Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006974

Physical Location & Seq

Genomic Coordinates Forward (+)

29973977 .. 29977374

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1170100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATAGAATTTTCAAATGACTCATTAGAAAGTGTCATTTTGAAAGTCCCTTGTTTAGAGTCTTCTAATACATTTTTTATTCCATTTTGGTCTGGAAGACGGTCATGTCCAGGTTTTAAATTTGCGTTGCAAGATATGCACTTGACAATTGGAAGATTGCTTCAAGGGTTTGAATTGGCTACACCATTAGACTTGTCGGTGGACATGACTGAAGGAATGGGTGTAAAACTATTAAGACCTAGAGTTAATACTACAAAGGTTTCAGATCCATGCAATCGTAAAAGTACAATATTATGGTGCTGTGTTTATGTTTGGTTTGTACCTGAAGAAGCTATTGCAAGGGTTCAAGTTTCTCTAACACTCGATCTTCTGCTCAATGGAAAGCCTTACTTTCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

134

Amino Acids

15.15

Weight (kDa)

6.71

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	25 - 80	4e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18410 FvH4_2g18410 FvH4_2g18411 FvH4_2g18420
malus_domestica	MD05G1169700.v1.1 MD05G1169800.v1.1 MD05G1169900.v1.1 MD05G1170000.v1.1 MD05G1170100.v1.1
prunus_persica	Prupe.8G197100_v2.0.a1 Prupe.8G197300_v2.0.a1
pyrus_communis	pycom05g15720 pycom05g15730
rosa_chinensis	RchiOBHm_Chr6g0283841 RchiOBHm_Chr6g0283881
rosa_laevigata	RLG00000012789 RLG00000012792
rosa_multiflora	Rmu_ssc0000442.1_g000004
rosa_roxburghii	Rroxscaffold_7G00185130 Rroxscaffold_7G00185140
rosa_rugosa	Rorug06G0158100
rosa_samantha	Rh6CG273300
rosa_wichuraiana	Rw6G023320 Rw6G023330 Rw6G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	8, 119
AcuI	CTGAAG	2 cut(s)	231, 345
AfaI	GTAC	2 cut(s)	286, 321
AgsI	TTSAA	5 cut(s)	15, 43, 164, 173, 347
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
AlwI	GGATC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	8, 119
BbsI	GAAGAC	2 cut(s)	54, 103
BciT130I	CCWGG	1 cut(s)	111
BfaI	CTAG	2 cut(s)	240, 400
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	2 cut(s)	54, 103
BseBI	CCWGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	265, 364
BspPI	GGATC	1 cut(s)	260
BssMI	GATC	2 cut(s)	265, 364
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	268, 367
BstMBI	GATC	2 cut(s)	265, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV2I	GAAGAC	2 cut(s)	54, 103
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	285, 320
CviAII	CATG	3 cut(s)	105, 205, 270
CviJI	RGCY	3 cut(s)	179, 332, 385
CviKI_1	RGCY	3 cut(s)	179, 332, 385
CviQI	GTAC	2 cut(s)	285, 320
DpnI	GATC	2 cut(s)	267, 366
DpnII	GATC	2 cut(s)	265, 364
DraI	TTTAAA	1 cut(s)	118
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	231, 345
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	108, 208, 273
FaiI	YATR	6 cut(s)	106, 137, 206, 271, 295, 309
FalI	AAGNNNNNCTT	1 cut(s)	374
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	3 cut(s)	104, 204, 269
FspBI	CTAG	2 cut(s)	240, 400
Hin1II	CATG	3 cut(s)	108, 208, 273
HinfI	GANTC	2 cut(s)	20, 59
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	130, 139, 273, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	108, 208, 273
Kzo9I	GATC	2 cut(s)	265, 364
LpnPI	CCDG	4 cut(s)	78, 96, 123, 336
MaeI	CTAG	2 cut(s)	240, 400
MalI	GATC	2 cut(s)	267, 366
MboI	GATC	2 cut(s)	265, 364
MboII	GAAGA	5 cut(s)	54, 108, 165, 338, 359
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	4 cut(s)	8, 119, 147, 173
MlyI	GAGTC	2 cut(s)	14, 68
MseI	TTAA	3 cut(s)	117, 233, 246
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	265, 364
NlaIII	CATG	3 cut(s)	108, 208, 273
PleI	GAGTC	2 cut(s)	14, 67
PpsI	GAGTC	2 cut(s)	14, 67
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	2 cut(s)	286, 321
RsaNI	GTAC	2 cut(s)	285, 320
SaqAI	TTAA	3 cut(s)	117, 233, 246
Sau3AI	GATC	2 cut(s)	265, 364
SchI	GAGTC	2 cut(s)	14, 68
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	5 cut(s)	115, 241, 261, 325, 334
Sse9I	AATT	4 cut(s)	8, 119, 147, 173
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	240, 400
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	363
TasI	AATT	4 cut(s)	8, 119, 147, 173
TatI	WGTACW	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	117, 233, 246
Tru9I	TTAA	3 cut(s)	117, 233, 246
XapI	RAATTY	2 cut(s)	8, 119
XspI	CTAG	2 cut(s)	240, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.