGTGA 2 cut(s) 25, 820
Hpy166II GTNNAC 4 cut(s) 121, 385, 445, 543
Hpy188I TCNGA 4 cut(s) 174, 188, 370, 894
Hpy188III TCNNGA 2 cut(s) 112, 1010
Hpy8I GTNNAC 4 cut(s) 121, 385, 445, 543
HpyAV CCTTC 4 cut(s) 427, 649, 879, 938
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 6 cut(s) 93, 137, 239, 610, 905, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 821, 980
HpyF3I CTNAG 6 cut(s) 171, 185, 229, 352, 496, 730
Hsp92II CATG 4 cut(s) 158, 216, 451, 666
KpnI GGTACC 1 cut(s) 871
LmnI GCTCC 3 cut(s) 658, 666, 971
Lsp1109I GCAGC 3 cut(s) 105, 149, 251
LweI GCATC 2 cut(s) 124, 597
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 176, 596
MboII GAAGA 3 cut(s) 426, 772, 794
MhlI GDGCHC 3 cut(s) 552, 630, 671
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 9 cut(s) 17, 73, 244, 336, 577, 703, 862, 1013, 1019
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 7 cut(s) 119, 155, 194, 319, 323, 328, 373
Mox20I TGGCCA 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 612
MscI TGGCCA 1 cut(s) 279
MseI TTAA 3 cut(s) 339, 651, 1016
MslI CAYNNNNRTG 3 cut(s) 257, 696, 788
Msp20I TGGCCA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 239, 821, 980
NcoI CCATGG 1 cut(s) 662
NlaIII CATG 4 cut(s) 158, 216, 451, 666
NlaIV GGNNCC 5 cut(s) 292, 395, 455, 660, 869
NmuCI GTSAC 1 cut(s) 596
NsiI ATGCAT 1 cut(s) 612
PaqCI CACCTGC 1 cut(s) 244
PctI GAATGC 1 cut(s) 964
PfeI GAWTC 3 cut(s) 86, 167, 927
PflFI GACNNNGTC 2 cut(s) 289, 560
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 3 cut(s) 95, 139, 241
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 5 cut(s) 292, 395, 455, 660, 869
PspPI GGNCC 3 cut(s) 216, 291, 503
PstI CTGCAG 2 cut(s) 95, 241
PstNI CAGNNNCTG 1 cut(s) 236
PsyI GACNNNGTC 2 cut(s) 289, 560
RsaI GTAC 2 cut(s) 347, 869
RsaNI GTAC 2 cut(s) 346, 868
RseI CAYNNNNRTG 3 cut(s) 257, 696, 788
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 339, 651, 1016
SatI GCNGC 3 cut(s) 94, 138, 240
Sau96I GGNCC 3 cut(s) 216, 291, 503
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 3 cut(s) 552, 630, 671
SfaNI GCATC 2 cut(s) 124, 597
SfcI CTRYAG 4 cut(s) 91, 237, 522, 535
SinI GGWCC 2 cut(s) 216, 291
SmiMI CAYNNNNRTG 3 cut(s) 257, 696, 788
SmlI CTYRAG 2 cut(s) 97, 268
SmoI CTYRAG 2 cut(s) 97, 268
Sse9I AATT 9 cut(s) 17, 73, 244, 336, 577, 703, 862, 1013, 1019
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 6 cut(s) 384, 605, 624, 826, 842, 1011
TaqII GACCGA 1 cut(s) 560
TasI AATT 9 cut(s) 17, 73, 244, 336, 577, 703, 862, 1013, 1019
TfiI GAWTC 3 cut(s) 86, 167, 927
Tru1I TTAA 3 cut(s) 339, 651, 1016
Tru9I TTAA 3 cut(s) 339, 651, 1016
TscAI CASTG 2 cut(s) 301, 676
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 3 cut(s) 93, 137, 239
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 7 cut(s) 10, 17, 19, 354, 409, 772, 957
TspGWI ACGGA 1 cut(s) 939
TspRI CASTG 2 cut(s) 301, 676
Tth111I GACNNNGTC 2 cut(s) 289, 560
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 216, 291
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 2 cut(s) 73, 244
XcmI CCANNNNNNNNNTGG 3 cut(s) 301, 445, 770
XmiI GTMKAC 2 cut(s) 384, 444
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.