Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Forward (+)

17480155 .. 17483176

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGTCATGTTCAAAAGGCAGGCTTTCATCTTTATTCACGAACCCAGAAAGACCCACTTCTTCAAATTCAACCAAGCTTTCATCTTTATTCTCCACAAACCAAGTTACAGCTAGACCCACTTCTTCATATCCCACAACTTCAACAGAAACCCCAACTCCCAGTGTTCCAATCCAAACCCCTCTTGAAAATTTCCTCCAAACAAACTGCAAGTCAGGTAATTTCACTCTCAATGAAGCACTTCACTATTTTGACTGCATGATTCTTATGCAACCCGTTCCTCCAATGGCCTCATTCAATCGTATATTAGGTGGACTTGCGAAGAGTAAGCACTGCTCTCATGTTTTCTCATTTTGCATCAAGTTGACATCTTCTGGGTTATTGCCTGATTTCATTACGCTTAATATTTTGCTGAATTGCTTTTGTAATGTGAAACGGGTTTGTGATGCTTTGGTGGCTCTGGCAAGTATGATTAGGAGGGGTTATAAACCGAGTGCTGTTACTTTCACTTCTTTGGTTAAAGGGTTGTGTATGGAGGATAGGATTCATGAGGCAGTGAGGTTGTTGGAGAAAATGATTAAGCTTCAGTGTCAGCCTACTGTGATGACTTGTGGTACTTTGATTAATGGGCTGTGCAGGGCAGGAAAGACTAGCGTGGCACTTAGGTTACATGAAGATATGTCTAAGGGGAATGGCGGATTTGGTGTTTATTGTAAGCCGAATGTGGTTACTTATGGGATTATTATCGATAGGCTTTGTAAGGATGGGATGATAGATGAGGCAAAAGACCTTTTCTTAGAAATGAAATATAGAGGGATTCTTCCTGATGTGGTTGTGTATAGTGCTCTGATACATGGTTTGTACTATTATGAAAAGTGGGAAGCGGGTAAAGCTCTGTTGCATGAGATGGTGCATTGCGGTATCCAGCCTAATCTCGTGACGTTCAACGTGCTAATAGCGGCACTTTGCAGAAGGGGAAATGTGAAAGAGAGCAGTGATTTGCTAAAGCTTATGGTACACAGAGGCATTAGTCCTGATTTATTTACATACAACACTTTGATAGATGGCTTCTGTTTGGTGGGTTGCCTTAATGAAGCGAGAGAGCTGTTTCATACTATTTCAAGTAGAGGGTGTCAACCTGATGCTGTTAGCTACAATGTGTTGATCAATGGATACTGCAAGAATTGGAAGATAGAGGAAGCTGTCAATGTTTACGGGGAAATGATCTGCAAAGGAGTTATGCCAACTGTAGTAACTTATAATGCCTTATTAACTGGTCTGTTTAAGTTGGGAAGAGTTCAGGATGCACGGAAGCTGTTTGCTGAGATGCAAACTCAGAACGCACGGAAGCTCGAAATTGCTTGGGACCTATATCACAAAATGTCAGAAAAAGGCCTGGTACCAGATGTTATAACATATAGCATGATGATTCATGGGCTCTGTAGAGAAGGTCAACTCGAAAAGGCAAATGGTTTGTTTTTGGAAATGGAAGGAAAGGGTTGTGCTCCAAACATCGTCACTTATAATACCCTTATGCGTGGTTTCTGCGAAAATAATGACTTGGAAAAGGGTCATCTTCAAGAATCGTTTTCAGCTTTCTACCTACAAATGCAAGAAGGAGAGGAGATTTCAGATGTTCCTGCTGGTTCCTGGTTCAACTTTGAGAAAGTTCAACAGTATAATAAGCAACTTGCTTTGGCGGAAACCGAAGGGAAGAGAAAACGATATGATGATGATGCCGAGGCCTTCAGCTGTGCACCTTCCAAGAAGTTGAAGACCAAAAATGATCAAAAACCTTTCATAGAAGAAGAGCCTGCATCTGCTAGTCCTATCAGTGAGGAAGAAATCAGGGCTGTTTTTGAGAAAGAACAATCAATTTCCTTACAAGACCTTGTTGACCACTATCCAGGAAGAGTGGAATCGAATGAGGAGCTGAAGGCTTTAATAGCAGGGTTGAGGAGTATGTCTTACAAAATACTATATGTAAGAGACCGAAAGACGAAGAAACTAGTTACAATCTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

675

Amino Acids

75.6

Weight (kDa)

8.04

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	128 - 176	9.3e-11	PPR repeat family
PPR_1	PF12854	159 - 191	5.3e-10	PPR repeat
PPR_2	PF13041	163 - 212	1.6e-12	PPR repeat family
PPR_1	PF12854	196 - 227	2.3e-07	PPR repeat
PPR_1	PF12854	237 - 268	1e-11	PPR repeat
PPR_2	PF13041	239 - 286	4.5e-15	PPR repeat family
PPR	PF01535	242 - 272	1.2e-07	PPR repeat
PPR_3	PF13812	263 - 321	3.1e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	274 - 323	5.9e-12	PPR repeat family
PPR_1	PF12854	306 - 338	9.2e-09	PPR repeat
PPR_2	PF13041	309 - 357	1.7e-16	PPR repeat family
PPR	PF01535	312 - 342	4.2e-06	PPR repeat
PPR_3	PF13812	333 - 393	1.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	340 - 370	5.9e-11	PPR repeat
PPR	PF01535	347 - 377	2.7e-06	PPR repeat
PPR_2	PF13041	347 - 393	2.4e-15	PPR repeat family
PPR_1	PF12854	375 - 407	5.4e-11	PPR repeat
PPR_2	PF13041	379 - 428	3.9e-18	PPR repeat family
PPR	PF01535	382 - 412	1.2e-09	PPR repeat
PPR_1	PF12854	410 - 443	1.6e-09	PPR repeat
PPR_2	PF13041	414 - 446	3.8e-08	PPR repeat family
PPR	PF01535	417 - 444	6.5e-06	PPR repeat
PPR_2	PF13041	447 - 481	8.8e-11	PPR repeat family
PPR_long	PF17177	449 - 540	3.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	456 - 514	1.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	463 - 496	3.7e-12	PPR repeat
PPR	PF01535	470 - 500	1.8e-08	PPR repeat
PPR_2	PF13041	475 - 515	6.5e-15	PPR repeat family
PPR_1	PF12854	498 - 522	5.6e-08	PPR repeat
TFIIF_alpha	PF05793	522 - 596	1.7e-06	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	483, 1257, 1409, 1521
Acc65I	GGTACC	1 cut(s)	1396
AccB1I	GGYRCC	1 cut(s)	1396
AciI	CCGC	5 cut(s)	693, 881, 915, 956, 1697
AcsI	RAATTY	2 cut(s)	64, 187
AcuI	CTGAAG	3 cut(s)	566, 1729, 1952
AfaI	GTAC	4 cut(s)	613, 860, 1014, 1398
AhlI	ACTAGT	1 cut(s)	2005
AjnI	CCWGG	3 cut(s)	1392, 1646, 1903
Alw21I	GWGCWC	3 cut(s)	844, 1504, 1756
Alw26I	GTCTC	1 cut(s)	1980
Alw44I	GTGCAC	1 cut(s)	1752
AoxI	GGCC	3 cut(s)	285, 1390, 1740
ApaLI	GTGCAC	1 cut(s)	1752
ApoI	RAATTY	2 cut(s)	64, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AseI	ATTAAT	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	1396
AspS9I	GGNCC	1 cut(s)	1363
AvaII	GGWCC	1 cut(s)	1363
BaeGI	GKGCMC	1 cut(s)	1756
BanI	GGYRCC	1 cut(s)	1396
BanII	GRGCYC	1 cut(s)	1437
BauI	CACGAG	1 cut(s)	932
BbsI	GAAGAC	1 cut(s)	1778
Bbv12I	GWGCWC	3 cut(s)	844, 1504, 1756
BccI	CCATC	3 cut(s)	755, 898, 1055
BciT130I	CCWGG	3 cut(s)	1394, 1648, 1905
BciVI	GTATCC	2 cut(s)	929, 1163
BclI	TGATCA	2 cut(s)	1161, 1783
BcoDI	GTCTC	1 cut(s)	1980
BcuI	ACTAGT	1 cut(s)	2005
BfaI	CTAG	4 cut(s)	111, 648, 1821, 2006
BfmI	CTRYAG	2 cut(s)	1245, 1438
BfuI	GTATCC	2 cut(s)	929, 1163
BisI	GCNGC	1 cut(s)	957
BlsI	GCNGC	1 cut(s)	958
Bme1390I	CCNGG	3 cut(s)	1394, 1648, 1905
Bme18I	GGWCC	1 cut(s)	1363
BmgT120I	GGNCC	1 cut(s)	1363
BmiI	GGNNCC	3 cut(s)	1364, 1398, 1645
BmrFI	CCNGG	3 cut(s)	1394, 1648, 1905
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	7 cut(s)	363, 433, 1129, 1291, 1314, 1723, 1823
BmuI	ACTGGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	1778
Bsa29I	ATCGAT	1 cut(s)	744
BsaBI	GATNNNNATC	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	1980
BsaJI	CCNNGG	1 cut(s)	1737
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bse1I	ACTGG	2 cut(s)	159, 1276
Bse3DI	GCAATG	1 cut(s)	910
Bse8I	GATNNNNATC	1 cut(s)	740
BseBI	CCWGG	3 cut(s)	1394, 1648, 1905
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	1 cut(s)	1737
BseGI	GGATG	3 cut(s)	766, 771, 1306
BseJI	GATNNNNATC	1 cut(s)	740
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	1311, 1346
BseNI	ACTGG	2 cut(s)	159, 1276
BseRI	GAGGAG	3 cut(s)	1634, 1940, 1969
BseSI	GKGCMC	1 cut(s)	1756
BsgI	GTGCAG	1 cut(s)	652
BshFI	GGCC	3 cut(s)	287, 1392, 1742
BshNI	GGYRCC	1 cut(s)	1396
BshVI	ATCGAT	1 cut(s)	744
BsiHKAI	GWGCWC	3 cut(s)	844, 1504, 1756
BslFI	GGGAC	1 cut(s)	1376
BsmAI	GTCTC	1 cut(s)	1980
BsmFI	GGGAC	1 cut(s)	1376
BsnI	GGCC	3 cut(s)	287, 1392, 1742
Bso31I	GGTCTC	1 cut(s)	1980
Bsp1286I	GDGCHC	4 cut(s)	844, 1437, 1504, 1756
Bsp143I	GATC	3 cut(s)	1161, 1221, 1783
BspACI	CCGC	5 cut(s)	693, 881, 915, 956, 1697
BspANI	GGCC	3 cut(s)	287, 1392, 1742
BspCNI	CTCAG	2 cut(s)	1312, 1345
BspDI	ATCGAT	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	1364, 1398, 1645
BspQI	GCTCTTC	1 cut(s)	1800
BspT107I	GGYRCC	1 cut(s)	1396
BspTNI	GGTCTC	1 cut(s)	1980
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	159, 1276
BssECI	CCNNGG	1 cut(s)	1737
BssMI	GATC	3 cut(s)	1161, 1221, 1783
BssSI	CACGAG	1 cut(s)	932
Bst2BI	CACGAG	1 cut(s)	932
Bst2UI	CCWGG	3 cut(s)	1394, 1648, 1905
Bst4CI	ACNGT	3 cut(s)	598, 1246, 1674
Bst6I	CTCTTC	5 cut(s)	314, 1285, 1706, 1800, 1903
BstC8I	GCNNGC	2 cut(s)	20, 1812
BstDEI	CTNAG	5 cut(s)	659, 681, 793, 1320, 1332
BstF5I	GGATG	3 cut(s)	766, 771, 1306
BstKTI	GATC	3 cut(s)	1164, 1224, 1786
BstMAI	GTCTC	1 cut(s)	1980
BstMBI	GATC	3 cut(s)	1161, 1221, 1783
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 887, 1943
BstNI	CCWGG	3 cut(s)	1394, 1648, 1905
BstSCI	CCNGG	3 cut(s)	1392, 1646, 1903
BstSFI	CTRYAG	2 cut(s)	1245, 1438
BstSLI	GKGCMC	1 cut(s)	1756
BstV2I	GAAGAC	1 cut(s)	1778
Bsu15I	ATCGAT	1 cut(s)	744
BsuI	GTATCC	2 cut(s)	929, 1163
BsuRI	GGCC	3 cut(s)	287, 1392, 1742
BsuTUI	ATCGAT	1 cut(s)	744
BtsCI	GGATG	3 cut(s)	766, 771, 1306
BtsI	GCAGTG	3 cut(s)	328, 558, 997
BtsIMutI	CAGTG	6 cut(s)	166, 328, 558, 590, 997, 1837
Cac8I	GCNNGC	2 cut(s)	20, 1812
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	1363
ClaI	ATCGAT	1 cut(s)	744
Csp6I	GTAC	4 cut(s)	612, 859, 1013, 1397
CviAII	CATG	9 cut(s)	6, 256, 338, 545, 668, 851, 899, 1420, 1430
CviQI	GTAC	4 cut(s)	612, 859, 1013, 1397
DdeI	CTNAG	5 cut(s)	659, 681, 793, 1320, 1332
DpnI	GATC	3 cut(s)	1163, 1223, 1785
DpnII	GATC	3 cut(s)	1161, 1221, 1783
Eam1104I	CTCTTC	5 cut(s)	314, 1285, 1706, 1800, 1903
EarI	CTCTTC	5 cut(s)	314, 1285, 1706, 1800, 1903
EciI	GGCGGA	2 cut(s)	708, 1712
Eco147I	AGGCCT	2 cut(s)	1392, 1742
Eco24I	GRGCYC	1 cut(s)	1437
Eco31I	GGTCTC	1 cut(s)	1980
Eco47I	GGWCC	1 cut(s)	1363
Eco57I	CTGAAG	3 cut(s)	566, 1729, 1952
EcoO109I	RGGNCCY	1 cut(s)	1363
EcoRII	CCWGG	3 cut(s)	1392, 1646, 1903
EcoT38I	GRGCYC	1 cut(s)	1437
FaeI	CATG	9 cut(s)	9, 259, 341, 548, 671, 854, 902, 1423, 1433
FalI	AAGNNNNNCTT	3 cut(s)	38, 40, 72
FaqI	GGGAC	1 cut(s)	1376
FatI	CATG	9 cut(s)	5, 255, 337, 544, 667, 850, 898, 1419, 1429
FauI	CCCGC	1 cut(s)	874
FbaI	TGATCA	2 cut(s)	1161, 1783
Fnu4HI	GCNGC	1 cut(s)	957
FokI	GGATG	3 cut(s)	773, 778, 1313
FriOI	GRGCYC	1 cut(s)	1437
Fsp4HI	GCNGC	1 cut(s)	957
FspBI	CTAG	4 cut(s)	111, 648, 1821, 2006
GluI	GCNGC	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	287, 1392, 1742
Hin1II	CATG	9 cut(s)	9, 259, 341, 548, 671, 854, 902, 1423, 1433
HincII	GTYRAC	4 cut(s)	363, 1133, 1451, 1894
HindII	GTYRAC	4 cut(s)	363, 1133, 1451, 1894
HindIII	AAGCTT	3 cut(s)	74, 578, 1004
HinfI	GANTC	6 cut(s)	259, 541, 814, 1426, 1580, 1916
Hpy166II	GTNNAC	8 cut(s)	311, 363, 1015, 1133, 1210, 1451, 1754, 1894
Hpy188I	TCNGA	4 cut(s)	846, 1335, 1384, 1630
Hpy188III	TCNNGA	8 cut(s)	37, 182, 545, 821, 934, 1031, 1298, 1577
Hpy8I	GTNNAC	8 cut(s)	311, 363, 1015, 1133, 1210, 1451, 1754, 1894
HpyAV	CCTTC	8 cut(s)	963, 1439, 1481, 1607, 1700, 1753, 1767, 1927
HpyCH4III	ACNGT	3 cut(s)	598, 1246, 1674
HpyCH4IV	ACGT	2 cut(s)	938, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 887, 1943
HpyF3I	CTNAG	5 cut(s)	659, 681, 793, 1320, 1332
HpySE526I	ACGT	2 cut(s)	938, 945
Hsp92II	CATG	9 cut(s)	9, 259, 341, 548, 671, 854, 902, 1423, 1433
KpnI	GGTACC	1 cut(s)	1400
Ksp22I	TGATCA	2 cut(s)	1161, 1783
Kzo9I	GATC	3 cut(s)	1161, 1221, 1783
LguI	GCTCTTC	1 cut(s)	1800
LmnI	GCTCC	2 cut(s)	1507, 1927
LweI	GCATC	7 cut(s)	363, 433, 1129, 1291, 1314, 1723, 1823
MaeI	CTAG	4 cut(s)	111, 648, 1821, 2006
MaeII	ACGT	2 cut(s)	938, 945
MaeIII	GTNAC	8 cut(s)	103, 496, 663, 724, 934, 1249, 1513, 2008
MalI	GATC	3 cut(s)	1163, 1223, 1785
MboI	GATC	3 cut(s)	1161, 1221, 1783
MhlI	GDGCHC	4 cut(s)	844, 1437, 1504, 1756
MluCI	AATT	7 cut(s)	64, 187, 217, 412, 1180, 1353, 1872
MmeI	TCCRAC	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	8 cut(s)	399, 516, 576, 621, 1086, 1268, 1281, 1940
MspA1I	CMGCKG	1 cut(s)	1749
MspR9I	CCNGG	3 cut(s)	1394, 1648, 1905
MvaI	CCWGG	3 cut(s)	1394, 1648, 1905
MwoI	GCNNNNNNNGC	3 cut(s)	452, 887, 1943
NdeII	GATC	3 cut(s)	1161, 1221, 1783
NlaIII	CATG	9 cut(s)	9, 259, 341, 548, 671, 854, 902, 1423, 1433
NlaIV	GGNNCC	3 cut(s)	1364, 1398, 1645
NmeAIII	GCCGAG	1 cut(s)	1762
NmuCI	GTSAC	2 cut(s)	934, 1513
PagI	TCATGA	1 cut(s)	544
PceI	AGGCCT	2 cut(s)	1392, 1742
PciSI	GCTCTTC	1 cut(s)	1800
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	6 cut(s)	259, 541, 814, 1426, 1580, 1916
PfoI	TCCNGGA	1 cut(s)	1903
PkrI	GCNGC	1 cut(s)	958
PpuMI	RGGWCCY	1 cut(s)	1363
PshBI	ATTAAT	1 cut(s)	621
PsiI	TTATAA	4 cut(s)	483, 1257, 1409, 1521
Psp5II	RGGWCCY	1 cut(s)	1363
Psp6I	CCWGG	3 cut(s)	1392, 1646, 1903
PspGI	CCWGG	3 cut(s)	1392, 1646, 1903
PspN4I	GGNNCC	3 cut(s)	1364, 1398, 1645
PspPI	GGNCC	1 cut(s)	1363
PspPPI	RGGWCCY	1 cut(s)	1363
PvuII	CAGCTG	1 cut(s)	1749
RsaI	GTAC	4 cut(s)	613, 860, 1014, 1398
RsaNI	GTAC	4 cut(s)	612, 859, 1013, 1397
SapI	GCTCTTC	1 cut(s)	1800
SaqAI	TTAA	8 cut(s)	399, 516, 576, 621, 1086, 1268, 1281, 1940
SatI	GCNGC	1 cut(s)	957
Sau3AI	GATC	3 cut(s)	1161, 1221, 1783
Sau96I	GGNCC	1 cut(s)	1363
ScrFI	CCNGG	3 cut(s)	1394, 1648, 1905
SduI	GDGCHC	4 cut(s)	844, 1437, 1504, 1756
SfaNI	GCATC	7 cut(s)	363, 433, 1129, 1291, 1314, 1723, 1823
SfcI	CTRYAG	2 cut(s)	1245, 1438
SinI	GGWCC	1 cut(s)	1363
SpeI	ACTAGT	1 cut(s)	2005
Sse9I	AATT	7 cut(s)	64, 187, 217, 412, 1180, 1353, 1872
SseBI	AGGCCT	2 cut(s)	1392, 1742
SsiI	CCGC	5 cut(s)	693, 881, 915, 956, 1697
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	4 cut(s)	111, 648, 1821, 2006
StuI	AGGCCT	2 cut(s)	1392, 1742
StyD4I	CCNGG	3 cut(s)	1392, 1646, 1903
TaaI	ACNGT	3 cut(s)	598, 1246, 1674
TaiI	ACGT	2 cut(s)	941, 948
TaqI	TCGA	4 cut(s)	744, 1350, 1455, 1919
TaqII	GACCGA	1 cut(s)	2004
TasI	AATT	7 cut(s)	64, 187, 217, 412, 1180, 1353, 1872
TatI	WGTACW	1 cut(s)	858
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	6 cut(s)	259, 541, 814, 1426, 1580, 1916
Tru1I	TTAA	8 cut(s)	399, 516, 576, 621, 1086, 1268, 1281, 1940
Tru9I	TTAA	8 cut(s)	399, 516, 576, 621, 1086, 1268, 1281, 1940
TscAI	CASTG	6 cut(s)	166, 335, 558, 590, 997, 1837
TseFI	GTSAC	2 cut(s)	934, 1513
Tsp45I	GTSAC	2 cut(s)	934, 1513
TspGWI	ACGGA	2 cut(s)	1321, 1357
TspRI	CASTG	6 cut(s)	166, 335, 558, 590, 997, 1837
VneI	GTGCAC	1 cut(s)	1752
VpaK11BI	GGWCC	1 cut(s)	1363
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	2 cut(s)	64, 187
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	4 cut(s)	111, 648, 1821, 2006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.