Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Reverse (-)

18285279 .. 18287850

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGTCATGCTCTTCAAGAAGTGCTGCTTCAAAAGGCAAGCTTTCGTCTTTATTCTCAAACACAGAAAGACCCACTTCTTCAAATTCAACCAAGCTTTCATCTTTATCAACAAACCAAGTTGCAGCTAAACCCACTTCTTCAACTCCCACAACGTCAGCAAAAGACCCAATTCCCAGTGTTCCAATCCAAACCCCACTTGAAAGTTTCCTCCAAACCAATTGTAAGTCAGGTGATTTCACTCTCAATGAAGCAGTTCACTATTTTGACCACATGATTCATATGCAACCTCTTCCTCGAATGGCATCATTCAATCGTTTGTTAGGTGGACTTGCCAAGAGTAAGCATTACTCTCATGTTTTCTCATTTTGCAATAAGTTAACGTCTTCTGGGTTGTTGCCTGATTTCATTACGCTTAATATTTTGCTCAATTGCTTTTGTAATGTGAAACGGGTTTGTGATGGTTTGGTGGTTCTGGGAAGTATGATTAGGAGGGGTTATAGACCAAGTGCTGTGACTTTTACTTGTTTGGTTAAAGGGTTGTGTGTGGAGGATAGGATTGATGAGGCATTGATGTTGTTGGAGAAAATGGTCAAGTTTCAGTGTCAGCCTACTGTGATGACTTGTGGTACTTTGATTAGTGGCTTGTGCAGAGCTGGCAAGACTAGTGTGGCACTTAGGTTACATGAAGATATGGCTAAGGGGAATGGCGGATTTGGTGTTTACTGTAAGCCGAATGTGGTGACTTATGGGATTATTATTGATAGGCTTTGTAAGGATGGCAGGATAGATGAGGCAAAAGAACTTTTCGTAGAAATGAAAGATAGAGAAATTCTTCCTGATGTGATTGTGTATAGTGCTCTGATTCATGGTTTGTACTATAATAAAAAATGGGAAGCAGGCAAAGCGTTGTTGCATGAGATGGTGCATTGTGGTATCAAGCCTAATCTGGTGACGTTCAATGTGCTAATAGCGGCACTTTGCAGAAGGGGAAATGTGAATGATAGCAGGGATTTGCTAAAGCTTATGATACAAAGAGGCATTAGTCCTGATTTATTTACATACAACACTTTGATAGATGGCTTCTGTTTGGCTGGATACCTTAATGAAGCGAGAGAGCTGTTTCATGCAATTTCAAGTAGAGGGTGTCAACCTGATGCTGTTAGCTACAATGTGTTGATCAGTGGATACTGCAAATATTGGAAGATACATGAAGCTGTCAATATTTACGAGGAAATGATCTGCAAAGGAGTTAGTCCAACAGTAGTAACTTATAATGCCTTACTAACTGGTCTGTTTAAGTTAGGAAGAGTTCAGGATGCACAGAAGCTGTTTTCTGAGATGCAAAGTCAGAACGTGCTACCTAATTTATCTACATATAAGATATTGTTGGACAGGCTTTGCAAAAATGATTGCATACCAGAGGCAACAGATATATTTCATACATTAGAAAACAGCCGCAGCTGTAAACTTAGCGTAGAAATTTTTAATTCACTTATTAATGGGTATTGTAAGGCACGGAAGCTTGAAACTGCTTGGGATCTATTTCACAAAATGTCAGGAAAGGGCCTGGTACCAAATGTTATAACATATAGCATGATGATTCATGGGCTCTGTATAGAAGGACAACTCGAAAAGGCAAATAGTTTGTTTTTGGAAATGGAAGGCAAGGGTTGTGCTCCAAACCTCGTCACTTTTAATACCCTTATGCGTGGTTTCTGCCAAAATGATGACTTGGAAAAGGTTGTTGAACTTCTTCATAAGATGTCGGAAAGAAATCTGTCACCAGATATCTCTACAACCTCCATTGTCATAGACTTACTCTCGAAGGATGAAAGCTATCGCAAATGTTTGGACTGGCTTCCAAAATTTAGCCAATTGAAAGATGAGGTGCAAAAATTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

635

Amino Acids

70.82

Weight (kDa)

8.59

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 147	4e-07	PPR repeat family
PPR_2	PF13041	136 - 181	7.3e-09	PPR repeat family
PPR_1	PF12854	164 - 197	1.4e-08	PPR repeat
PPR_2	PF13041	168 - 217	2.2e-12	PPR repeat family
PPR_1	PF12854	200 - 231	5.1e-07	PPR repeat
PPR_1	PF12854	242 - 273	8.8e-14	PPR repeat
PPR_2	PF13041	244 - 291	7.7e-15	PPR repeat family
PPR	PF01535	247 - 276	3e-07	PPR repeat
PPR_3	PF13812	268 - 326	8.1e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	279 - 328	1.1e-12	PPR repeat family
PPR_1	PF12854	311 - 342	1.3e-08	PPR repeat
PPR_2	PF13041	314 - 362	3e-16	PPR repeat family
PPR	PF01535	317 - 347	5.5e-06	PPR repeat
PPR_3	PF13812	339 - 396	9.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	345 - 375	7.8e-13	PPR repeat
PPR_2	PF13041	352 - 398	2.7e-15	PPR repeat family
PPR	PF01535	352 - 382	6e-07	PPR repeat
PPR_1	PF12854	380 - 412	2e-09	PPR repeat
PPR_2	PF13041	384 - 433	1.3e-17	PPR repeat family
PPR	PF01535	387 - 417	3.2e-08	PPR repeat
PPR_3	PF13812	408 - 464	2.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	415 - 448	8.9e-11	PPR repeat
PPR_2	PF13041	419 - 468	5.5e-17	PPR repeat family
PPR	PF01535	422 - 451	9.6e-07	PPR repeat
PPR_long	PF17177	474 - 603	1.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	487 - 519	9.8e-09	PPR repeat
PPR_3	PF13812	487 - 534	8.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	492 - 538	5.3e-18	PPR repeat family
PPR	PF01535	494 - 523	6.5e-08	PPR repeat
PPR_3	PF13812	514 - 571	4.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	521 - 554	1.4e-10	PPR repeat
PPR	PF01535	528 - 558	1e-07	PPR repeat
PPR_2	PF13041	533 - 574	2.4e-13	PPR repeat family
PPR_3	PF13812	548 - 606	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	556 - 589	1.5e-09	PPR repeat
PPR_2	PF13041	560 - 608	2.2e-13	PPR repeat family
PPR	PF01535	563 - 592	1.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1272, 1583
Acc65I	GGTACC	1 cut(s)	1570
AccB1I	GGYRCC	1 cut(s)	1570
AciI	CCGC	3 cut(s)	708, 971, 1456
AclWI	GGATC	1 cut(s)	1545
AcsI	RAATTY	5 cut(s)	82, 828, 1479, 1865, 1895
AfaI	GTAC	3 cut(s)	628, 875, 1572
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	1566
Alw21I	GWGCWC	2 cut(s)	859, 1678
AlwI	GGATC	1 cut(s)	1545
AlwNI	CAGNNNCTG	1 cut(s)	1327
AoxI	GGCC	1 cut(s)	1564
ApeKI	GCWGC	3 cut(s)	23, 122, 1458
ApoI	RAATTY	5 cut(s)	82, 828, 1479, 1865, 1895
AseI	ATTAAT	1 cut(s)	1497
Asp700I	GAANNNNTTC	3 cut(s)	252, 831, 1752
Asp718I	GGTACC	1 cut(s)	1570
AspS9I	GGNCC	1 cut(s)	1564
AsuHPI	GGTGA	4 cut(s)	242, 751, 961, 1773
BanI	GGYRCC	1 cut(s)	1570
BanII	GRGCYC	1 cut(s)	1611
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	859, 1678
BbvI	GCAGC	3 cut(s)	10, 134, 1470
BccI	CCATC	4 cut(s)	452, 770, 913, 1070
BciT130I	CCWGG	1 cut(s)	1568
BciVI	GTATCC	2 cut(s)	1088, 1178
BclI	TGATCA	1 cut(s)	1176
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	1 cut(s)	663
BfuI	GTATCC	2 cut(s)	1088, 1178
BisI	GCNGC	5 cut(s)	24, 123, 972, 1456, 1459
BlsI	GCNGC	5 cut(s)	25, 124, 973, 1457, 1460
Bme1390I	CCNGG	1 cut(s)	1568
BmgT120I	GGNCC	1 cut(s)	1564
BmiI	GGNNCC	1 cut(s)	1572
BmrFI	CCNGG	1 cut(s)	1568
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	4 cut(s)	311, 1144, 1306, 1329
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	696
Bse1I	ACTGG	3 cut(s)	174, 1291, 1859
BseBI	CCWGG	1 cut(s)	1568
BseGI	GGATG	3 cut(s)	781, 1321, 1834
BseMII	CTCAG	1 cut(s)	1326
BseNI	ACTGG	3 cut(s)	174, 1291, 1859
BseXI	GCAGC	3 cut(s)	10, 134, 1470
BsgI	GTGCAG	1 cut(s)	667
BshFI	GGCC	1 cut(s)	1566
BshNI	GGYRCC	1 cut(s)	1570
BsiHKAI	GWGCWC	2 cut(s)	859, 1678
BsnI	GGCC	1 cut(s)	1566
Bsp1286I	GDGCHC	3 cut(s)	859, 1611, 1678
Bsp143I	GATC	3 cut(s)	1176, 1236, 1537
BspACI	CCGC	3 cut(s)	708, 971, 1456
BspANI	GGCC	1 cut(s)	1566
BspCNI	CTCAG	1 cut(s)	1327
BspLI	GGNNCC	1 cut(s)	1572
BspPI	GGATC	1 cut(s)	1545
BspQI	GCTCTTC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	1570
BsrI	ACTGG	3 cut(s)	174, 1291, 1859
BssMI	GATC	3 cut(s)	1176, 1236, 1537
Bst2UI	CCWGG	1 cut(s)	1568
Bst4CI	ACNGT	3 cut(s)	613, 725, 1261
Bst6I	CTCTTC	3 cut(s)	16, 294, 1300
BstC8I	GCNNGC	3 cut(s)	38, 655, 898
BstDEI	CTNAG	4 cut(s)	674, 696, 1335, 1469
BstF5I	GGATG	3 cut(s)	781, 1321, 1834
BstKTI	GATC	3 cut(s)	1179, 1239, 1540
BstMBI	GATC	3 cut(s)	1176, 1236, 1537
BstMWI	GCNNNNNNNGC	2 cut(s)	654, 902
BstNI	CCWGG	1 cut(s)	1568
BstSCI	CCNGG	1 cut(s)	1566
BstV1I	GCAGC	3 cut(s)	10, 134, 1470
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	1537
BstYI	RGATCY	1 cut(s)	1537
BsuI	GTATCC	2 cut(s)	1088, 1178
BsuRI	GGCC	1 cut(s)	1566
BtsCI	GGATG	3 cut(s)	781, 1321, 1834
BtsIMutI	CAGTG	3 cut(s)	181, 605, 1186
Cac8I	GCNNGC	3 cut(s)	38, 655, 898
CaiI	CAGNNNCTG	1 cut(s)	1327
Cfr13I	GGNCC	1 cut(s)	1564
Csp6I	GTAC	3 cut(s)	627, 874, 1571
CviQI	GTAC	3 cut(s)	627, 874, 1571
DdeI	CTNAG	4 cut(s)	674, 696, 1335, 1469
DpnI	GATC	3 cut(s)	1178, 1238, 1539
DpnII	GATC	3 cut(s)	1176, 1236, 1537
Eam1104I	CTCTTC	3 cut(s)	16, 294, 1300
EarI	CTCTTC	3 cut(s)	16, 294, 1300
EciI	GGCGGA	1 cut(s)	723
Eco24I	GRGCYC	1 cut(s)	1611
Eco32I	GATATC	1 cut(s)	1789
EcoO109I	RGGNCCY	1 cut(s)	1564
EcoRII	CCWGG	1 cut(s)	1566
EcoRV	GATATC	1 cut(s)	1789
EcoT38I	GRGCYC	1 cut(s)	1611
FalI	AAGNNNNNCTT	6 cut(s)	10, 42, 24, 56, 58, 90
FauNDI	CATATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	1176
Fnu4HI	GCNGC	5 cut(s)	24, 123, 972, 1456, 1459
FokI	GGATG	3 cut(s)	788, 1328, 1841
FriOI	GRGCYC	1 cut(s)	1611
Fsp4HI	GCNGC	5 cut(s)	24, 123, 972, 1456, 1459
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	5 cut(s)	24, 123, 972, 1456, 1459
HaeIII	GGCC	1 cut(s)	1566
HincII	GTYRAC	2 cut(s)	378, 1148
HindII	GTYRAC	2 cut(s)	378, 1148
HindIII	AAGCTT	4 cut(s)	38, 92, 1019, 1520
HinfI	GANTC	3 cut(s)	274, 862, 1600
HpaI	GTTAAC	1 cut(s)	378
HphI	GGTGA	4 cut(s)	242, 751, 961, 1773
Hpy166II	GTNNAC	6 cut(s)	256, 326, 378, 721, 1148, 1466
Hpy188I	TCNGA	4 cut(s)	861, 1336, 1350, 1768
Hpy188III	TCNNGA	6 cut(s)	15, 836, 1046, 1313, 1557, 1822
Hpy8I	GTNNAC	6 cut(s)	256, 326, 378, 721, 1148, 1466
HpyAV	CCTTC	4 cut(s)	978, 1613, 1655, 1819
HpyCH4III	ACNGT	3 cut(s)	613, 725, 1261
HpyCH4IV	ACGT	4 cut(s)	152, 380, 953, 1353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	654, 902
HpyF3I	CTNAG	4 cut(s)	674, 696, 1335, 1469
HpySE526I	ACGT	4 cut(s)	152, 380, 953, 1353
KpnI	GGTACC	1 cut(s)	1574
Ksp22I	TGATCA	1 cut(s)	1176
KspAI	GTTAAC	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	1176, 1236, 1537
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	1681
Lsp1109I	GCAGC	3 cut(s)	10, 134, 1470
LweI	GCATC	4 cut(s)	311, 1144, 1306, 1329
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	4 cut(s)	152, 380, 953, 1353
MaeIII	GTNAC	7 cut(s)	511, 678, 739, 949, 1264, 1687, 1779
MalI	GATC	3 cut(s)	1178, 1238, 1539
MboI	GATC	3 cut(s)	1176, 1236, 1537
MfeI	CAATTG	3 cut(s)	217, 427, 1874
MflI	RGATCY	1 cut(s)	1537
MhlI	GDGCHC	3 cut(s)	859, 1611, 1678
MmeI	TCCRAC	4 cut(s)	558, 1280, 1368, 1746
MroXI	GAANNNNTTC	3 cut(s)	252, 831, 1752
MseI	TTAA	8 cut(s)	377, 414, 531, 1101, 1296, 1485, 1497, 1695
MspA1I	CMGCKG	1 cut(s)	1461
MspR9I	CCNGG	1 cut(s)	1568
MunI	CAATTG	3 cut(s)	217, 427, 1874
MvaI	CCWGG	1 cut(s)	1568
MwoI	GCNNNNNNNGC	2 cut(s)	654, 902
NdeI	CATATG	1 cut(s)	279
NdeII	GATC	3 cut(s)	1176, 1236, 1537
NlaIV	GGNNCC	1 cut(s)	1572
NmuCI	GTSAC	5 cut(s)	511, 739, 949, 1687, 1779
PciSI	GCTCTTC	1 cut(s)	16
PdmI	GAANNNNTTC	3 cut(s)	252, 831, 1752
PfeI	GAWTC	3 cut(s)	274, 862, 1600
PkrI	GCNGC	5 cut(s)	25, 124, 973, 1457, 1460
PshBI	ATTAAT	1 cut(s)	1497
PsiI	TTATAA	2 cut(s)	1272, 1583
Psp6I	CCWGG	1 cut(s)	1566
PspGI	CCWGG	1 cut(s)	1566
PspN4I	GGNNCC	1 cut(s)	1572
PspPI	GGNCC	1 cut(s)	1564
PstNI	CAGNNNCTG	1 cut(s)	1327
PsuI	RGATCY	1 cut(s)	1537
PvuII	CAGCTG	1 cut(s)	1461
RsaI	GTAC	3 cut(s)	628, 875, 1572
RsaNI	GTAC	3 cut(s)	627, 874, 1571
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	8 cut(s)	377, 414, 531, 1101, 1296, 1485, 1497, 1695
SatI	GCNGC	5 cut(s)	24, 123, 972, 1456, 1459
Sau3AI	GATC	3 cut(s)	1176, 1236, 1537
Sau96I	GGNCC	1 cut(s)	1564
ScrFI	CCNGG	1 cut(s)	1568
SduI	GDGCHC	3 cut(s)	859, 1611, 1678
SfaNI	GCATC	4 cut(s)	311, 1144, 1306, 1329
SpeI	ACTAGT	1 cut(s)	662
SsiI	CCGC	3 cut(s)	708, 971, 1456
SspI	AATATT	3 cut(s)	418, 1196, 1222
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	1566
TaaI	ACNGT	3 cut(s)	613, 725, 1261
TaiI	ACGT	4 cut(s)	155, 383, 956, 1356
TaqI	TCGA	3 cut(s)	295, 1629, 1823
TatI	WGTACW	1 cut(s)	873
TauI	GCSGC	2 cut(s)	974, 1458
TfiI	GAWTC	3 cut(s)	274, 862, 1600
Tru1I	TTAA	8 cut(s)	377, 414, 531, 1101, 1296, 1485, 1497, 1695
Tru9I	TTAA	8 cut(s)	377, 414, 531, 1101, 1296, 1485, 1497, 1695
TscAI	CASTG	3 cut(s)	181, 605, 1186
TseFI	GTSAC	5 cut(s)	511, 739, 949, 1687, 1779
TseI	GCWGC	3 cut(s)	23, 122, 1458
Tsp45I	GTSAC	5 cut(s)	511, 739, 949, 1687, 1779
TspGWI	ACGGA	1 cut(s)	1531
TspRI	CASTG	3 cut(s)	181, 605, 1186
VspI	ATTAAT	1 cut(s)	1497
XapI	RAATTY	5 cut(s)	82, 828, 1479, 1865, 1895
XmnI	GAANNNNTTC	3 cut(s)	252, 831, 1752
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.