Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006974

Physical Location & Seq

Genomic Coordinates Forward (+)

15792607 .. 15794862

Gene Structure 2256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCCAATATCATTTCAGCTCATGGATTATCTTTCTCATCTACCAGCAATTACAGGACTTCTGGTCTTGGTTTTGTTGTACCTATGGAGGGTGAGAGTTCAGGATCACAAAATGAAGGGCCTCATGTCCCCAGAACCACATGGTGCCCTGCCAATTATAGGTCACCTCCATCAGCTAGGTAGCCGAAACCCACTCTGTCGGACCTTAGCAAAAATGGCTGACAAGTATGGTCCAATCTTTATTATAAGGCTCGGTAAGAACCGTGTCCTGGTGATCAGCAACTATGAAGCAGTCAAGGAATGTTTCACCACAAACGACAGAGTTTTCGCCGCCAGACCAATTTCGGCACAGGGTAAGTACCTTGGTTACAATTATGCAGCATTCGGGTTCTCACCTTATGGAACATATTGGCGTGACATGAGAAAGTTGGTCGTGGTCGAGTTGCTCTCTAGTCGTAGGCTAGAGACTTTGAAACATGTACAAGTCTCTGAGGTTGATGCTTTTGTTAAAGGGTTGTATTCATTTTGGAAAAACAAAGGACATGATGGTCAAAGCAAGGTGGAGATCAGTGAGTGGATTGACCACCTAACCTTGAACATGATCACCAGAATGATTGCTGGGAAGAGGTACTTTGGTAAAGAGATTGATAAACTTGATGGAGAGGAAAAGAGGATTGGGAAGCTTATGAAGGACTTTATGTACGTAGCTGGCTTCCCAGTTGTTTCTGATGTAATTGGGTTTCCAGAGTGGATTGATTTCAAGGGGAAACTGAAAACTATGAAGAATATAGGGAGCCAGTTAGAGTCTTTGATGAAAAGTTGGGTTGAAGAACATCATACCAAGAAGCACAAGGGTGATTCAAGCAACCAGCAGCAGGACTTGATTAGTGTTCTGCTATCTGAAATTGAGGACAGTTCTATGCTTGGTCATACCAGAGATACTATTATCAAGGCAACAGCAATGGTATGTTTAAATTATTATGAGTATATATGTATAAAAATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

336

Amino Acids

38.41

Weight (kDa)

9.24

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	44 - 320	7e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18410 FvH4_2g18410 FvH4_2g18411 FvH4_2g18420
malus_domestica	MD05G1169700.v1.1 MD05G1169800.v1.1 MD05G1169900.v1.1 MD05G1170000.v1.1 MD05G1170100.v1.1
prunus_persica	Prupe.8G197100_v2.0.a1 Prupe.8G197300_v2.0.a1
pyrus_communis	pycom05g15720 pycom05g15730
rosa_chinensis	RchiOBHm_Chr6g0283841 RchiOBHm_Chr6g0283881
rosa_laevigata	RLG00000012789 RLG00000012792
rosa_multiflora	Rmu_ssc0000442.1_g000004
rosa_roxburghii	Rroxscaffold_7G00185130 Rroxscaffold_7G00185140
rosa_rugosa	Rorug06G0158100
rosa_samantha	Rh6CG273300
rosa_wichuraiana	Rw6G023320 Rw6G023330 Rw6G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AasI	GACNNNNNNGTC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	5 cut(s)	80, 359, 480, 629, 701
AfiI	CCNNNNNNNGG	4 cut(s)	88, 158, 268, 874
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	472, 595, 760, 827, 861
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	4 cut(s)	19, 175, 682, 707
AluI	AGCT	4 cut(s)	19, 175, 682, 707
Alw26I	GTCTC	2 cut(s)	458, 490
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	377, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	3 cut(s)	118, 201, 230
AsuHPI	GGTGA	7 cut(s)	103, 155, 283, 298, 384, 595, 866
AvaII	GGWCC	2 cut(s)	201, 230
BaeGI	GKGCMC	1 cut(s)	148
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	389, 883
BccI	CCATC	3 cut(s)	177, 539, 650
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	2 cut(s)	273, 600
BcoDI	GTCTC	2 cut(s)	458, 490
BfaI	CTAG	3 cut(s)	176, 450, 461
BisI	GCNGC	3 cut(s)	330, 378, 872
BlsI	GCNGC	3 cut(s)	331, 379, 873
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	201, 230
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	3 cut(s)	118, 201, 230
BmiI	GGNNCC	2 cut(s)	145, 794
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	710
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	710
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
Bpu10I	CCTNAGC	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 158, 268, 874
Bse1I	ACTGG	2 cut(s)	716, 796
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	361
BseLI	CCNNNNNNNGG	4 cut(s)	88, 158, 268, 874
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	716, 796
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	389, 883
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	88, 158, 268, 874
BsmAI	GTCTC	2 cut(s)	458, 490
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	103, 273, 564, 600
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	145, 794
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	966
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	716, 796
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	103, 273, 564, 600
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	263, 914
Bst6I	CTCTTC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	478
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	2 cut(s)	205, 489
BstEII	GGTNACC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	106, 276, 567, 603
BstMAI	GTCTC	2 cut(s)	458, 490
BstMBI	GATC	4 cut(s)	103, 273, 564, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	479
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	148
BstSNI	TACGTA	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	389, 883
BsuRI	GGCC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	709
Cfr13I	GGNCC	3 cut(s)	118, 201, 230
Csp6I	GTAC	5 cut(s)	79, 358, 479, 628, 700
CviAII	CATG	8 cut(s)	22, 124, 140, 418, 476, 542, 598, 1005
CviQI	GTAC	5 cut(s)	79, 358, 479, 628, 700
DdeI	CTNAG	2 cut(s)	205, 489
DpnI	GATC	4 cut(s)	105, 275, 566, 602
DpnII	GATC	4 cut(s)	103, 273, 564, 600
DraI	TTTAAA	1 cut(s)	972
DraIII	CACNNNGTG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	546
DriI	GACNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	617
Eam1105I	GACNNNNNGTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	617
Eco105I	TACGTA	1 cut(s)	703
Eco130I	CCWWGG	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	201, 230
Eco91I	GGTNACC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	8 cut(s)	25, 127, 143, 421, 479, 545, 601, 1008
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	8 cut(s)	21, 123, 139, 417, 475, 541, 597, 1004
FbaI	TGATCA	2 cut(s)	273, 600
Fnu4HI	GCNGC	3 cut(s)	330, 378, 872
Fsp4HI	GCNGC	3 cut(s)	330, 378, 872
FspBI	CTAG	3 cut(s)	176, 450, 461
GluI	GCNGC	3 cut(s)	330, 378, 872
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	8 cut(s)	25, 127, 143, 421, 479, 545, 601, 1008
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	2 cut(s)	803, 857
HphI	GGTGA	7 cut(s)	103, 155, 283, 298, 384, 595, 866
Hpy188I	TCNGA	4 cut(s)	201, 490, 727, 901
Hpy188III	TCNNGA	2 cut(s)	101, 743
HpyAV	CCTTC	2 cut(s)	109, 682
HpyCH4III	ACNGT	2 cut(s)	263, 914
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	205, 489
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	8 cut(s)	25, 127, 143, 421, 479, 545, 601, 1008
Ksp22I	TGATCA	2 cut(s)	273, 600
Kzo9I	GATC	4 cut(s)	103, 273, 564, 600
LmnI	GCTCC	1 cut(s)	792
Lsp1109I	GCAGC	2 cut(s)	389, 883
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	3 cut(s)	176, 450, 461
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	3 cut(s)	161, 365, 413
MalI	GATC	4 cut(s)	105, 275, 566, 602
MboI	GATC	4 cut(s)	103, 273, 564, 600
MboII	GAAGA	3 cut(s)	634, 793, 839
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	7 cut(s)	48, 153, 339, 370, 732, 903, 973
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	81, 131, 176, 484, 618, 655, 663, 901
MseI	TTAA	2 cut(s)	507, 971
MslI	CAYNNNNRTG	2 cut(s)	608, 852
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	4 cut(s)	103, 273, 564, 600
NlaIII	CATG	8 cut(s)	25, 127, 143, 421, 479, 545, 601, 1008
NlaIV	GGNNCC	2 cut(s)	145, 794
NmuCI	GTSAC	2 cut(s)	161, 413
NspI	RCATGY	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	852
PciI	ACATGT	1 cut(s)	475
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	857
PkrI	GCNGC	3 cut(s)	331, 379, 873
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
Ppu21I	YACGTR	1 cut(s)	703
PscI	ACATGT	1 cut(s)	475
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	267
PspEI	GGTNACC	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	145, 794
PspPI	GGNCC	3 cut(s)	118, 201, 230
RsaI	GTAC	5 cut(s)	80, 359, 480, 629, 701
RsaNI	GTAC	5 cut(s)	79, 358, 479, 628, 700
RseI	CAYNNNNRTG	2 cut(s)	608, 852
SaqAI	TTAA	2 cut(s)	507, 971
SatI	GCNGC	3 cut(s)	330, 378, 872
Sau3AI	GATC	4 cut(s)	103, 273, 564, 600
Sau96I	GGNCC	3 cut(s)	118, 201, 230
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	2 cut(s)	201, 230
SmiMI	CAYNNNNRTG	2 cut(s)	608, 852
SnaBI	TACGTA	1 cut(s)	703
Sse9I	AATT	7 cut(s)	48, 153, 339, 370, 732, 903, 973
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	3 cut(s)	176, 450, 461
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	263, 914
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	1 cut(s)	438
TasI	AATT	7 cut(s)	48, 153, 339, 370, 732, 903, 973
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	857
Tru1I	TTAA	2 cut(s)	507, 971
Tru9I	TTAA	2 cut(s)	507, 971
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	2 cut(s)	161, 413
TseI	GCWGC	2 cut(s)	377, 871
Tsp45I	GTSAC	2 cut(s)	161, 413
TspDTI	ATGAA	6 cut(s)	128, 300, 510, 701, 794, 827
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	201, 230
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	3 cut(s)	176, 450, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.