Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006974

Physical Location & Seq

Genomic Coordinates Forward (+)

22610988 .. 22615512

Gene Structure 4525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0158100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCTGAATCACAAGGAGACGAACACGATTCCACAAGCTTCAGGGCTTCATCCGTCTCAGTATATTCCAGTGAAGAATATGAAGGCAGGCTAAACAATATTCCAACAGATTTTCAATTTATCCAAATTCAGGGTTTTGGGATGAAAATCAGTAAAACAGAGGTGAACTTGAGGAGGCTGCTTGCAGCTGCTCCTCAGCAACAAAACCAGGCAAAACTTTCGCATTATGTTGCTACTTTACGAGAACAGGTAGAACAGCTAGCTGAAGAGAGAACACCGGAAGGCTTACCTAGAGTTTCAAAGGCTGTCTTAAGTGACTATTCAGAGAAGATCGAAGCCATTGCTTCGAAATTAGCTGCTCCATTGCCTGATTTGCAAGAACCACAGGAGTCCCTTGCAAGAATTTCGGTTAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGAGTCCCCATTCTCCAGGTCTGAGAAGAAGATTTGTGCCCAACTCAAACATCCAAGATGGAACTCGTGAGACTCCTAGTGCAGATTCTTTGTCACCTGTCAAACTTGACGCTGCAGCTCAAGCGCACATTGAAAAGCATAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGGTTGGCAAGGCAACTCAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAGAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTAGAAAGGAGCTTGGCTAGCACTGGTCATGCCACTGCACGGGCATCCGATATATACTCAAAGACCTCCAAGACTTCATGTTTCACATGGCTTTTGATGTTTCTAATGACGTGTATATTCATTATGGTGGTACTTTTAATTCGTGTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

286

Amino Acids

31.78

Weight (kDa)

5.72

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Use1	PF09753	52 - 286	1.6e-69	Membrane fusion protein Use1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18410 FvH4_2g18410 FvH4_2g18411 FvH4_2g18420
malus_domestica	MD05G1169700.v1.1 MD05G1169800.v1.1 MD05G1169900.v1.1 MD05G1170000.v1.1 MD05G1170100.v1.1
prunus_persica	Prupe.8G197100_v2.0.a1 Prupe.8G197300_v2.0.a1
pyrus_communis	pycom05g15720 pycom05g15730
rosa_chinensis	RchiOBHm_Chr6g0283841 RchiOBHm_Chr6g0283881
rosa_laevigata	RLG00000012789 RLG00000012792
rosa_multiflora	Rmu_ssc0000442.1_g000004
rosa_roxburghii	Rroxscaffold_7G00185130 Rroxscaffold_7G00185140
rosa_rugosa	Rorug06G0158100
rosa_samantha	Rh6CG273300
rosa_wichuraiana	Rw6G023320 Rw6G023330 Rw6G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	126, 402
AcuI	CTGAAG	3 cut(s)	25, 285, 575
AdeI	CACNNNGTG	1 cut(s)	667
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	2 cut(s)	130, 747
AflII	CTTAAG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	116, 300, 575
AhlI	ACTAGT	1 cut(s)	644
AjiI	CACGTC	1 cut(s)	819
AjnI	CCWGG	2 cut(s)	207, 457
AluBI	AGCT	7 cut(s)	39, 188, 259, 263, 356, 560, 720
AluI	AGCT	7 cut(s)	39, 188, 259, 263, 356, 560, 720
Alw26I	GTCTC	6 cut(s)	12, 61, 429, 506, 635, 653
ApeKI	GCWGC	6 cut(s)	178, 185, 188, 356, 554, 557
ApoI	RAATTY	2 cut(s)	126, 402
AspLEI	GCGC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	175, 528
AsuII	TTCGAA	1 cut(s)	347
AsuNHI	GCTAGC	2 cut(s)	259, 725
BaeGI	GKGCMC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	414, 592
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	6 cut(s)	165, 175, 197, 343, 541, 569
BccI	CCATC	1 cut(s)	494
BcgI	CGANNNNNNTGC	6 cut(s)	201, 235, 323, 357, 387, 421
BciT130I	CCWGG	2 cut(s)	209, 459
BcoDI	GTCTC	6 cut(s)	12, 61, 429, 506, 635, 653
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	5 cut(s)	260, 291, 519, 645, 726
BfmI	CTRYAG	3 cut(s)	555, 696, 708
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	6 cut(s)	179, 186, 189, 357, 555, 558
BlsI	GCNGC	6 cut(s)	180, 187, 190, 358, 556, 559
Bme1390I	CCNGG	2 cut(s)	209, 459
BmgBI	CACGTC	1 cut(s)	819
BmrFI	CCNGG	2 cut(s)	209, 459
BmsI	GCATC	1 cut(s)	761
BmtI	GCTAGC	2 cut(s)	263, 729
BpiI	GAAGAC	2 cut(s)	414, 592
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	190, 546
BsaBI	GATNNNNATC	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 747
Bse1I	ACTGG	2 cut(s)	69, 736
Bse3DI	GCAATG	2 cut(s)	339, 362
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	209, 459
BseGI	GGATG	4 cut(s)	50, 147, 492, 752
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	130, 747
BseMI	GCAATG	2 cut(s)	339, 362
BseMII	CTCAG	3 cut(s)	72, 209, 455
BseNI	ACTGG	2 cut(s)	69, 736
BseRI	GAGGAG	3 cut(s)	183, 187, 716
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	6 cut(s)	165, 175, 197, 343, 541, 569
BsgI	GTGCAG	3 cut(s)	543, 689, 729
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	376, 432
BslI	CCNNNNNNNGG	2 cut(s)	130, 747
BsmAI	GTCTC	6 cut(s)	12, 61, 429, 506, 635, 653
BsmBI	CGTCTC	2 cut(s)	12, 61
BsmFI	GGGAC	2 cut(s)	376, 432
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	1 cut(s)	330
BspCNI	CTCAG	3 cut(s)	71, 208, 456
BspHI	TCATGA	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	559
BspOI	GCTAGC	2 cut(s)	263, 729
BspT104I	TTCGAA	1 cut(s)	347
BspTI	CTTAAG	1 cut(s)	310
BsrDI	GCAATG	2 cut(s)	339, 362
BsrI	ACTGG	2 cut(s)	69, 736
BssMI	GATC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	209, 459
Bst6I	CTCTTC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	4 cut(s)	89, 183, 261, 727
BstDEI	CTNAG	4 cut(s)	58, 195, 464, 858
BstF5I	GGATG	4 cut(s)	50, 147, 492, 752
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	6 cut(s)	12, 61, 429, 506, 635, 653
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	3 cut(s)	373, 563, 726
BstNI	CCWGG	2 cut(s)	209, 459
BstSCI	CCNGG	2 cut(s)	207, 457
BstSFI	CTRYAG	3 cut(s)	555, 696, 708
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	6 cut(s)	165, 175, 197, 343, 541, 569
BstV2I	GAAGAC	2 cut(s)	414, 592
BtrI	CACGTC	1 cut(s)	819
BtsCI	GGATG	4 cut(s)	50, 147, 492, 752
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	4 cut(s)	76, 675, 729, 741
Cac8I	GCNNGC	4 cut(s)	89, 183, 261, 727
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	568
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	4 cut(s)	652, 737, 786, 795
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	4 cut(s)	58, 195, 464, 858
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraIII	CACNNNGTG	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	25, 285, 575
EcoRII	CCWGG	2 cut(s)	207, 457
Esp3I	CGTCTC	2 cut(s)	12, 61
FaeI	CATG	4 cut(s)	655, 740, 789, 798
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	376, 432
FatI	CATG	4 cut(s)	651, 736, 785, 794
Fnu4HI	GCNGC	6 cut(s)	179, 186, 189, 357, 555, 558
FokI	GGATG	4 cut(s)	37, 154, 479, 739
Fsp4HI	GCNGC	6 cut(s)	179, 186, 189, 357, 555, 558
FspBI	CTAG	5 cut(s)	260, 291, 519, 645, 726
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	6 cut(s)	179, 186, 189, 357, 555, 558
GsuI	CTGGAG	1 cut(s)	441
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	4 cut(s)	655, 740, 789, 798
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	7 cut(s)	8, 29, 389, 445, 514, 527, 692
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	175, 528
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	6 cut(s)	7, 325, 427, 444, 465, 757
Hpy188III	TCNNGA	3 cut(s)	509, 593, 652
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	77, 275
HpyCH4IV	ACGT	1 cut(s)	818
HpyCH4V	TGCA	7 cut(s)	185, 376, 398, 524, 557, 670, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	373, 563, 726
HpyF3I	CTNAG	4 cut(s)	58, 195, 464, 858
HpySE526I	ACGT	1 cut(s)	818
Hsp92II	CATG	4 cut(s)	655, 740, 789, 798
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	196, 364, 717
Lsp1109I	GCAGC	6 cut(s)	165, 175, 197, 343, 541, 569
LweI	GCATC	1 cut(s)	761
MaeI	CTAG	5 cut(s)	260, 291, 519, 645, 726
MaeII	ACGT	1 cut(s)	818
MaeIII	GTNAC	3 cut(s)	314, 534, 853
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	7 cut(s)	86, 278, 340, 414, 480, 483, 597
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	5 cut(s)	116, 126, 350, 402, 846
MlyI	GAGTC	4 cut(s)	398, 454, 508, 686
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	154, 165, 168, 204, 589, 694, 697, 784
MseI	TTAA	3 cut(s)	311, 411, 845
MslI	CAYNNNNRTG	1 cut(s)	833
MspA1I	CMGCKG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	209, 459
MvaI	CCWGG	2 cut(s)	209, 459
MwoI	GCNNNNNNNGC	3 cut(s)	373, 563, 726
NdeII	GATC	1 cut(s)	330
NheI	GCTAGC	2 cut(s)	259, 725
NlaIII	CATG	4 cut(s)	655, 740, 789, 798
NmuCI	GTSAC	3 cut(s)	314, 534, 853
NspV	TTCGAA	1 cut(s)	347
PagI	TCATGA	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	8, 29, 527
PkrI	GCNGC	6 cut(s)	180, 187, 190, 358, 556, 559
PleI	GAGTC	4 cut(s)	397, 453, 508, 686
PpsI	GAGTC	4 cut(s)	397, 453, 508, 686
Psp6I	CCWGG	2 cut(s)	207, 457
PspGI	CCWGG	2 cut(s)	207, 457
PstI	CTGCAG	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
RseI	CAYNNNNRTG	1 cut(s)	833
SaqAI	TTAA	3 cut(s)	311, 411, 845
SatI	GCNGC	6 cut(s)	179, 186, 189, 357, 555, 558
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	4 cut(s)	398, 454, 508, 686
ScrFI	CCNGG	2 cut(s)	209, 459
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	3 cut(s)	555, 696, 708
SfuI	TTCGAA	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	3 cut(s)	169, 310, 561
SmoI	CTYRAG	3 cut(s)	169, 310, 561
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	5 cut(s)	116, 126, 350, 402, 846
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	5 cut(s)	260, 291, 519, 645, 726
StyD4I	CCNGG	2 cut(s)	207, 457
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	2 cut(s)	333, 347
TasI	AATT	5 cut(s)	116, 126, 350, 402, 846
TfiI	GAWTC	3 cut(s)	8, 29, 527
Tru1I	TTAA	3 cut(s)	311, 411, 845
Tru9I	TTAA	3 cut(s)	311, 411, 845
TscAI	CASTG	4 cut(s)	76, 682, 736, 748
TseFI	GTSAC	3 cut(s)	314, 534, 853
TseI	GCWGC	6 cut(s)	178, 185, 188, 356, 554, 557
Tsp45I	GTSAC	3 cut(s)	314, 534, 853
TspDTI	ATGAA	6 cut(s)	39, 96, 158, 624, 774, 817
TspGWI	ACGGA	2 cut(s)	43, 655
TspRI	CASTG	4 cut(s)	76, 682, 736, 748
Vha464I	CTTAAG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	126, 402
XspI	CTAG	5 cut(s)	260, 291, 519, 645, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.