MD05G1170000.v1.1

Cytochrome p450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
29970179 .. 29972569
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1170000.v1.1.491

Sequence Viewer

Length: 1575 bp
ATGGATTTTCCTTCTCATCTTCTAGCAATTGTAGGGATTTTACTCTTTGTTCTGTATCTATGGAGGGTAAAAATCCAAAGTCACAAAACCAAGGGCATGCTAGCCCCACAACCATCAGGTGCCCTTCCAATCATAGGACACCTCCACAAACTTGGAGGCAAAAACCCACTTTGCAGAACCCTAGCATCCATGGCTGACAAGTACGGTCCAATCTTCACCATACAGCTTGGCAAGCACCCTGCACTTGTGATCAGCAACTATGATGCAGTCAAGGAATGCTTCACCAAAAACGACATTGCTTTCGCAACGAGATCAAAGTCGGCACAAGGAAGGTACCTTGGTTACAATTATGCAGCTTTAGGGTTCTCACAATACGGCACGTATTGGCGTAACATGAGAAAAATGGCCATCGTTGAGTTGCTCTCTAGCCGCAGGCTTCAGACACTAAAACATGTCCAAATCTCTGAGGTTGATTCTTTTATCAAAGGGTTGTACGAAATTTGCAAAACAAAAGGGGAAAATGGTCAAAGCAAGGTGGTGATTAGCGAGTGGATTGAGCACCTGACTTTGAATGTAATTACTCAAATGATTGCTGGGAAGAGATATTTTGATTGGGGTAAAGTGGGAAATGACTCAGATAATGAGGGAGAAAATAAGAGGATTCGGGAAATGGTGAAGGAGTTTATGTGTGTGGCTGGGAAACCAGTTGTTTCTGATGTAATTGGGTTTCCGGATTGGATTGATCTAATGGGGCAAGTGAAGAATATGAAGCGTATCGGGAAGGATTTTGATTCTCTAATGGCAAGTTGGATTGAAGAACATAAGAATGCAAGGGAGGAAATTGACTCAAGGGACAAGCTTGACTTCATTGATGTCATGCTTTCTGTGATTGAGGACAATACTGTGCTTGGTCATAGTCGTGAAACTATCATCAAGGCAACATCGCAGAATCTGATCTTAGCAGGCTCAGACACCACAGCGACCAGCTTGACGTGGATCCTCTCTTTATTATTAAACAATAGGCATATTTTGAAGCATGCACAAGAAGAGATAAACCTACAAGTTGGCACAGAGAGATGGGTTGAAGACACTGATATCAAAGACCTAACTTACCTCCAAGCCATTGTCAAGGAAACCTTACGTCTATACCCTCCAGCCCCACTCTCAGTCCCACATGAAGCAATGGAAGATTGCCAAGTTTGTGGCTTTCACATTCCAAAGGGCACACGTTTATTTGCGAATTTGTGGAAATTGCATAGAGACCCATCTGTGTGGTCAGACCCTGAAGTGTTTTGCCCAGATAGGTTTCTTACAACCCAAGCAAGCACTGATGTCTCTGGTCAACATTTTGAGTTCATTCCATTTGGATCTGGAAGAAGATCTTGTCCAGGTCTCACATTCGCAATGCAAGTTATCCACTTGACTCTTGGTAGATTGATTCAAGGGTTTGAATTGGCCACTCCATTGGACATGCCTGTGGACATGGCTGAAGGACTAGGTATTACTATGCCAAAGGCAACTTCACTTGAAGTCGTGCTAACTCCACGCTTGCCCAGTCAATTCTATGAAAGATAG

Protein Analysis

525

Amino Acids

59.13

Weight (kDa)

7.26

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 505 3.9e-98 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 333
AccB1I GGYRCC 2 cut(s) 119, 333
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 1 cut(s) 430
AclWI GGATC 3 cut(s) 991, 1004, 1375
AcoI YGGCCR 2 cut(s) 405, 1455
AcsI RAATTY 2 cut(s) 498, 1240
AcuI CTGAAG 3 cut(s) 422, 1305, 1509
AfaI GTAC 3 cut(s) 203, 335, 494
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 2 cut(s) 451, 1226
AgsI TTSAA 7 cut(s) 571, 815, 1033, 1085, 1442, 1451, 1529
AjiI CACGTC 1 cut(s) 993
AjnI CCWGG 1 cut(s) 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1504, 1536
AluBI AGCT 4 cut(s) 226, 356, 859, 987
AluI AGCT 4 cut(s) 226, 356, 859, 987
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 3 cut(s) 1254, 1339, 1397
AlwI GGATC 3 cut(s) 991, 1004, 1375
AlwNI CAGNNNCTG 2 cut(s) 952, 1283
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 2 cut(s) 405, 1455
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 498, 1240
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp718I GGTACC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 4 cut(s) 208, 274, 550, 685
AsuNHI GCTAGC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 206
BaeGI GKGCMC 2 cut(s) 124, 1226
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BalI TGGCCA 2 cut(s) 407, 1457
BamHI GGATCC 1 cut(s) 996
BanI GGYRCC 2 cut(s) 119, 333
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 365
BccI CCATC 4 cut(s) 121, 416, 1071, 1273
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 1389
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 3 cut(s) 1254, 1339, 1397
BfaI CTAG 5 cut(s) 23, 101, 182, 426, 1496
BglII AGATCT 1 cut(s) 1379
BisI GCNGC 2 cut(s) 354, 430
BlsI GCNGC 2 cut(s) 355, 431
Bme1390I CCNGG 1 cut(s) 1389
Bme18I GGWCC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 993
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 3 cut(s) 121, 335, 998
BmrFI CCNGG 1 cut(s) 1389
BmrI ACTGGG 1 cut(s) 1548
BmsI GCATC 2 cut(s) 194, 253
BmtI GCTAGC 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 1548
BpiI GAAGAC 1 cut(s) 1092
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 832
BsaAI YACGTR 1 cut(s) 381
BsaI GGTCTC 2 cut(s) 1254, 1397
BsaJI CCNNGG 3 cut(s) 90, 189, 337
BsaWI WCCGGW 1 cut(s) 730
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 704, 1554
Bse3DI GCAATG 3 cut(s) 294, 1188, 1410
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 1 cut(s) 1389
BseDI CCNNGG 3 cut(s) 90, 189, 337
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 3 cut(s) 294, 1188, 1410
BseMII CTCAG 4 cut(s) 456, 648, 981, 1179
BseNI ACTGG 2 cut(s) 704, 1554
BseSI GKGCMC 2 cut(s) 124, 1226
BseXI GCAGC 1 cut(s) 365
BseYI CCCAGC 2 cut(s) 593, 695
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 407, 1457
BshNI GGYRCC 2 cut(s) 119, 333
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 1 cut(s) 731
BslFI GGGAC 2 cut(s) 866, 1154
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 3 cut(s) 1254, 1339, 1397
BsmFI GGGAC 2 cut(s) 866, 1154
BsmI GAATGC 2 cut(s) 281, 832
BsnI GGCC 2 cut(s) 407, 1457
Bso31I GGTCTC 2 cut(s) 1254, 1397
Bsp1286I GDGCHC 3 cut(s) 124, 561, 1226
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 1 cut(s) 430
BspANI GGCC 2 cut(s) 407, 1457
BspCNI CTCAG 4 cut(s) 457, 647, 980, 1178
BspEI TCCGGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 121, 335, 998
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 3 cut(s) 991, 1004, 1375
BspT107I GGYRCC 2 cut(s) 119, 333
BspTNI GGTCTC 2 cut(s) 1254, 1397
BsrDI GCAATG 3 cut(s) 294, 1188, 1410
BsrI ACTGG 2 cut(s) 704, 1554
BssECI CCNNGG 3 cut(s) 90, 189, 337
BssMI GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
BssT1I CCWWGG 3 cut(s) 90, 189, 337
Bst2UI CCWGG 1 cut(s) 1389
Bst4CI ACNGT 2 cut(s) 206, 904
Bst6I CTCTTC 2 cut(s) 593, 1041
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 8 cut(s) 98, 102, 233, 434, 964, 1038, 1324, 1550
BstDEI CTNAG 5 cut(s) 465, 634, 958, 967, 1165
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 7 cut(s) 252, 314, 745, 957, 999, 1370, 1382
BstMAI GTCTC 3 cut(s) 1254, 1339, 1397
BstMBI GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
BstMWI GCNNNNNNNGC 2 cut(s) 191, 232
BstNI CCWGG 1 cut(s) 1389
BstNSI RCATGY 4 cut(s) 100, 455, 1040, 1474
BstSCI CCNGG 1 cut(s) 1387
BstSLI GKGCMC 2 cut(s) 124, 1226
BstV1I GCAGC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 3 cut(s) 996, 1367, 1379
BstXI CCANNNNNNTGG 4 cut(s) 152, 1202, 1272, 1465
BstYI RGATCY 3 cut(s) 996, 1367, 1379
BsuRI GGCC 2 cut(s) 407, 1457
BtgI CCRYGG 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 927
BtrI CACGTC 1 cut(s) 993
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 1089, 1326
Cac8I GCNNGC 8 cut(s) 98, 102, 233, 434, 964, 1038, 1324, 1550
CaiI CAGNNNCTG 2 cut(s) 952, 1283
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 202, 334, 493
CviAII CATG 9 cut(s) 97, 190, 394, 452, 877, 1037, 1175, 1471, 1483
CviQI GTAC 3 cut(s) 202, 334, 493
DdeI CTNAG 5 cut(s) 465, 634, 958, 967, 1165
DpnI GATC 7 cut(s) 251, 313, 744, 956, 998, 1369, 1381
DpnII GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
EaeI YGGCCR 2 cut(s) 405, 1455
Eam1104I CTCTTC 2 cut(s) 593, 1041
EarI CTCTTC 2 cut(s) 593, 1041
Eco130I CCWWGG 3 cut(s) 90, 189, 337
Eco31I GGTCTC 2 cut(s) 1254, 1397
Eco32I GATATC 1 cut(s) 1096
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 3 cut(s) 422, 1305, 1509
EcoRII CCWGG 1 cut(s) 1387
EcoRV GATATC 1 cut(s) 1096
EcoT14I CCWWGG 3 cut(s) 90, 189, 337
ErhI CCWWGG 3 cut(s) 90, 189, 337
FaeI CATG 9 cut(s) 100, 193, 397, 455, 880, 1040, 1178, 1474, 1486
FalI AAGNNNNNCTT 8 cut(s) 263, 295, 848, 880, 1121, 1153, 1366, 1398
FaqI GGGAC 2 cut(s) 866, 1154
FatI CATG 9 cut(s) 96, 189, 393, 451, 876, 1036, 1174, 1470, 1482
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 354, 430
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 354, 430
FspBI CTAG 5 cut(s) 23, 101, 182, 426, 1496
GluI GCNGC 2 cut(s) 354, 430
GsaI CCCAGC 2 cut(s) 597, 699
GsuI CTGGAG 1 cut(s) 1137
HaeIII GGCC 2 cut(s) 407, 1457
HapII CCGG 1 cut(s) 731
Hin1II CATG 9 cut(s) 100, 193, 397, 455, 880, 1040, 1178, 1474, 1486
HincII GTYRAC 1 cut(s) 1343
HindII GTYRAC 1 cut(s) 1343
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 8 cut(s) 473, 632, 661, 791, 845, 949, 1423, 1438
HpaII CCGG 1 cut(s) 731
HphI GGTGA 4 cut(s) 208, 274, 550, 685
Hpy166II GTNNAC 2 cut(s) 1343, 1480
Hpy188I TCNGA 7 cut(s) 441, 466, 637, 715, 954, 970, 1279
Hpy188III TCNNGA 5 cut(s) 665, 731, 778, 920, 1371
Hpy8I GTNNAC 2 cut(s) 1343, 1480
HpyAV CCTTC 6 cut(s) 21, 134, 324, 670, 775, 1484
HpyCH4III ACNGT 2 cut(s) 206, 904
HpyCH4IV ACGT 4 cut(s) 380, 992, 1141, 1228
HpyCH4V TGCA 9 cut(s) 174, 242, 266, 353, 504, 830, 1040, 1255, 1408
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 232
HpyF3I CTNAG 5 cut(s) 465, 634, 958, 967, 1165
HpySE526I ACGT 4 cut(s) 380, 992, 1141, 1228
Hsp92II CATG 9 cut(s) 100, 193, 397, 455, 880, 1040, 1178, 1474, 1486
Kpn2I TCCGGA 1 cut(s) 730
KpnI GGTACC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 2 cut(s) 194, 253
MaeI CTAG 5 cut(s) 23, 101, 182, 426, 1496
MaeII ACGT 4 cut(s) 380, 992, 1141, 1228
MaeIII GTNAC 3 cut(s) 80, 341, 389
MalI GATC 7 cut(s) 251, 313, 744, 956, 998, 1369, 1381
MboI GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 3 cut(s) 996, 1367, 1379
MhlI GDGCHC 3 cut(s) 124, 561, 1226
MlsI TGGCCA 2 cut(s) 407, 1457
MluNI TGGCCA 2 cut(s) 407, 1457
MlyI GAGTC 3 cut(s) 626, 839, 1417
MmeI TCCRAC 1 cut(s) 788
Mox20I TGGCCA 2 cut(s) 407, 1457
MroI TCCGGA 1 cut(s) 730
MscI TGGCCA 2 cut(s) 407, 1457
MseI TTAA 1 cut(s) 1013
MslI CAYNNNNRTG 4 cut(s) 825, 918, 1270, 1475
Msp20I TGGCCA 2 cut(s) 407, 1457
MspI CCGG 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 1389
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 281, 832
MvaI CCWGG 1 cut(s) 1389
MwoI GCNNNNNNNGC 2 cut(s) 191, 232
NcoI CCATGG 1 cut(s) 189
NdeII GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 9 cut(s) 100, 193, 397, 455, 880, 1040, 1178, 1474, 1486
NlaIV GGNNCC 3 cut(s) 121, 335, 998
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 4 cut(s) 100, 455, 1040, 1474
PaeI GCATGC 2 cut(s) 100, 1040
PciI ACATGT 1 cut(s) 451
PctI GAATGC 2 cut(s) 281, 832
PfeI GAWTC 5 cut(s) 473, 661, 791, 949, 1438
PkrI GCNGC 2 cut(s) 355, 431
PleI GAGTC 3 cut(s) 626, 839, 1417
PpsI GAGTC 3 cut(s) 626, 839, 1417
Ppu21I YACGTR 1 cut(s) 381
PscI ACATGT 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 1387
PspFI CCCAGC 2 cut(s) 593, 695
PspGI CCWGG 1 cut(s) 1387
PspN4I GGNNCC 3 cut(s) 121, 335, 998
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 2 cut(s) 952, 1283
PsuI RGATCY 3 cut(s) 996, 1367, 1379
RsaI GTAC 3 cut(s) 203, 335, 494
RsaNI GTAC 3 cut(s) 202, 334, 493
RseI CAYNNNNRTG 4 cut(s) 825, 918, 1270, 1475
SaqAI TTAA 1 cut(s) 1013
SatI GCNGC 2 cut(s) 354, 430
Sau3AI GATC 7 cut(s) 249, 311, 742, 954, 996, 1367, 1379
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 3 cut(s) 626, 839, 1417
ScrFI CCNGG 1 cut(s) 1389
SduI GDGCHC 3 cut(s) 124, 561, 1226
SfaNI GCATC 2 cut(s) 194, 253
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 4 cut(s) 825, 918, 1270, 1475
SmlI CTYRAG 1 cut(s) 847
SmoI CTYRAG 1 cut(s) 847
SphI GCATGC 2 cut(s) 100, 1040
SsiI CCGC 1 cut(s) 430
SspMI CTAG 5 cut(s) 23, 101, 182, 426, 1496
StyD4I CCNGG 1 cut(s) 1387
StyI CCWWGG 3 cut(s) 90, 189, 337
TaaI ACNGT 2 cut(s) 206, 904
TaiI ACGT 4 cut(s) 383, 995, 1144, 1231
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 5 cut(s) 473, 661, 791, 949, 1438
Tru1I TTAA 1 cut(s) 1013
Tru9I TTAA 1 cut(s) 1013
TscAI CASTG 2 cut(s) 1096, 1333
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 782, 856, 1191, 1345
TspRI CASTG 2 cut(s) 1096, 1333
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 2 cut(s) 498, 1240
XceI RCATGY 4 cut(s) 100, 455, 1040, 1474
XcmI CCANNNNNNNNNTGG 1 cut(s) 1424
XspI CTAG 5 cut(s) 23, 101, 182, 426, 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.