Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g22260 |
| malus_domestica | MD05G1203800.v1.1 |
| prunus_persica | Prupe.8G230100_v2.0.a1 |
| pyrus_communis | pycom05g19020 |
| rosa_chinensis | RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221 |
| rosa_laevigata | RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325 |
| rosa_multiflora | Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011 |
| rosa_roxburghii | Rroxscaffold_7G00179440 Rroxscaffold_7G00179500 |
| rosa_rugosa | Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000 |
| rosa_samantha | Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100 |
| rosa_wichuraiana | Rw6G027020 Rw6G027040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 200 |
| AfaI | GTAC | 1 cut(s) | 193 |
| AgsI | TTSAA | 3 cut(s) | 127, 142, 210 |
| AluBI | AGCT | 3 cut(s) | 75, 131, 178 |
| AluI | AGCT | 3 cut(s) | 75, 131, 178 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 1 cut(s) | 12 |
| BbvCI | CCTCAGC | 1 cut(s) | 132 |
| BccI | CCATC | 1 cut(s) | 224 |
| BmcAI | AGTACT | 1 cut(s) | 193 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| Bse1I | ACTGG | 2 cut(s) | 98, 114 |
| BseGI | GGATG | 2 cut(s) | 73, 216 |
| BseMII | CTCAG | 1 cut(s) | 123 |
| BseNI | ACTGG | 2 cut(s) | 98, 114 |
| BsmI | GAATGC | 1 cut(s) | 137 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BsrI | ACTGG | 2 cut(s) | 98, 114 |
| Bst4CI | ACNGT | 1 cut(s) | 191 |
| BstDEI | CTNAG | 1 cut(s) | 132 |
| BstF5I | GGATG | 2 cut(s) | 73, 216 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 184 |
| BtsCI | GGATG | 2 cut(s) | 73, 216 |
| Csp6I | GTAC | 1 cut(s) | 192 |
| CviJI | RGCY | 5 cut(s) | 75, 97, 120, 131, 178 |
| CviKI_1 | RGCY | 5 cut(s) | 75, 97, 120, 131, 178 |
| CviQI | GTAC | 1 cut(s) | 192 |
| DdeI | CTNAG | 1 cut(s) | 132 |
| FaiI | YATR | 3 cut(s) | 50, 158, 172 |
| FokI | GGATG | 2 cut(s) | 80, 203 |
| HindIII | AAGCTT | 1 cut(s) | 176 |
| HphI | GGTGA | 1 cut(s) | 12 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 81 |
| Hpy188III | TCNNGA | 1 cut(s) | 210 |
| HpyCH4III | ACNGT | 1 cut(s) | 191 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 184 |
| HpyF3I | CTNAG | 1 cut(s) | 132 |
| LpnPI | CCDG | 4 cut(s) | 36, 79, 123, 127 |
| MaeIII | GTNAC | 1 cut(s) | 18 |
| MfeI | CAATTG | 1 cut(s) | 122 |
| MluCI | AATT | 2 cut(s) | 122, 200 |
| MmeI | TCCRAC | 1 cut(s) | 125 |
| MnlI | CCTC | 3 cut(s) | 49, 127, 176 |
| MseI | TTAA | 1 cut(s) | 223 |
| MunI | CAATTG | 1 cut(s) | 122 |
| Mva1269I | GAATGC | 1 cut(s) | 137 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 184 |
| NmuCI | GTSAC | 1 cut(s) | 18 |
| PctI | GAATGC | 1 cut(s) | 137 |
| RsaI | GTAC | 1 cut(s) | 193 |
| RsaNI | GTAC | 1 cut(s) | 192 |
| SaqAI | TTAA | 1 cut(s) | 223 |
| ScaI | AGTACT | 1 cut(s) | 193 |
| SetI | ASST | 5 cut(s) | 41, 77, 133, 168, 180 |
| SgeI | CNNG | 8 cut(s) | 35, 67, 106, 122, 126, 187, 191, 196 |
| Sse9I | AATT | 2 cut(s) | 122, 200 |
| TaaI | ACNGT | 1 cut(s) | 191 |
| TasI | AATT | 2 cut(s) | 122, 200 |
| TatI | WGTACW | 1 cut(s) | 191 |
| Tru1I | TTAA | 1 cut(s) | 223 |
| Tru9I | TTAA | 1 cut(s) | 223 |
| TseFI | GTSAC | 1 cut(s) | 18 |
| Tsp45I | GTSAC | 1 cut(s) | 18 |
| TspDTI | ATGAA | 1 cut(s) | 84 |
| XapI | RAATTY | 1 cut(s) | 200 |
| ZrmI | AGTACT | 1 cut(s) | 193 |