Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Forward (+)

47216162 .. 47219965

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACGATTCGATTGTCATGTTCAAAAGGCAAGCTTTCATCTTTATTCAAAAACCCAGAAAGACCAACTTCTTCAAATTCAACCAAGCTTTCATCTTTATTTTTCGCAAACCAAGTTACAGCTAAACCCACAACCTCAACAGAAACACCAATTCCCAGTGTTCCAATCCAAACCCCACTTGAAAATTTCCTCCAAACAAACTGCAAGTCAGGTAATTTCACTCTCAATGAAGCACTTCACTATATTGACCGCATGATTCTTATGCAACCCGTTCCTCCAATGGCCGCATTCAATCGTATATTAGGTGGACTTGCGAAGAGTAAGCACTACTCTCATGTTTTCTCATTTTGCATCAAGTTAACATCTTCTGGGTTATTGCCTCATTTCATTACGCTTAATATTTTGCTGAATTGCTGTTGTGATGTGAAACGGGTTTGTGATGGTTTGGTAGCTCTGGGAAGGTTGTGTATGGAGGATAGGATTGATGAGGCAGTGAGGGCAGGAAAGACTAGCGTGGCACCTAGGTTACATGAAGATATGTCTAAGGGGAATTACGATTATACCCTTCTACACCCAGTCTCCTTTCTGAACTCTGACCCTCTCTTCTTGAGTTCTCTCTCTCGGCTCTCCGTCCGCCACTCTCTTGGCTCTCCCAGCTCGATACCAGCTCCTCCACCACTCTTCGTCTCAGAAATCCGCTTTCGCCAGCGAGCCCGACTATCTCAAAGAGGTTCGCCGTCGCCGAAGCCCGACGATCTCAGAGAGGGCTCTTGGATCTTCGATTCCACATGGTTTCGATCTAATAGTCAATTAGCTCCAGAAGTTCGACACCAACCACGCAAAGCTTCAGAAGTTCGCCGTCGCCGAAGCCCGACGATCTCAGAAAGGGCTCTCGGATCTTCGATTCCACATGGTTTCGATCTAATAGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

312

Amino Acids

34.63

Weight (kDa)

9.72

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AciI	CCGC	4 cut(s)	250, 285, 634, 697
AclWI	GGATC	2 cut(s)	782, 904
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	76, 184
AcuI	CTGAAG	1 cut(s)	831
AgsI	TTSAA	6 cut(s)	24, 49, 75, 81, 182, 292
AluBI	AGCT	8 cut(s)	34, 88, 122, 452, 657, 668, 815, 845
AluI	AGCT	8 cut(s)	34, 88, 122, 452, 657, 668, 815, 845
Alw26I	GTCTC	2 cut(s)	583, 691
AlwI	GGATC	2 cut(s)	782, 904
AoxI	GGCC	1 cut(s)	282
ApoI	RAATTY	2 cut(s)	76, 184
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	234
AspA2I	CCTAGG	1 cut(s)	521
AvrII	CCTAGG	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	3 cut(s)	715, 770, 892
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	2 cut(s)	721, 843
BcoDI	GTCTC	2 cut(s)	583, 691
BfaI	CTAG	2 cut(s)	510, 522
BisI	GCNGC	1 cut(s)	285
BlnI	CCTAGG	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	519
BmrI	ACTGGG	2 cut(s)	150, 569
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	2 cut(s)	150, 569
BpmI	CTGGAG	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bse1I	ACTGG	2 cut(s)	156, 575
BseDI	CCNNGG	1 cut(s)	521
BseMII	CTCAG	3 cut(s)	702, 772, 894
BseNI	ACTGG	2 cut(s)	156, 575
BseRI	GAGGAG	1 cut(s)	660
BseYI	CCCAGC	1 cut(s)	653
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	583, 691
BsmBI	CGTCTC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	715, 770, 892
Bsp143I	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
BspACI	CCGC	4 cut(s)	250, 285, 634, 697
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	701, 771, 893
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	782, 904
BspT107I	GGYRCC	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	156, 575
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
BssT1I	CCWWGG	1 cut(s)	521
Bst6I	CTCTTC	3 cut(s)	311, 608, 686
BstC8I	GCNNGC	3 cut(s)	32, 707, 711
BstDEI	CTNAG	4 cut(s)	543, 688, 758, 880
BstKTI	GATC	6 cut(s)	757, 777, 800, 879, 899, 922
BstMAI	GTCTC	2 cut(s)	583, 691
BstMBI	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 654
BstX2I	RGATCY	2 cut(s)	774, 896
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstYI	RGATCY	2 cut(s)	774, 896
BsuRI	GGCC	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	163, 498
Cac8I	GCNNGC	3 cut(s)	32, 707, 711
CviAII	CATG	6 cut(s)	18, 253, 335, 530, 789, 911
DdeI	CTNAG	4 cut(s)	543, 688, 758, 880
DpnI	GATC	6 cut(s)	756, 776, 799, 878, 898, 921
DpnII	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	311, 608, 686
EarI	CTCTTC	3 cut(s)	311, 608, 686
EciI	GGCGGA	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	521
Eco24I	GRGCYC	3 cut(s)	715, 770, 892
Eco57I	CTGAAG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	3 cut(s)	715, 770, 892
ErhI	CCWWGG	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	691
FaeI	CATG	6 cut(s)	21, 256, 338, 533, 792, 914
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 52, 84
FatI	CATG	6 cut(s)	17, 252, 334, 529, 788, 910
Fnu4HI	GCNGC	1 cut(s)	285
FriOI	GRGCYC	3 cut(s)	715, 770, 892
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	510, 522
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	657
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	284
Hin1II	CATG	6 cut(s)	21, 256, 338, 533, 792, 914
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	3 cut(s)	32, 86, 843
HinfI	GANTC	4 cut(s)	7, 256, 782, 904
HpaI	GTTAAC	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	308, 360
Hpy188I	TCNGA	7 cut(s)	588, 595, 691, 761, 850, 883, 896
Hpy188III	TCNNGA	2 cut(s)	607, 818
Hpy8I	GTNNAC	2 cut(s)	308, 360
Hpy99I	CGWCG	4 cut(s)	742, 755, 864, 877
HpyAV	CCTTC	2 cut(s)	453, 575
HpyCH4V	TGCA	3 cut(s)	204, 265, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 654
HpyF3I	CTNAG	4 cut(s)	543, 688, 758, 880
Hsp92II	CATG	6 cut(s)	21, 256, 338, 533, 792, 914
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
LmnI	GCTCC	2 cut(s)	673, 820
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	510, 522
MaeIII	GTNAC	2 cut(s)	115, 525
MalI	GATC	6 cut(s)	756, 776, 799, 878, 898, 921
MboI	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
MboII	GAAGA	8 cut(s)	63, 328, 357, 545, 595, 673, 769, 891
MflI	RGATCY	2 cut(s)	774, 896
MhlI	GDGCHC	3 cut(s)	715, 770, 892
MluCI	AATT	7 cut(s)	76, 150, 184, 214, 409, 550, 809
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	359, 396
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	497, 654
NdeII	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
NlaIII	CATG	6 cut(s)	21, 256, 338, 533, 792, 914
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	2 cut(s)	740, 862
PctI	GAATGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	7, 256, 782, 904
PkrI	GCNGC	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	519
PsuI	RGATCY	2 cut(s)	774, 896
SaqAI	TTAA	2 cut(s)	359, 396
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	6 cut(s)	754, 774, 797, 876, 896, 919
SduI	GDGCHC	3 cut(s)	715, 770, 892
SfaNI	GCATC	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
Sse9I	AATT	7 cut(s)	76, 150, 184, 214, 409, 550, 809
SsiI	CCGC	4 cut(s)	250, 285, 634, 697
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	2 cut(s)	510, 522
StyI	CCWWGG	1 cut(s)	521
TaqI	TCGA	8 cut(s)	10, 659, 780, 796, 826, 902, 918, 930
TasI	AATT	7 cut(s)	76, 150, 184, 214, 409, 550, 809
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	4 cut(s)	7, 256, 782, 904
Tru1I	TTAA	2 cut(s)	359, 396
Tru9I	TTAA	2 cut(s)	359, 396
TscAI	CASTG	2 cut(s)	163, 498
TspDTI	ATGAA	5 cut(s)	27, 81, 243, 376, 546
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	2 cut(s)	163, 498
XapI	RAATTY	2 cut(s)	76, 184
XmaJI	CCTAGG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	510, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.