Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005090

Physical Location & Seq

Genomic Coordinates Forward (+)

23995785 .. 23997853

Gene Structure 2069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAAAGGAACCTCTCAATTCATAGTTTTCATCACCATCAGCATTTTTGGCTTATCAGCCATAGTGAATTCCCAAACAGATTCCTGCAGCTCAAGTCTAAACCTCCAGAATGTCAATCTGCCCTTTGATGCAGCTTCCCTCAACTGCCATGTAGTTTGGGATTCTCAGAGTTACATCCTCAGATACTCACAGACCACACCAGGAACATGGACCTTTGTTCTCTCAGCACCTGCAGCAAATTCCTACATAGCAATGGGGTTCTCAAGCAATGGCCAGATGACGGGGTCCAGTGCGATTGTGGGGTGGGTGTCCTCAACAGAGGGAGGAGTAATTAAGCGGTACTACTTAGGTGGGACTTCATCAAACCTTGTGGAGGTCGACAAAGGGAACCTAGTTCTTACCAACTTCTCCTTCATCACAAATCAGTCTTCCACGATATACATGGGGTTCCAGTTGGTGGCTGACCAACCACAAAATAGGCTCATATACTCAGTTGGCCCAACTGGGTTGCTTCCTGTAGCACCTAACTACAGGTTGACCGAGCACTTTGACAAGGTCTCCACCACCATAAATTACATCACAGGTCAAACATCGAGCACAGGAAGTCCATATACAAGATTAAGAAGGAGCCATGGAGCACTGACTATGCTTGGATGGGGCATTTTGATGATAATTGGAGTAATAGTTGCTCGTCACTTAAAGTCCTATGATCCACTTTGGTTTTACCTTCATATTGGCATCCAATCATTCGCATTTGTGTTTGGAATAATAGGTGTCATTTGTGGATTTGTCTTAGAAAATAAGACTAATGCTGATGTCTCCACCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTGGATGTCTTCAGGTGATGGCATTTTTGGCTCGACCAGATAAGGTATCGAAAGCACGAAAATACTGGAATTGGTACCATCAAACCGTGGGAAGGCTTCTGATTATTCTTGCAGTTGCAAATGTTTTCTACGGAATCCATTTGGGAGAAGAAGGAACGGGATGGAATGCTGGATATGGAGCTATTCTTGCTATCTTGGTTGTTATTGCTGTTATTCTCGAAGTAAAATTGTGGTTTATGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

367

Amino Acids

40.05

Weight (kDa)

9.07

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOMON	PF03351	61 - 135	3.1e-07	DOMON domain
Cytochrom_B561	PF03188	211 - 331	5.3e-08	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07570
fragaria_vesca	FvH4_2g17300
malus_domestica	MD05G1151900.v1.1 MD10G1146200.v1.1
prunus_persica	Prupe.1G238000_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1 Prupe.8G184600_v2.0.a1
pyrus_communis	pycom05g14640 pycom10g12600 pycom10g12610
rosa_chinensis	RchiOBHm_Chr6g0281811
rosa_laevigata	RLG00000012927
rosa_multiflora	Rmu_co8010262.1_g000001 Rmu_co8360785.1_g000001 Rmu_ssc0000126.1_g000040
rosa_roxburghii	Rroxscaffold_7G00186760
rosa_rugosa	Rorug06G0143700
rosa_samantha	Rh2AG280900 Rh3AG033700 Rh3BG033900 Rh3CG032600 Rh3DG033700 Rh6AG256800 Rh6BG260000 Rh6CG258900 Rh6DG251000 Rh7AG303800 Rh7CG322300
rosa_wichuraiana	Rw6G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
Acc65I	GGTACC	1 cut(s)	930
AccB1I	GGYRCC	1 cut(s)	930
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	67, 238
AcuI	CTGAAG	1 cut(s)	851
AfaI	GTAC	2 cut(s)	341, 932
AfiI	CCNNNNNNNGG	4 cut(s)	280, 373, 457, 948
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	4 cut(s)	90, 134, 833, 1037
AluI	AGCT	4 cut(s)	90, 134, 833, 1037
Alw21I	GWGCWC	3 cut(s)	546, 599, 640
Alw26I	GTCTC	2 cut(s)	562, 823
AlwI	GGATC	1 cut(s)	704
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	271, 496
ApeKI	GCWGC	3 cut(s)	87, 131, 233
ApoI	RAATTY	2 cut(s)	67, 238
Asp718I	GGTACC	1 cut(s)	930
AspS9I	GGNCC	3 cut(s)	210, 285, 497
AsuHPI	GGTGA	2 cut(s)	25, 883
AvaII	GGWCC	2 cut(s)	210, 285
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	930
BarI	GAAGNNNNNNTAC	2 cut(s)	595, 627
BbsI	GAAGAC	2 cut(s)	420, 857
Bbv12I	GWGCWC	3 cut(s)	546, 599, 640
BbvI	GCAGC	3 cut(s)	99, 143, 245
BccI	CCATC	5 cut(s)	44, 648, 868, 942, 1011
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	562, 823
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	4 cut(s)	85, 231, 516, 529
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	88, 132, 234
BlsI	GCNGC	3 cut(s)	89, 133, 235
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	2 cut(s)	210, 285
BmgT120I	GGNCC	3 cut(s)	210, 285, 497
BmiI	GGNNCC	6 cut(s)	10, 286, 389, 449, 629, 932
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	118, 747
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	420, 857
BpmI	CTGGAG	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	76, 247
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	2 cut(s)	631, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	542, 572, 669, 699
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 373, 457, 948
Bse1I	ACTGG	4 cut(s)	288, 451, 508, 926
Bse3DI	GCAATG	2 cut(s)	258, 274
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	631, 942
BseGI	GGATG	5 cut(s)	174, 659, 738, 866, 1022
BseLI	CCNNNNNNNGG	4 cut(s)	280, 373, 457, 948
BseMI	GCAATG	2 cut(s)	258, 274
BseMII	CTCAG	4 cut(s)	179, 193, 237, 504
BseNI	ACTGG	4 cut(s)	288, 451, 508, 926
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	99, 143, 245
BshFI	GGCC	2 cut(s)	273, 498
BshNI	GGYRCC	1 cut(s)	930
BsiHKAI	GWGCWC	3 cut(s)	546, 599, 640
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	280, 373, 457, 948
BsmAI	GTCTC	2 cut(s)	562, 823
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	1027
BsnI	GGCC	2 cut(s)	273, 498
Bso31I	GGTCTC	1 cut(s)	562
Bsp1286I	GDGCHC	3 cut(s)	546, 599, 640
Bsp143I	GATC	1 cut(s)	709
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	273, 498
BspCNI	CTCAG	4 cut(s)	178, 192, 236, 503
BspLI	GGNNCC	6 cut(s)	10, 286, 389, 449, 629, 932
BspMAI	CTGCAG	2 cut(s)	89, 235
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	704
BspT107I	GGYRCC	1 cut(s)	930
BspTNI	GGTCTC	1 cut(s)	562
BsrDI	GCAATG	2 cut(s)	258, 274
BsrI	ACTGG	4 cut(s)	288, 451, 508, 926
BssECI	CCNNGG	2 cut(s)	631, 942
BssMI	GATC	1 cut(s)	709
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	943
BstDEI	CTNAG	6 cut(s)	165, 179, 223, 346, 490, 793
BstDSI	CCRYGG	2 cut(s)	631, 942
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	5 cut(s)	174, 659, 738, 866, 1022
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	2 cut(s)	562, 823
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 233, 884, 1043
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	4 cut(s)	85, 231, 516, 529
BstV1I	GCAGC	3 cut(s)	99, 143, 245
BstV2I	GAAGAC	2 cut(s)	420, 857
BstXI	CCANNNNNNTGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	273, 498
BtgI	CCRYGG	2 cut(s)	631, 942
BtsCI	GGATG	5 cut(s)	174, 659, 738, 866, 1022
BtsIMutI	CAGTG	2 cut(s)	295, 638
BveI	ACCTGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	210, 285, 497
Csp6I	GTAC	2 cut(s)	340, 931
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	4 cut(s)	149, 207, 442, 632
CviQI	GTAC	2 cut(s)	340, 931
DdeI	CTNAG	6 cut(s)	165, 179, 223, 346, 490, 793
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
EaeI	YGGCCR	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	210, 285
Eco57I	CTGAAG	1 cut(s)	851
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	4 cut(s)	152, 210, 445, 635
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	4 cut(s)	148, 206, 441, 631
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	88, 132, 234
FokI	GGATG	5 cut(s)	161, 666, 725, 873, 1029
Fsp4HI	GCNGC	3 cut(s)	88, 132, 234
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	88, 132, 234
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	273, 498
Hin1II	CATG	4 cut(s)	152, 210, 445, 635
HincII	GTYRAC	2 cut(s)	379, 537
HindII	GTYRAC	2 cut(s)	379, 537
HinfI	GANTC	3 cut(s)	80, 161, 990
HphI	GGTGA	2 cut(s)	25, 883
Hpy166II	GTNNAC	2 cut(s)	379, 537
Hpy188I	TCNGA	3 cut(s)	168, 182, 957
Hpy188III	TCNNGA	2 cut(s)	106, 1073
Hpy8I	GTNNAC	2 cut(s)	379, 537
HpyAV	CCTTC	5 cut(s)	421, 618, 737, 942, 1001
HpyCH4III	ACNGT	1 cut(s)	943
HpyCH4V	TGCA	5 cut(s)	87, 131, 233, 968, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 233, 884, 1043
HpyF3I	CTNAG	6 cut(s)	165, 179, 223, 346, 490, 793
Hsp92II	CATG	4 cut(s)	152, 210, 445, 635
KpnI	GGTACC	1 cut(s)	934
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	3 cut(s)	627, 635, 1034
Lsp1109I	GCAGC	3 cut(s)	99, 143, 245
LweI	GCATC	2 cut(s)	118, 747
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	170, 692
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	4 cut(s)	420, 835, 857, 1016
MhlI	GDGCHC	3 cut(s)	546, 599, 640
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	8 cut(s)	17, 67, 238, 330, 571, 672, 925, 1082
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	8 cut(s)	22, 113, 149, 188, 313, 317, 322, 367
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	3 cut(s)	333, 620, 698
MslI	CAYNNNNRTG	3 cut(s)	251, 665, 851
Msp20I	TGGCCA	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	1027
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	48, 233, 884, 1043
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	4 cut(s)	152, 210, 445, 635
NlaIV	GGNNCC	6 cut(s)	10, 286, 389, 449, 629, 932
NmuCI	GTSAC	1 cut(s)	692
PaqCI	CACCTGC	1 cut(s)	238
PctI	GAATGC	1 cut(s)	1027
PfeI	GAWTC	3 cut(s)	80, 161, 990
PflFI	GACNNNGTC	2 cut(s)	283, 554
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	89, 133, 235
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	6 cut(s)	10, 286, 389, 449, 629, 932
PspPI	GGNCC	3 cut(s)	210, 285, 497
PstI	CTGCAG	2 cut(s)	89, 235
PstNI	CAGNNNCTG	1 cut(s)	230
PsyI	GACNNNGTC	2 cut(s)	283, 554
RsaI	GTAC	2 cut(s)	341, 932
RsaNI	GTAC	2 cut(s)	340, 931
RseI	CAYNNNNRTG	3 cut(s)	251, 665, 851
SalI	GTCGAC	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	333, 620, 698
SatI	GCNGC	3 cut(s)	88, 132, 234
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	3 cut(s)	210, 285, 497
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	3 cut(s)	546, 599, 640
SfaNI	GCATC	2 cut(s)	118, 747
SfcI	CTRYAG	4 cut(s)	85, 231, 516, 529
SinI	GGWCC	2 cut(s)	210, 285
SmiMI	CAYNNNNRTG	3 cut(s)	251, 665, 851
SmlI	CTYRAG	2 cut(s)	91, 262
SmoI	CTYRAG	2 cut(s)	91, 262
Sse9I	AATT	8 cut(s)	17, 67, 238, 330, 571, 672, 925, 1082
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	943
TaqI	TCGA	5 cut(s)	378, 593, 889, 905, 1074
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	8 cut(s)	17, 67, 238, 330, 571, 672, 925, 1082
TfiI	GAWTC	3 cut(s)	80, 161, 990
Tru1I	TTAA	3 cut(s)	333, 620, 698
Tru9I	TTAA	3 cut(s)	333, 620, 698
TscAI	CASTG	2 cut(s)	295, 645
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	3 cut(s)	87, 131, 233
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	7 cut(s)	10, 17, 19, 348, 403, 719, 835
TspGWI	ACGGA	1 cut(s)	1002
TspRI	CASTG	2 cut(s)	295, 645
Tth111I	GACNNNGTC	2 cut(s)	283, 554
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	210, 285
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	67, 238
XcmI	CCANNNNNNNNNTGG	3 cut(s)	295, 439, 833
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.