Rh3DG033700

Ferric-chelate reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005090
Physical Location & Seq
Forward (+)
2254308 .. 2254781
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG033700.1

Sequence Viewer

Length: 327 bp
ATGGGGCAATCTCTGATGATAATTGGAGTAATAGTTGCTCGTCACTTAAAGTCCTATGATCCACTTTGGTTTTACCTTCATATTGGCATCCAATCATTCGCCTTTGTGTTTGGAATAATAGGTGTCATTTGTGGATTTGTCTTAGACAATAAGACTAATGCTGATGTCTCCACCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTAGATGTCTTCAGGTGATGGCATTTTTGGCTCGACCAGATAAGGTATCGAAAGCGCGAAAATACTGGAATTGGTACCATCAAACCGTGGGAAGGCTTCTGATTATTCTTGCTGAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

108

Amino Acids

12.29

Weight (kDa)

9.7

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 2 - 106 3.8e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 279
AccII CGCG 1 cut(s) 262
AclWI GGATC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 297
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 206
BccI CCATC 2 cut(s) 217, 291
BcoDI GTCTC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 281
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 58
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 292, 324
BstDEI CTNAG 2 cut(s) 142, 206
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 87
CfoI GCGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 3 cut(s) 182, 236, 301
CviKI_1 RGCY 3 cut(s) 182, 236, 301
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 142, 206
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 200
FaiI YATR 2 cut(s) 57, 81
FokI GGATG 1 cut(s) 74
GlaI GCGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 15, 306
HpyAV CCTTC 2 cut(s) 86, 291
HpyCH4III ACNGT 2 cut(s) 292, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 142, 206
HspAI GCGC 1 cut(s) 260
KpnI GGTACC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 203, 255, 256
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 184, 206
MluCI AATT 2 cut(s) 21, 274
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 200
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 47
Sau3AI GATC 1 cut(s) 58
SetI ASST 5 cut(s) 78, 124, 184, 222, 252
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 323
SgeI CNNG 9 cut(s) 51, 197, 212, 230, 249, 254, 273, 283, 304
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 2 cut(s) 21, 274
TaaI ACNGT 2 cut(s) 292, 324
TaqI TCGA 2 cut(s) 238, 254
TasI AATT 2 cut(s) 21, 274
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 68, 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.