Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Reverse (-)

23248389 .. 23250559

Gene Structure 2171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1146200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAGGCATTCATAGCTTCCATCATCATCGTCATCTTTGGCTTATCAGCCAGAGTGAATTCACAAACAGATTCATGCAGCTCGAGTCTAAACTTGCAGAATGTCAATTTGCCATTTGATGCAGCTTCTCTCAATTGCCTTGCTGTTTGGGATGCTCATAACTACATCCTCAGATACTCACAAACTTCATCAAACCTATGGACCTTTGTCCTCTCAGCACCAGCTGCTAATTCATACATTGCAATTGGGTTCTCAAGCAACGGCCAGATGGTGGGTTCCAGTGCAATTGTGGGGTGGATGTCCCCAACAGGAGGAGAGATCAAACCTTATTACTTGGGGGGGACCTCACCTAACCTTGTGGAGCCCAACAAGGGGAGCCTTCAAGTTGGAACCAACTTTTCCTTAATTACATCCCAGTCCAACAGATTGTACCTAGGGTTCCAATTGGAGACCAATCAGCCACTATCAAGGCTCATATACTCTGTTGGACCAGATGGGTTGCTGCCTGTGGCTCCCAACTACAGATTGAGTGAGCATAGTGACAAGGTCTCCACCTCCATAAATTATATCACAGGTCAAAGTAAATCGAGCACGGAGAGTCCACATTCAAGACTGAGGAAGAGCCATGGAGTACTAAACATGCTAGGATGGGGCATTTTAATGATAATTGGAGTAATAGTTGCTCGTTACTTGAAACCATATGATCCACTTTGGTTTTATCTTCATACTTGCATTCAGTCATTTGGGCTTATATTCGGAATAATAGGTGTTTTTTGTGGATTTGTCTTAAAAAATAAGCTCAATGCTGATGTCTCCACCCACAAATCTCTTGGTATCTTCATTCTTGTGCTTGGTTGTCTTCAGGTCATGGCTCTTTTGATTCGACCGGAGAAGGAATCGAAGGTGCGAAAGTACTGGAACTGGTACCATCATGGTGTGGGAAGGATTCTGATCATTTTTGCAGTAGCAAATGTTTTCTATGGAATCCATTTGGGAGAGAAAGGAAAGGGATGGAGTGCTGGCTATGGAGTTGTTATTGCTATCTTATTTGTTACTGCTTTTATTTTTGAATTAAGATTGTGGCTTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

365

Amino Acids

40.14

Weight (kDa)

9.53

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOMON	PF03351	53 - 123	2.9e-08	DOMON domain
Cytochrom_B561	PF03188	209 - 329	1.1e-07	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	924
AccB7I	CCANNNNNTGG	1 cut(s)	271
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	4 cut(s)	431, 633, 914, 926
AfiI	CCNNNNNNNGG	4 cut(s)	271, 311, 371, 372
AgsI	TTSAA	4 cut(s)	383, 609, 694, 1070
AluBI	AGCT	5 cut(s)	17, 81, 125, 224, 799
AluI	AGCT	5 cut(s)	17, 81, 125, 224, 799
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	443, 553, 817
AlwI	GGATC	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	78, 122, 224, 502
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	924
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	201, 342, 488
AsuHPI	GGTGA	1 cut(s)	339
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	3 cut(s)	201, 342, 488
AvrII	CCTAGG	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	924
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	4 cut(s)	90, 134, 211, 489
BccI	CCATC	6 cut(s)	29, 262, 488, 642, 936, 1005
BceAI	ACGGC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	3 cut(s)	443, 553, 817
BfaI	CTAG	2 cut(s)	434, 644
BfmI	CTRYAG	1 cut(s)	520
BisI	GCNGC	4 cut(s)	79, 123, 225, 503
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	4 cut(s)	80, 124, 226, 504
BmcAI	AGTACT	2 cut(s)	633, 914
Bme18I	GGWCC	3 cut(s)	201, 342, 488
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	3 cut(s)	201, 342, 488
BmiI	GGNNCC	8 cut(s)	277, 343, 363, 377, 391, 440, 513, 926
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	109, 142
BmuI	ACTGGG	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	950
BsaI	GGTCTC	2 cut(s)	443, 553
BsaJI	CCNNGG	2 cut(s)	433, 625
BsaWI	WCCGGW	1 cut(s)	886
BsaXI	ACNNNNNCTCC	4 cut(s)	533, 563, 663, 693
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 311, 371, 372
Bse1I	ACTGG	4 cut(s)	279, 415, 920, 926
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	950
BseDI	CCNNGG	2 cut(s)	433, 625
BseGI	GGATG	6 cut(s)	157, 165, 303, 410, 653, 1016
BseJI	GATNNNNATC	1 cut(s)	950
BseLI	CCNNNNNNNGG	4 cut(s)	271, 311, 371, 372
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	184, 228, 605
BseNI	ACTGG	4 cut(s)	279, 415, 920, 926
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	4 cut(s)	90, 134, 211, 489
Bsh1285I	CGRYCG	1 cut(s)	887
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	924
BsiEI	CGRYCG	1 cut(s)	887
BsiHKAI	GWGCWC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	2 cut(s)	286, 355
BslI	CCNNNNNNNGG	4 cut(s)	271, 311, 371, 372
BsmAI	GTCTC	3 cut(s)	443, 553, 817
BsmFI	GGGAC	2 cut(s)	286, 355
BsmI	GAATGC	2 cut(s)	8, 732
BsnI	GGCC	1 cut(s)	264
Bso31I	GGTCTC	2 cut(s)	443, 553
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	366, 593
Bsp143I	GATC	3 cut(s)	318, 703, 951
Bsp19I	CCATGG	1 cut(s)	625
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	3 cut(s)	183, 227, 606
BspLI	GGNNCC	8 cut(s)	277, 343, 363, 377, 391, 440, 513, 926
BspPI	GGATC	1 cut(s)	698
BspQI	GCTCTTC	1 cut(s)	614
BspT107I	GGYRCC	1 cut(s)	924
BspTNI	GGTCTC	2 cut(s)	443, 553
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	4 cut(s)	279, 415, 920, 926
BssECI	CCNNGG	2 cut(s)	433, 625
BssMI	GATC	3 cut(s)	318, 703, 951
BssT1I	CCWWGG	2 cut(s)	433, 625
Bst6I	CTCTTC	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	1021
BstDEI	CTNAG	4 cut(s)	170, 214, 614, 1085
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	6 cut(s)	157, 165, 303, 410, 653, 1016
BstKTI	GATC	3 cut(s)	321, 706, 954
BstMAI	GTCTC	3 cut(s)	443, 553, 817
BstMBI	GATC	3 cut(s)	318, 703, 951
BstMCI	CGRYCG	1 cut(s)	887
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 224
BstNSI	RCATGY	1 cut(s)	643
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	90, 134, 211, 489
BstV2I	GAAGAC	1 cut(s)	851
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	6 cut(s)	157, 165, 303, 410, 653, 1016
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	1021
Cfr13I	GGNCC	3 cut(s)	201, 342, 488
Csp6I	GTAC	4 cut(s)	430, 632, 913, 925
CviAII	CATG	5 cut(s)	75, 626, 640, 868, 932
CviQI	GTAC	4 cut(s)	430, 632, 913, 925
DdeI	CTNAG	4 cut(s)	170, 214, 614, 1085
DpnI	GATC	3 cut(s)	320, 705, 953
DpnII	GATC	3 cut(s)	318, 703, 951
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	2 cut(s)	433, 625
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	2 cut(s)	443, 553
Eco47I	GGWCC	3 cut(s)	201, 342, 488
Eco57I	CTGAAG	1 cut(s)	845
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	433, 625
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	433, 625
FaeI	CATG	5 cut(s)	78, 629, 643, 871, 935
FaqI	GGGAC	2 cut(s)	286, 355
FatI	CATG	5 cut(s)	74, 625, 639, 867, 931
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	951
Fnu4HI	GCNGC	4 cut(s)	79, 123, 225, 503
FokI	GGATG	6 cut(s)	152, 164, 310, 397, 660, 1023
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	4 cut(s)	79, 123, 225, 503
FspBI	CTAG	2 cut(s)	434, 644
GluI	GCNGC	4 cut(s)	79, 123, 225, 503
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	5 cut(s)	78, 629, 643, 871, 935
HinfI	GANTC	7 cut(s)	71, 85, 598, 880, 896, 946, 984
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	3 cut(s)	173, 758, 951
Hpy188III	TCNNGA	1 cut(s)	609
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	4 cut(s)	389, 886, 895, 936
HpyCH4V	TGCA	7 cut(s)	78, 97, 122, 242, 284, 732, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 224
HpyF3I	CTNAG	4 cut(s)	170, 214, 614, 1085
Hsp92II	CATG	5 cut(s)	78, 629, 643, 871, 935
KpnI	GGTACC	1 cut(s)	928
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	3 cut(s)	318, 703, 951
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	3 cut(s)	361, 375, 517
Lsp1109I	GCAGC	4 cut(s)	90, 134, 211, 489
LweI	GCATC	2 cut(s)	109, 142
MaeI	CTAG	2 cut(s)	434, 644
MaeIII	GTNAC	3 cut(s)	539, 686, 1051
MalI	GATC	3 cut(s)	320, 705, 953
MboI	GATC	3 cut(s)	318, 703, 951
MboII	GAAGA	4 cut(s)	631, 713, 829, 851
MfeI	CAATTG	4 cut(s)	133, 243, 285, 443
MhlI	GDGCHC	2 cut(s)	366, 593
MlyI	GAGTC	2 cut(s)	94, 607
MmeI	TCCRAC	3 cut(s)	367, 444, 466
MnlI	CCTC	6 cut(s)	179, 221, 305, 355, 565, 609
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	404, 659, 788, 1073
MslI	CAYNNNNRTG	3 cut(s)	659, 845, 933
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	887
MunI	CAATTG	4 cut(s)	133, 243, 285, 443
Mva1269I	GAATGC	2 cut(s)	8, 732
MwoI	GCNNNNNNNGC	2 cut(s)	14, 224
NcoI	CCATGG	1 cut(s)	625
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	318, 703, 951
NlaIII	CATG	5 cut(s)	78, 629, 643, 871, 935
NlaIV	GGNNCC	8 cut(s)	277, 343, 363, 377, 391, 440, 513, 926
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	1 cut(s)	643
PaeR7I	CTCGAG	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	614
PctI	GAATGC	2 cut(s)	8, 732
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	71, 880, 896, 946, 984
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	80, 124, 226, 504
PleI	GAGTC	2 cut(s)	93, 606
PpsI	GAGTC	2 cut(s)	93, 606
PpuMI	RGGWCCY	1 cut(s)	342
PshAI	GACNNNNGTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	342
PspN4I	GGNNCC	8 cut(s)	277, 343, 363, 377, 391, 440, 513, 926
PspPI	GGNCC	3 cut(s)	201, 342, 488
PspPPI	RGGWCCY	1 cut(s)	342
PspXI	VCTCGAGB	1 cut(s)	82
PsrI	GAACNNNNNNTAC	2 cut(s)	422, 454
PsyI	GACNNNGTC	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	4 cut(s)	431, 633, 914, 926
RsaNI	GTAC	4 cut(s)	430, 632, 913, 925
RseI	CAYNNNNRTG	3 cut(s)	659, 845, 933
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	4 cut(s)	404, 659, 788, 1073
SatI	GCNGC	4 cut(s)	79, 123, 225, 503
Sau3AI	GATC	3 cut(s)	318, 703, 951
Sau96I	GGNCC	3 cut(s)	201, 342, 488
ScaI	AGTACT	2 cut(s)	633, 914
SchI	GAGTC	2 cut(s)	94, 607
SduI	GDGCHC	2 cut(s)	366, 593
SfaNI	GCATC	2 cut(s)	109, 142
SfcI	CTRYAG	1 cut(s)	520
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	3 cut(s)	201, 342, 488
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	3 cut(s)	659, 845, 933
SmlI	CTYRAG	2 cut(s)	82, 253
SmoI	CTYRAG	2 cut(s)	82, 253
SspMI	CTAG	2 cut(s)	434, 644
StyI	CCWWGG	2 cut(s)	433, 625
TaqI	TCGA	4 cut(s)	83, 587, 883, 899
TatI	WGTACW	2 cut(s)	631, 912
TfiI	GAWTC	5 cut(s)	71, 880, 896, 946, 984
Tru1I	TTAA	4 cut(s)	404, 659, 788, 1073
Tru9I	TTAA	4 cut(s)	404, 659, 788, 1073
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	4 cut(s)	78, 122, 224, 502
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	6 cut(s)	17, 63, 177, 222, 713, 829
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	201, 342, 488
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	2 cut(s)	286, 827
XhoI	CTCGAG	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	434, 644
ZrmI	AGTACT	2 cut(s)	633, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.