Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006974

Physical Location & Seq

Genomic Coordinates Reverse (-)

29951254 .. 29951757

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1169700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGCAGAATCTAATCTTAGCTGGAACGGAAGCCACATCAACCACATTGACATGGATCCTGTGTTTGTTACTAAACAACAGGGATGTTTTAAAGCTCGCCAAAGAAGAGCTAGACTTACAAGTTTGCAGGGAGAGATGGGTTAAAGACACTGATATCAAAAGCCTAATTTACCTCCAAGCTATTGTTAAGGAAACTCTGCGCCTATATCGACCAGCCCCACTCTCAGTTCAACATGAGGCAATGGAAGACTGCCAAGTTTCTGACTTTCACATTCCCAAGGGCACACGCTTATTTGTGAACTTGTGGAAATTGTACAGGGACCCAACTGTGTGGTTAGACCCTAAAGTATTTTCCACATATAGGTTTCTTACAACCCAAGCGAGCATTGATGCCTCTGGTCAGCATTTTGAGTTCATTACATTTGGGTCTGGAAGAAGATCTTGTCCAGGTCTCACATTCGCAATGCAAGTTATCCACTTGACATTTGGTACATTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

168

Amino Acids

19.18

Weight (kDa)

7.7

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 167	4.9e-52	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18410 FvH4_2g18410 FvH4_2g18411 FvH4_2g18420
malus_domestica	MD05G1169700.v1.1 MD05G1169800.v1.1 MD05G1169900.v1.1 MD05G1170000.v1.1 MD05G1170100.v1.1
prunus_persica	Prupe.8G197100_v2.0.a1 Prupe.8G197300_v2.0.a1
pyrus_communis	pycom05g15720 pycom05g15730
rosa_chinensis	RchiOBHm_Chr6g0283841 RchiOBHm_Chr6g0283881
rosa_laevigata	RLG00000012789 RLG00000012792
rosa_multiflora	Rmu_ssc0000442.1_g000004
rosa_roxburghii	Rroxscaffold_7G00185130 Rroxscaffold_7G00185140
rosa_rugosa	Rorug06G0158100
rosa_samantha	Rh6CG273300
rosa_wichuraiana	Rw6G023320 Rw6G023330 Rw6G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	52, 65
AfaI	GTAC	2 cut(s)	317, 493
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	4 cut(s)	23, 97, 112, 182
AluI	AGCT	4 cut(s)	23, 97, 112, 182
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	52, 65
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	255
BccI	CCATC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	59, 323, 324
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse3DI	GCAATG	2 cut(s)	249, 471
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	2 cut(s)	249, 471
BseMII	CTCAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	57, 440
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	3 cut(s)	59, 323, 324
BspPI	GGATC	2 cut(s)	52, 65
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	249, 471
BsrGI	TGTACA	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	57, 440
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	99, 385
BstDEI	CTNAG	2 cut(s)	19, 226
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	60, 443
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	57, 440
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	57, 440
BstXI	CCANNNNNNTGG	1 cut(s)	333
BstYI	RGATCY	2 cut(s)	57, 440
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	99, 385
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	316, 492
CviAII	CATG	2 cut(s)	54, 236
CviJI	RGCY	7 cut(s)	23, 35, 97, 112, 165, 182, 218
CviKI_1	RGCY	7 cut(s)	23, 35, 97, 112, 165, 182, 218
CviQI	GTAC	2 cut(s)	316, 492
DdeI	CTNAG	2 cut(s)	19, 226
DpnI	GATC	2 cut(s)	59, 442
DpnII	GATC	2 cut(s)	57, 440
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	57, 239
FaiI	YATR	5 cut(s)	55, 208, 237, 361, 363
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	2 cut(s)	53, 235
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	57, 239
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	129, 469
HpyF3I	CTNAG	2 cut(s)	19, 226
Hsp92II	CATG	2 cut(s)	57, 239
HspAI	GCGC	1 cut(s)	202
KflI	GGGWCCC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	57, 440
LguI	GCTCTTC	1 cut(s)	102
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	2 cut(s)	59, 442
MboI	GATC	2 cut(s)	57, 440
MboII	GAAGA	4 cut(s)	119, 260, 447, 450
MflI	RGATCY	2 cut(s)	57, 440
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	168, 311
MnlI	CCTC	3 cut(s)	185, 232, 406
MseI	TTAA	4 cut(s)	92, 144, 189, 502
MslI	CAYNNNNRTG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	57, 440
NlaIII	CATG	2 cut(s)	57, 239
NlaIV	GGNNCC	3 cut(s)	59, 323, 324
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	59, 323, 324
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	57, 440
RsaI	GTAC	2 cut(s)	317, 493
RsaNI	GTAC	2 cut(s)	316, 492
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	92, 144, 189, 502
Sau3AI	GATC	2 cut(s)	57, 440
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	25, 99, 114, 177, 184, 368, 454
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	168, 311
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	168, 311
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	4 cut(s)	92, 144, 189, 502
Tru9I	TTAA	4 cut(s)	92, 144, 189, 502
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.