Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006974

Physical Location & Seq

Genomic Coordinates Forward (+)

15791323 .. 15791901

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTCTCTTTACTACTTAACAACAGACGTACCTTGAAGCTAGCCCAAGAAGAATTAGATCGAATAGTCGGCAGGCATAGATGGGTGGAAGACACTGACATCAAAAACCTGGTGTACCTCCAAGCCATTGCCAAAGAAACACTGCGTCTATACCCACCAGGTCCACTCTCGGTCCCGCATGAAGCAATGGAGGACTGCAAAGTCGGTGGCTTTCATGTTCCAAAGGGTACCCATCTGTATGTGAATCTCTGGAAGCTGCATAGAGACCCAAATGTGTGGCCAGATCCTGAAGTGTTTTCCCCGGAAAGATTTCTTACAACCCAAGCAAGTGTAGACGCTTTTGGTCAACATTTTGAGTTCATTCCTTTTGGGGCTGGGAGAAGAATTTGCCCAGGTATTACTCTTGCATTTCAGCTTATGCACTTGACCGTTGCGAGGTTGATACAAGGGTTTGAATTAGCAACACCATTAGACAAGGCAGTGGATATGACTGAAGGATCGGGACTGAGTATGGCAAGGGCAACTGCACTAGAAGTTGTCCTAACCGCACGCTTGGCCTATGAATTATATCTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

193

Amino Acids

21.72

Weight (kDa)

6.38

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 172	6.5e-57	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18410 FvH4_2g18410 FvH4_2g18411 FvH4_2g18420
malus_domestica	MD05G1169700.v1.1 MD05G1169800.v1.1 MD05G1169900.v1.1 MD05G1170000.v1.1 MD05G1170100.v1.1
prunus_persica	Prupe.8G197100_v2.0.a1 Prupe.8G197300_v2.0.a1
pyrus_communis	pycom05g15720 pycom05g15730
rosa_chinensis	RchiOBHm_Chr6g0283841 RchiOBHm_Chr6g0283881
rosa_laevigata	RLG00000012789 RLG00000012792
rosa_multiflora	Rmu_ssc0000442.1_g000004
rosa_roxburghii	Rroxscaffold_7G00185130 Rroxscaffold_7G00185140
rosa_rugosa	Rorug06G0158100
rosa_samantha	Rh6CG273300
rosa_wichuraiana	Rw6G023320 Rw6G023330 Rw6G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	2 cut(s)	176, 546
AclWI	GGATC	2 cut(s)	278, 505
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	2 cut(s)	309, 513
AfaI	GTAC	3 cut(s)	31, 116, 229
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	37, 455
AjnI	CCWGG	3 cut(s)	108, 157, 391
AluBI	AGCT	3 cut(s)	40, 256, 415
AluI	AGCT	3 cut(s)	40, 256, 415
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	278, 505
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	278, 555
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	161, 172
AsuC2I	CCSGG	1 cut(s)	302
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	161, 172
BaeI	ACNNNNGTAYC	4 cut(s)	13, 46, 434, 467
BalI	TGGCCA	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	2 cut(s)	75, 240
BciT130I	CCWGG	3 cut(s)	110, 159, 393
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	2 cut(s)	41, 530
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	4 cut(s)	110, 159, 302, 393
Bme18I	GGWCC	2 cut(s)	161, 172
BmgT120I	GGNCC	2 cut(s)	161, 172
BmiI	GGNNCC	2 cut(s)	174, 229
BmrFI	CCNGG	4 cut(s)	110, 159, 302, 393
BmtI	GCTAGC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	300, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	126, 192
BseBI	CCWGG	3 cut(s)	110, 159, 393
BseDI	CCNNGG	2 cut(s)	300, 391
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	2 cut(s)	126, 192
BseMII	CTCAG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	280, 557
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	2 cut(s)	158, 516
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	158, 516
BsnI	GGCC	2 cut(s)	280, 557
Bso31I	GGTCTC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	58, 283, 497
BspACI	CCGC	2 cut(s)	176, 546
BspANI	GGCC	2 cut(s)	280, 557
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	174, 229
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	278, 505
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	126, 192
BssECI	CCNNGG	2 cut(s)	300, 391
BssMI	GATC	3 cut(s)	58, 283, 497
Bst2UI	CCWGG	3 cut(s)	110, 159, 393
Bst4CI	ACNGT	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	42, 74, 550
BstDEI	CTNAG	1 cut(s)	506
BstKTI	GATC	3 cut(s)	61, 286, 500
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	3 cut(s)	58, 283, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	3 cut(s)	110, 159, 393
BstSCI	CCNGG	4 cut(s)	108, 157, 300, 391
BstV1I	GCAGC	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	280, 557
BtsI	GCAGTG	2 cut(s)	140, 486
BtsIMutI	CAGTG	3 cut(s)	93, 140, 486
Cac8I	GCNNGC	3 cut(s)	42, 74, 550
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	161, 172
CseI	GACGC	2 cut(s)	134, 344
CsiI	ACCWGGT	2 cut(s)	108, 157
Csp6I	GTAC	3 cut(s)	30, 115, 228
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	2 cut(s)	179, 215
CviJI	RGCY	9 cut(s)	40, 44, 125, 210, 256, 280, 374, 415, 557
CviKI_1	RGCY	9 cut(s)	40, 44, 125, 210, 256, 280, 374, 415, 557
CviQI	GTAC	3 cut(s)	30, 115, 228
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	3 cut(s)	60, 285, 499
DpnII	GATC	3 cut(s)	58, 283, 497
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	161, 172
Eco57I	CTGAAG	2 cut(s)	309, 513
EcoRII	CCWGG	3 cut(s)	108, 157, 391
FaeI	CATG	2 cut(s)	182, 218
FaqI	GGGAC	2 cut(s)	158, 516
FatI	CATG	2 cut(s)	178, 214
FauI	CCCGC	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	2 cut(s)	41, 530
GluI	GCNGC	1 cut(s)	257
GsaI	CCCAGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	280, 557
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	2 cut(s)	134, 344
Hin1II	CATG	2 cut(s)	182, 218
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	4 cut(s)	115, 164, 334, 347
Hpy188III	TCNNGA	3 cut(s)	250, 287, 501
Hpy8I	GTNNAC	4 cut(s)	115, 164, 334, 347
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	198, 259, 407, 421, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	182, 218
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	58, 283, 497
Lsp1109I	GCAGC	1 cut(s)	243
MabI	ACCWGGT	2 cut(s)	108, 157
MaeI	CTAG	2 cut(s)	41, 530
MaeII	ACGT	1 cut(s)	28
MalI	GATC	3 cut(s)	60, 285, 499
MboI	GATC	3 cut(s)	58, 283, 497
MboII	GAAGA	3 cut(s)	62, 101, 393
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	4 cut(s)	53, 384, 455, 563
MluNI	TGGCCA	1 cut(s)	280
MnlI	CCTC	3 cut(s)	128, 184, 429
Mox20I	TGGCCA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	280
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	4 cut(s)	110, 159, 302, 393
MvaI	CCWGG	3 cut(s)	110, 159, 393
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	58, 283, 497
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	182, 218
NlaIV	GGNNCC	2 cut(s)	174, 229
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	258
Psp6I	CCWGG	3 cut(s)	108, 157, 391
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	3 cut(s)	108, 157, 391
PspN4I	GGNNCC	2 cut(s)	174, 229
PspPI	GGNCC	2 cut(s)	161, 172
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	3 cut(s)	31, 116, 229
RsaNI	GTAC	3 cut(s)	30, 115, 228
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	58, 283, 497
Sau96I	GGNCC	2 cut(s)	161, 172
ScrFI	CCNGG	4 cut(s)	110, 159, 302, 393
SexAI	ACCWGGT	2 cut(s)	108, 157
SinI	GGWCC	2 cut(s)	161, 172
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	4 cut(s)	53, 384, 455, 563
SsiI	CCGC	2 cut(s)	176, 546
SspMI	CTAG	2 cut(s)	41, 530
StyD4I	CCNGG	4 cut(s)	108, 157, 300, 391
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	61
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	4 cut(s)	53, 384, 455, 563
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	3 cut(s)	100, 147, 486
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	195, 203, 349, 576
TspRI	CASTG	3 cut(s)	100, 147, 486
VpaK11BI	GGWCC	2 cut(s)	161, 172
XapI	RAATTY	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	41, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.