Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006974

Physical Location & Seq

Genomic Coordinates Forward (+)

19219038 .. 19221891

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGCACAATATATTTCGAGCACTACTTGTCACCATAGTCAGCATGGATTTGCCTTCTCATCTTGTAGCAATTGGAGGGATTTTACTCTTTATTCTGTATCTATGGAGGGTAAAAATCCAAAGTCACAAAACCAAGGGCATCTTAACCCCACAACCATCAGGTGCCCTGCCAATCATAGGACACCTCCACAAACTTGGAGGCAAAAAGCCACTTTGCAGAACCCTAGCATCCATGGCTGACAAGTACGGTCCAATCTTCACCATACGGCTTGGCAAGGACCCTGCACTTGCGATCAGCAACTATGATGCAGTCAAGGAATGCTTCACCAAAAACGACATCGTTTTCGCAGCGAGACCAAAGTCGGCACATGGCAGGTACCTTGGTTACAATTATGCAGGTTTCGGGTTCTCACCATACGGCACGTACTGGCGTAACATGAGAAAAGTGGTCATGGCTGAGTTGCTATCTAGCCGCAGGCTTCAGACATTAAAACATGTCCAAATCTCTGAGGTTGATTCTTTTATCAAGGGGTTGTACGAAATTTGCAAAACAAAGGGGGAAAATGGTCAAAGCAAGGTGGTGATTAGCGAGTGGATTGAGCACCTGACTTTGAATGTAATTACTCAAATGATTGCTGGGAAGAGGTATTTTGATTGGGGTAAAGTGGGAAATGACTCAGATAATGAGGGAGAGAATAAGAGGATTCGGGAAATCGTGAAGGAGTTTATGCTTGTGTCTGGGATGCCAGTTATTTCTGATATGATTGGGTATCCGGATTGGATTGATTTTCTGGGGCAAGTGAAGAATATGAAGCGTATAGGGAAGGAGTTGGATTCTCTAACGGCAAGTTGGATTGAAGAACATAATAATGCAAGGAAGGAGATTGACTCAAGGGACAAGCTCGACTTCATTGATGTCATGCTTTCTGTGATTGAGGACAATACTGTGCTTGGTTATACTCGTGAAACTATCATCAAGGCAACATCGCAGAATCTGATCATAGCTGGCTCAGATACCACAGCAATCAGCTTGAAGTGGATCATCTCTTTATTATTAAACAACAGGCATGTTTTGAAGCACGCACAAGAAGAGATAAACCTAATAGTTGGCACAGAGAGATGGGTTGAAGACACTGATATCGAAAACCTAACTTACCTACAAGCCATTGTCAAGGAAACCCTACGTCTATATCCTCCAGGTCCACTCTCAGTCCCACATGAAGCAATGGAAGACTGCCAAGTTTGTGGCTTTCACATTCCAAAGGGCACACGTTTATTTGTCAATTTGTGGAAATTGCACAGAGACCCAACTGTGTGGTCAGACCCTGAAATGTTTTACCCAGATAGGTTTCTTACAACCCAAGCAAGCATTGATGTCTCTGGTAACCATTTTGAGTTCATTCCATTTGGGTCCGGAAGAAGATCTTGTCCAGGTCTCACATTCGCAATGCAAGTTATCCACTTGACTCTTGGTAGATTGATTCAAGGATTTGAATTGGCTACTCCATTGGACATGCCCGTGGACATGACTGAAGGACTAGGCGTTACTTTGCCAAAGGCAACTTCACTTGAAGTTGTGCTAACTCCACGCTTGCCCATTGAATTCTATGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

539

Amino Acids

60.86

Weight (kDa)

7.68

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	50 - 519	6.9e-98	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18410 FvH4_2g18410 FvH4_2g18411 FvH4_2g18420
malus_domestica	MD05G1169700.v1.1 MD05G1169800.v1.1 MD05G1169900.v1.1 MD05G1170000.v1.1 MD05G1170100.v1.1
prunus_persica	Prupe.8G197100_v2.0.a1 Prupe.8G197300_v2.0.a1
pyrus_communis	pycom05g15720 pycom05g15730
rosa_chinensis	RchiOBHm_Chr6g0283841 RchiOBHm_Chr6g0283881
rosa_laevigata	RLG00000012789 RLG00000012792
rosa_multiflora	Rmu_ssc0000442.1_g000004
rosa_roxburghii	Rroxscaffold_7G00185130 Rroxscaffold_7G00185140
rosa_rugosa	Rorug06G0158100
rosa_samantha	Rh6CG273300
rosa_wichuraiana	Rw6G023320 Rw6G023330 Rw6G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	363, 386
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	2 cut(s)	161, 375
AccIII	TCCGGA	2 cut(s)	772, 1412
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	1 cut(s)	1046
AcsI	RAATTY	2 cut(s)	540, 1601
AcuI	CTGAAG	2 cut(s)	464, 1551
AfaI	GTAC	4 cut(s)	245, 377, 425, 536
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflIII	ACRYGT	2 cut(s)	493, 1268
AgsI	TTSAA	9 cut(s)	613, 857, 1033, 1075, 1127, 1484, 1493, 1571, 1601
AjnI	CCWGG	2 cut(s)	1195, 1429
AjuI	GAANNNNNNNTTGG	2 cut(s)	1546, 1578
AluBI	AGCT	3 cut(s)	901, 1004, 1029
AluI	AGCT	3 cut(s)	901, 1004, 1029
Alw21I	GWGCWC	2 cut(s)	22, 603
Alw26I	GTCTC	4 cut(s)	346, 1296, 1381, 1439
AlwI	GGATC	1 cut(s)	1046
AlwNI	CAGNNNCTG	2 cut(s)	994, 1325
Aor13HI	TCCGGA	2 cut(s)	772, 1412
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	540, 1601
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp718I	GGTACC	1 cut(s)	375
AspS9I	GGNCC	4 cut(s)	248, 277, 1199, 1410
AsuHPI	GGTGA	5 cut(s)	22, 250, 316, 402, 592
AvaII	GGWCC	4 cut(s)	248, 277, 1199, 1410
BaeGI	GKGCMC	2 cut(s)	166, 1268
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BanI	GGYRCC	2 cut(s)	161, 375
BauI	CACGAG	1 cut(s)	960
BbsI	GAAGAC	2 cut(s)	1134, 1236
Bbv12I	GWGCWC	2 cut(s)	22, 603
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	2 cut(s)	163, 1113
BceAI	ACGGC	3 cut(s)	281, 433, 858
BciT130I	CCWGG	2 cut(s)	1197, 1431
BciVI	GTATCC	1 cut(s)	780
BclI	TGATCA	1 cut(s)	996
BcoDI	GTCTC	4 cut(s)	346, 1296, 1381, 1439
BfaI	CTAG	3 cut(s)	224, 468, 1538
BfuAI	ACCTGC	2 cut(s)	363, 386
BfuI	GTATCC	1 cut(s)	780
BglII	AGATCT	1 cut(s)	1421
BisI	GCNGC	2 cut(s)	348, 472
BlsI	GCNGC	2 cut(s)	349, 473
Bme1390I	CCNGG	2 cut(s)	1197, 1431
Bme18I	GGWCC	4 cut(s)	248, 277, 1199, 1410
BmgT120I	GGNCC	4 cut(s)	248, 277, 1199, 1410
BmiI	GGNNCC	4 cut(s)	163, 279, 377, 1411
BmrFI	CCNGG	2 cut(s)	1197, 1431
BmsI	GCATC	4 cut(s)	147, 236, 295, 732
BoxI	GACNNNNGTC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	1134, 1236
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	1 cut(s)	1179
BpuEI	CTTGAG	1 cut(s)	874
BsaAI	YACGTR	1 cut(s)	423
BsaI	GGTCTC	3 cut(s)	346, 1296, 1439
BsaJI	CCNNGG	4 cut(s)	132, 231, 379, 1518
BsaWI	WCCGGW	2 cut(s)	772, 1412
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	431, 746
Bse3DI	GCAATG	2 cut(s)	1230, 1452
BseAI	TCCGGA	2 cut(s)	772, 1412
BseBI	CCWGG	2 cut(s)	1197, 1431
BseDI	CCNNGG	4 cut(s)	132, 231, 379, 1518
BseGI	GGATG	2 cut(s)	227, 747
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	2 cut(s)	1230, 1452
BseMII	CTCAG	5 cut(s)	447, 498, 690, 1023, 1221
BseNI	ACTGG	2 cut(s)	431, 746
BseSI	GKGCMC	2 cut(s)	166, 1268
BseXI	GCAGC	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	267
BshNI	GGYRCC	2 cut(s)	161, 375
BsiHKAI	GWGCWC	2 cut(s)	22, 603
BsiSI	CCGG	2 cut(s)	773, 1413
BslFI	GGGAC	2 cut(s)	908, 1196
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	4 cut(s)	346, 1296, 1381, 1439
BsmFI	GGGAC	2 cut(s)	908, 1196
BsmI	GAATGC	1 cut(s)	323
Bso31I	GGTCTC	3 cut(s)	346, 1296, 1439
Bsp1286I	GDGCHC	4 cut(s)	22, 166, 603, 1268
Bsp13I	TCCGGA	2 cut(s)	772, 1412
Bsp143I	GATC	4 cut(s)	291, 996, 1038, 1421
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	1 cut(s)	472
BspCNI	CTCAG	5 cut(s)	448, 499, 689, 1022, 1220
BspEI	TCCGGA	2 cut(s)	772, 1412
BspLI	GGNNCC	4 cut(s)	163, 279, 377, 1411
BspMI	ACCTGC	2 cut(s)	363, 386
BspPI	GGATC	1 cut(s)	1046
BspT107I	GGYRCC	2 cut(s)	161, 375
BspTNI	GGTCTC	3 cut(s)	346, 1296, 1439
BsrDI	GCAATG	2 cut(s)	1230, 1452
BsrI	ACTGG	2 cut(s)	431, 746
BssECI	CCNNGG	4 cut(s)	132, 231, 379, 1518
BssMI	GATC	4 cut(s)	291, 996, 1038, 1421
BssSI	CACGAG	1 cut(s)	960
BssT1I	CCWWGG	3 cut(s)	132, 231, 379
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	2 cut(s)	1197, 1431
Bst4CI	ACNGT	3 cut(s)	248, 946, 1312
Bst6I	CTCTTC	2 cut(s)	635, 1083
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	5 cut(s)	476, 1006, 1080, 1366, 1592
BstDEI	CTNAG	5 cut(s)	456, 507, 676, 1009, 1207
BstDSI	CCRYGG	2 cut(s)	231, 1518
BstEII	GGTNACC	1 cut(s)	1382
BstF5I	GGATG	2 cut(s)	227, 747
BstKTI	GATC	4 cut(s)	294, 999, 1041, 1424
BstMAI	GTCTC	4 cut(s)	346, 1296, 1381, 1439
BstMBI	GATC	4 cut(s)	291, 996, 1038, 1421
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	1197, 1431
BstNSI	RCATGY	3 cut(s)	497, 1070, 1516
BstPAI	GACNNNNGTC	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	1382
BstSCI	CCNGG	2 cut(s)	1195, 1429
BstSLI	GKGCMC	2 cut(s)	166, 1268
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	2 cut(s)	1134, 1236
BstX2I	RGATCY	1 cut(s)	1421
BstXI	CCANNNNNNTGG	3 cut(s)	194, 1244, 1314
BstYI	RGATCY	1 cut(s)	1421
BsuI	GTATCC	1 cut(s)	780
BtgI	CCRYGG	2 cut(s)	231, 1518
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	227, 747
BtsIMutI	CAGTG	1 cut(s)	1131
BveI	ACCTGC	2 cut(s)	363, 386
Cac8I	GCNNGC	5 cut(s)	476, 1006, 1080, 1366, 1592
CaiI	CAGNNNCTG	2 cut(s)	994, 1325
Cfr13I	GGNCC	4 cut(s)	248, 277, 1199, 1410
Csp6I	GTAC	4 cut(s)	244, 376, 424, 535
CviQI	GTAC	4 cut(s)	244, 376, 424, 535
DdeI	CTNAG	5 cut(s)	456, 507, 676, 1009, 1207
DpnI	GATC	4 cut(s)	293, 998, 1040, 1423
DpnII	GATC	4 cut(s)	291, 996, 1038, 1421
Eam1104I	CTCTTC	2 cut(s)	635, 1083
EarI	CTCTTC	2 cut(s)	635, 1083
Eco130I	CCWWGG	3 cut(s)	132, 231, 379
Eco31I	GGTCTC	3 cut(s)	346, 1296, 1439
Eco32I	GATATC	1 cut(s)	1138
Eco47I	GGWCC	4 cut(s)	248, 277, 1199, 1410
Eco57I	CTGAAG	2 cut(s)	464, 1551
Eco91I	GGTNACC	1 cut(s)	1382
EcoO109I	RGGNCCY	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	1382
EcoRI	GAATTC	1 cut(s)	1601
EcoRII	CCWGG	2 cut(s)	1195, 1429
EcoRV	GATATC	1 cut(s)	1138
EcoT14I	CCWWGG	3 cut(s)	132, 231, 379
ErhI	CCWWGG	3 cut(s)	132, 231, 379
FalI	AAGNNNNNCTT	8 cut(s)	125, 157, 305, 337, 890, 922, 1408, 1440
FaqI	GGGAC	2 cut(s)	908, 1196
FbaI	TGATCA	1 cut(s)	996
Fnu4HI	GCNGC	2 cut(s)	348, 472
FokI	GGATG	2 cut(s)	214, 754
Fsp4HI	GCNGC	2 cut(s)	348, 472
FspBI	CTAG	3 cut(s)	224, 468, 1538
GluI	GCNGC	2 cut(s)	348, 472
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	1179
HapII	CCGG	2 cut(s)	773, 1413
HinfI	GANTC	8 cut(s)	515, 674, 703, 833, 887, 991, 1465, 1480
HpaII	CCGG	2 cut(s)	773, 1413
HphI	GGTGA	5 cut(s)	22, 250, 316, 402, 592
Hpy166II	GTNNAC	2 cut(s)	1202, 1522
Hpy188I	TCNGA	7 cut(s)	483, 508, 679, 757, 996, 1012, 1321
Hpy188III	TCNNGA	5 cut(s)	707, 715, 773, 962, 1413
Hpy8I	GTNNAC	2 cut(s)	1202, 1522
HpyAV	CCTTC	5 cut(s)	63, 712, 817, 871, 1526
HpyCH4III	ACNGT	3 cut(s)	248, 946, 1312
HpyCH4IV	ACGT	3 cut(s)	422, 1183, 1270
HpyCH4V	TGCA	9 cut(s)	4, 216, 284, 308, 395, 546, 872, 1297, 1450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	5 cut(s)	456, 507, 676, 1009, 1207
HpySE526I	ACGT	3 cut(s)	422, 1183, 1270
Kpn2I	TCCGGA	2 cut(s)	772, 1412
KpnI	GGTACC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	996
Kzo9I	GATC	4 cut(s)	291, 996, 1038, 1421
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	4 cut(s)	147, 236, 295, 732
MaeI	CTAG	3 cut(s)	224, 468, 1538
MaeII	ACGT	3 cut(s)	422, 1183, 1270
MaeIII	GTNAC	6 cut(s)	28, 122, 383, 431, 1382, 1543
MalI	GATC	4 cut(s)	293, 998, 1040, 1423
MboI	GATC	4 cut(s)	291, 996, 1038, 1421
MboII	GAAGA	9 cut(s)	247, 652, 814, 869, 1100, 1139, 1241, 1428, 1431
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	1421
MhlI	GDGCHC	4 cut(s)	22, 166, 603, 1268
MluCI	AATT	8 cut(s)	69, 388, 540, 618, 1282, 1292, 1493, 1601
MlyI	GAGTC	3 cut(s)	668, 881, 1459
MmeI	TCCRAC	2 cut(s)	810, 830
MroI	TCCGGA	2 cut(s)	772, 1412
MseI	TTAA	3 cut(s)	143, 488, 1055
MslI	CAYNNNNRTG	2 cut(s)	867, 1517
MspI	CCGG	2 cut(s)	773, 1413
MspR9I	CCNGG	2 cut(s)	1197, 1431
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	1197, 1431
MwoI	GCNNNNNNNGC	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	4 cut(s)	291, 996, 1038, 1421
NlaIV	GGNNCC	4 cut(s)	163, 279, 377, 1411
NmuCI	GTSAC	2 cut(s)	28, 122
NspI	RCATGY	3 cut(s)	497, 1070, 1516
PciI	ACATGT	1 cut(s)	493
PctI	GAATGC	1 cut(s)	323
PfeI	GAWTC	5 cut(s)	515, 703, 833, 991, 1480
PkrI	GCNGC	2 cut(s)	349, 473
PleI	GAGTC	3 cut(s)	668, 881, 1459
PpsI	GAGTC	3 cut(s)	668, 881, 1459
Ppu21I	YACGTR	1 cut(s)	423
PpuMI	RGGWCCY	1 cut(s)	277
PscI	ACATGT	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	1195, 1429
PspEI	GGTNACC	1 cut(s)	1382
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	2 cut(s)	1195, 1429
PspN4I	GGNNCC	4 cut(s)	163, 279, 377, 1411
PspPI	GGNCC	4 cut(s)	248, 277, 1199, 1410
PspPPI	RGGWCCY	1 cut(s)	277
PstNI	CAGNNNCTG	2 cut(s)	994, 1325
PsuI	RGATCY	1 cut(s)	1421
RsaI	GTAC	4 cut(s)	245, 377, 425, 536
RsaNI	GTAC	4 cut(s)	244, 376, 424, 535
RseI	CAYNNNNRTG	2 cut(s)	867, 1517
SaqAI	TTAA	3 cut(s)	143, 488, 1055
SatI	GCNGC	2 cut(s)	348, 472
Sau3AI	GATC	4 cut(s)	291, 996, 1038, 1421
Sau96I	GGNCC	4 cut(s)	248, 277, 1199, 1410
SchI	GAGTC	3 cut(s)	668, 881, 1459
ScrFI	CCNGG	2 cut(s)	1197, 1431
SduI	GDGCHC	4 cut(s)	22, 166, 603, 1268
SfaNI	GCATC	4 cut(s)	147, 236, 295, 732
SinI	GGWCC	4 cut(s)	248, 277, 1199, 1410
SmiMI	CAYNNNNRTG	2 cut(s)	867, 1517
SmlI	CTYRAG	1 cut(s)	889
SmoI	CTYRAG	1 cut(s)	889
Sse9I	AATT	8 cut(s)	69, 388, 540, 618, 1282, 1292, 1493, 1601
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	3 cut(s)	224, 468, 1538
StyD4I	CCNGG	2 cut(s)	1195, 1429
StyI	CCWWGG	3 cut(s)	132, 231, 379
TaaI	ACNGT	3 cut(s)	248, 946, 1312
TaiI	ACGT	3 cut(s)	425, 1186, 1273
TaqI	TCGA	3 cut(s)	16, 903, 1140
TasI	AATT	8 cut(s)	69, 388, 540, 618, 1282, 1292, 1493, 1601
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	5 cut(s)	515, 703, 833, 991, 1480
Tru1I	TTAA	3 cut(s)	143, 488, 1055
Tru9I	TTAA	3 cut(s)	143, 488, 1055
TscAI	CASTG	1 cut(s)	1138
TseFI	GTSAC	2 cut(s)	28, 122
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	28, 122
TspDTI	ATGAA	4 cut(s)	824, 898, 1233, 1387
TspRI	CASTG	1 cut(s)	1138
VpaK11BI	GGWCC	4 cut(s)	248, 277, 1199, 1410
XapI	RAATTY	2 cut(s)	540, 1601
XceI	RCATGY	3 cut(s)	497, 1070, 1516
XcmI	CCANNNNNNNNNTGG	2 cut(s)	40, 1466
XspI	CTAG	3 cut(s)	224, 468, 1538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.