Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Reverse (-)

52723 .. 53784

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgtcatcctctgcaagaactgctgcttcaaaatgcaagttaccacctttatccacgaacccagaaagacccacatcttcaaattcccacagctcaaccaagctttcatctttcttcacaaaccaagctagtagtaataccgctatacccacttcttcaaatcccaaaacttcaccaaaaaaccgaattcctagagttccaatccaaaccccacttgagaagttcctccaagcaaactgtaagtctggtaacatcactctcagtgaagcgcttgattattttgaccacatgattcatatgcgacctcctcctccaatgtcattattcaatcgtttattaggtggacttgtcaagagtaagcattactctcatgttttctcattttgtaataagttgacagcttctgggttattgcccaatttgattacacttaatattttggttaactgcctttgtaatatgaaccgggtttgtgatggttttgtggtcatgggaagtatgattaggaagggttatagaccaactactgtgacttttacatctttggttaaagggctgtgtatggagaataggattgatgaggcaaacaagttgtttgagaaaatgatcaagttcaggtgtcagcctagtgtgatttgttatggtactttgattaatgggttgtgccgaacgggcaagacagatgttgcacttaagttacatgaagaaatgaatagtgggaatggtgttaggtttaggccgaatactgtgacttttacatctttgatccagggtttgtgtgtggaggataggatagatgaggcaaccagtttgtttgagaaaatgaagaagttgcggtgtcatcctagcgtgattacatacggtactttgattaatgggttctgcagagcaggcaagacagatgttgcacttagattacatgaagaaatggccaatgagaatggtgttgattgtaagccaaattcagttacttacgggattattattgatcggctttgtaaagatgggatgatagataaggcaacagagcttttcctagaaatgaaaaatagagggatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

353

Amino Acids

39.16

Weight (kDa)

9.35

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	141, 835
AclWI	GGATC	1 cut(s)	760
AcoI	YGGCCR	1 cut(s)	930
AcsI	RAATTY	3 cut(s)	82, 186, 961
AfaI	GTAC	2 cut(s)	646, 865
AfeI	AGCGCT	1 cut(s)	270
AflII	CTTAAG	1 cut(s)	692
AgsI	TTSAA	4 cut(s)	30, 81, 159, 328
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	5 cut(s)	93, 103, 128, 401, 1030
AluI	AGCT	5 cut(s)	93, 103, 128, 401, 1030
AlwI	GGATC	1 cut(s)	760
AlwNI	CAGNNNCTG	1 cut(s)	404
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	2 cut(s)	737, 930
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	3 cut(s)	82, 186, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AseI	ATTAAT	2 cut(s)	654, 873
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	932
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	470, 998
BciT130I	CCWGG	1 cut(s)	770
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	467
BfaI	CTAG	5 cut(s)	129, 192, 627, 846, 1037
BfmI	CTRYAG	1 cut(s)	883
BfoI	RGCGCY	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	692
BglI	GCCNNNNNGGC	1 cut(s)	672
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	467, 770
BmrFI	CCNGG	2 cut(s)	467, 770
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	1 cut(s)	769
BseGI	GGATG	3 cut(s)	5, 841, 1014
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	807
BseRI	GAGGAG	2 cut(s)	297, 300
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	739, 932
BsiSI	CCGG	1 cut(s)	466
BsnI	GGCC	2 cut(s)	739, 932
Bsp143I	GATC	3 cut(s)	606, 765, 988
BspACI	CCGC	2 cut(s)	141, 835
BspANI	GGCC	2 cut(s)	739, 932
BspCNI	CTCAG	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	887
BspPI	GGATC	1 cut(s)	760
BspTI	CTTAAG	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	807
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	3 cut(s)	606, 765, 988
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	4 cut(s)	239, 529, 748, 863
BstAFI	CTTAAG	1 cut(s)	692
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	892
BstDEI	CTNAG	2 cut(s)	260, 911
BstF5I	GGATG	3 cut(s)	5, 841, 1014
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	609, 768, 991
BstMBI	GATC	3 cut(s)	606, 765, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 672, 891
BstNI	CCWGG	1 cut(s)	770
BstSCI	CCNGG	2 cut(s)	465, 768
BstSFI	CTRYAG	1 cut(s)	883
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	739, 932
BtsCI	GGATG	3 cut(s)	5, 841, 1014
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	892
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	645, 864
CviAII	CATG	5 cut(s)	289, 371, 490, 701, 920
CviQI	GTAC	2 cut(s)	645, 864
DdeI	CTNAG	2 cut(s)	260, 911
DpnI	GATC	3 cut(s)	608, 767, 990
DpnII	GATC	3 cut(s)	606, 765, 988
EaeI	YGGCCR	1 cut(s)	930
Eco47III	AGCGCT	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	768
FaeI	CATG	5 cut(s)	292, 374, 493, 704, 923
FatI	CATG	5 cut(s)	288, 370, 489, 700, 919
FauNDI	CATATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	828, 1021
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	5 cut(s)	129, 192, 627, 846, 1037
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	739, 932
HapII	CCGG	1 cut(s)	466
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	5 cut(s)	292, 374, 493, 704, 923
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	2 cut(s)	396, 445
HindII	GTYRAC	2 cut(s)	396, 445
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	292
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	3 cut(s)	344, 396, 445
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	344, 396, 445
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	4 cut(s)	239, 529, 748, 863
HpyCH4V	TGCA	5 cut(s)	14, 36, 689, 885, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 672, 891
HpyF3I	CTNAG	2 cut(s)	260, 911
Hsp92II	CATG	5 cut(s)	292, 374, 493, 704, 923
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	606
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	606, 765, 988
LpnPI	CCDG	9 cut(s)	75, 231, 390, 479, 601, 755, 782, 820, 876
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	5 cut(s)	129, 192, 627, 846, 1037
MaeIII	GTNAC	6 cut(s)	39, 248, 529, 696, 748, 967
MalI	GATC	3 cut(s)	608, 767, 990
MboI	GATC	3 cut(s)	606, 765, 988
MboII	GAAGA	6 cut(s)	69, 106, 147, 716, 838, 935
MlsI	TGGCCA	1 cut(s)	932
MluCI	AATT	4 cut(s)	82, 186, 418, 961
MluNI	TGGCCA	1 cut(s)	932
MnlI	CCTC	9 cut(s)	19, 236, 315, 318, 321, 574, 778, 793, 1046
Mox20I	TGGCCA	1 cut(s)	932
MscI	TGGCCA	1 cut(s)	932
MseI	TTAA	6 cut(s)	432, 444, 549, 654, 693, 873
Msp20I	TGGCCA	1 cut(s)	932
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	467, 770
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	3 cut(s)	20, 672, 891
NciI	CCSGG	1 cut(s)	467
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	3 cut(s)	606, 765, 988
NlaIII	CATG	5 cut(s)	292, 374, 493, 704, 923
NmuCI	GTSAC	2 cut(s)	529, 748
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	25
PshBI	ATTAAT	2 cut(s)	654, 873
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PstI	CTGCAG	1 cut(s)	887
PstNI	CAGNNNCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	646, 865
RsaNI	GTAC	2 cut(s)	645, 864
SaqAI	TTAA	6 cut(s)	432, 444, 549, 654, 693, 873
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	606, 765, 988
ScrFI	CCNGG	2 cut(s)	467, 770
SfcI	CTRYAG	1 cut(s)	883
SmlI	CTYRAG	2 cut(s)	215, 692
SmoI	CTYRAG	2 cut(s)	215, 692
Sse9I	AATT	4 cut(s)	82, 186, 418, 961
SsiI	CCGC	2 cut(s)	141, 835
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	5 cut(s)	129, 192, 627, 846, 1037
StyD4I	CCNGG	2 cut(s)	465, 768
TaaI	ACNGT	4 cut(s)	239, 529, 748, 863
TasI	AATT	4 cut(s)	82, 186, 418, 961
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	6 cut(s)	432, 444, 549, 654, 693, 873
Tru9I	TTAA	6 cut(s)	432, 444, 549, 654, 693, 873
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	529, 748
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	2 cut(s)	529, 748
TspDTI	ATGAA	8 cut(s)	96, 284, 476, 717, 725, 839, 936, 1058
TspRI	CASTG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	692
VspI	ATTAAT	2 cut(s)	654, 873
XapI	RAATTY	3 cut(s)	82, 186, 961
XspI	CTAG	5 cut(s)	129, 192, 627, 846, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.