Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g22260 |
| malus_domestica | MD05G1203800.v1.1 |
| prunus_persica | Prupe.8G230100_v2.0.a1 |
| pyrus_communis | pycom05g19020 |
| rosa_chinensis | RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221 |
| rosa_laevigata | RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325 |
| rosa_multiflora | Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011 |
| rosa_roxburghii | Rroxscaffold_7G00179440 Rroxscaffold_7G00179500 |
| rosa_rugosa | Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000 |
| rosa_samantha | Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100 |
| rosa_wichuraiana | Rw6G027020 Rw6G027040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1580, 1692 |
| AccB1I | GGYRCC | 1 cut(s) | 1567 |
| AciI | CCGC | 2 cut(s) | 896, 1091 |
| AclWI | GGATC | 3 cut(s) | 933, 1037, 1542 |
| AcsI | RAATTY | 3 cut(s) | 76, 1363, 1771 |
| AfaI | GTAC | 4 cut(s) | 508, 628, 1416, 1441 |
| AfeI | AGCGCT | 1 cut(s) | 252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1139 |
| AjnI | CCWGG | 2 cut(s) | 569, 1563 |
| AluBI | AGCT | 8 cut(s) | 6, 20, 97, 776, 905, 1117, 1164, 1214 |
| AluI | AGCT | 8 cut(s) | 6, 20, 97, 776, 905, 1117, 1164, 1214 |
| Alw21I | GWGCWC | 4 cut(s) | 8, 270, 859, 1675 |
| AlwI | GGATC | 3 cut(s) | 933, 1037, 1542 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1354 |
| Aor51HI | AGCGCT | 1 cut(s) | 252 |
| AoxI | GGCC | 3 cut(s) | 938, 1253, 1561 |
| ApeKI | GCWGC | 1 cut(s) | 253 |
| ApoI | RAATTY | 3 cut(s) | 76, 1363, 1771 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1455, 1487 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 19, 204, 1749 |
| AspLEI | GCGC | 2 cut(s) | 253, 673 |
| AspS9I | GGNCC | 1 cut(s) | 750 |
| AsuC2I | CCSGG | 1 cut(s) | 449 |
| AsuHPI | GGTGA | 3 cut(s) | 961, 1346, 1770 |
| AvaII | GGWCC | 1 cut(s) | 750 |
| BanI | GGYRCC | 1 cut(s) | 1567 |
| BanII | GRGCYC | 4 cut(s) | 8, 454, 768, 1608 |
| BauI | CACGAG | 1 cut(s) | 453 |
| Bbv12I | GWGCWC | 4 cut(s) | 8, 270, 859, 1675 |
| BbvI | GCAGC | 1 cut(s) | 240 |
| BccI | CCATC | 8 cut(s) | 248, 452, 755, 913, 1066, 1070, 1490, 1753 |
| BceAI | ACGGC | 1 cut(s) | 537 |
| BciT130I | CCWGG | 2 cut(s) | 571, 1565 |
| BciVI | GTATCC | 1 cut(s) | 1178 |
| BclI | TGATCA | 2 cut(s) | 588, 1176 |
| BcnI | CCSGG | 1 cut(s) | 449 |
| BfaI | CTAG | 2 cut(s) | 1251, 1875 |
| BfmI | CTRYAG | 1 cut(s) | 496 |
| BfoI | RGCGCY | 1 cut(s) | 254 |
| BfuI | GTATCC | 1 cut(s) | 1178 |
| BisI | GCNGC | 2 cut(s) | 254, 897 |
| BlsI | GCNGC | 2 cut(s) | 255, 898 |
| BmcAI | AGTACT | 1 cut(s) | 508 |
| Bme1390I | CCNGG | 3 cut(s) | 449, 571, 1565 |
| Bme18I | GGWCC | 1 cut(s) | 750 |
| BmgT120I | GGNCC | 1 cut(s) | 750 |
| BmiI | GGNNCC | 3 cut(s) | 751, 1517, 1569 |
| BmrFI | CCNGG | 3 cut(s) | 449, 571, 1565 |
| BmsI | GCATC | 2 cut(s) | 1144, 1306 |
| BpuEI | CTTGAG | 1 cut(s) | 336 |
| BpuMI | CCSGG | 1 cut(s) | 449 |
| BsaJI | CCNNGG | 1 cut(s) | 121 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1139 |
| Bse1I | ACTGG | 2 cut(s) | 1291, 1629 |
| Bse3DI | GCAATG | 3 cut(s) | 343, 524, 1431 |
| BseBI | CCWGG | 2 cut(s) | 571, 1565 |
| BseDI | CCNNGG | 1 cut(s) | 121 |
| BseGI | GGATG | 3 cut(s) | 1081, 1321, 1831 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1139 |
| BseMI | GCAATG | 3 cut(s) | 343, 524, 1431 |
| BseMII | CTCAG | 1 cut(s) | 1361 |
| BseNI | ACTGG | 2 cut(s) | 1291, 1629 |
| BseRI | GAGGAG | 1 cut(s) | 282 |
| BseXI | GCAGC | 1 cut(s) | 240 |
| BseYI | CCCAGC | 1 cut(s) | 776 |
| BsgI | GTGCAG | 1 cut(s) | 239 |
| BshFI | GGCC | 3 cut(s) | 940, 1255, 1563 |
| BshNI | GGYRCC | 1 cut(s) | 1567 |
| BsiHKAI | GWGCWC | 4 cut(s) | 8, 270, 859, 1675 |
| BsiSI | CCGG | 1 cut(s) | 448 |
| BslFI | GGGAC | 3 cut(s) | 763, 818, 1002 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1139 |
| BsmFI | GGGAC | 3 cut(s) | 763, 818, 1002 |
| BsnI | GGCC | 3 cut(s) | 940, 1255, 1563 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 270, 454, 768, 859, 1608, 1675 |
| Bsp143I | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| BspACI | CCGC | 2 cut(s) | 896, 1091 |
| BspANI | GGCC | 3 cut(s) | 940, 1255, 1563 |
| BspCNI | CTCAG | 1 cut(s) | 1360 |
| BspLI | GGNNCC | 3 cut(s) | 751, 1517, 1569 |
| BspPI | GGATC | 3 cut(s) | 933, 1037, 1542 |
| BspQI | GCTCTTC | 1 cut(s) | 13 |
| BspT107I | GGYRCC | 1 cut(s) | 1567 |
| BsrDI | GCAATG | 3 cut(s) | 343, 524, 1431 |
| BsrI | ACTGG | 2 cut(s) | 1291, 1629 |
| BssECI | CCNNGG | 1 cut(s) | 121 |
| BssMI | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| BssSI | CACGAG | 1 cut(s) | 453 |
| BssT1I | CCWWGG | 1 cut(s) | 121 |
| Bst2BI | CACGAG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 2 cut(s) | 571, 1565 |
| Bst4CI | ACNGT | 4 cut(s) | 221, 511, 613, 1261 |
| Bst6I | CTCTTC | 1 cut(s) | 13 |
| BstC8I | GCNNGC | 2 cut(s) | 95, 128 |
| BstDEI | CTNAG | 1 cut(s) | 1347 |
| BstF5I | GGATG | 3 cut(s) | 1081, 1321, 1831 |
| BstH2I | RGCGCY | 1 cut(s) | 254 |
| BstHHI | GCGC | 2 cut(s) | 253, 673 |
| BstKTI | GATC | 5 cut(s) | 591, 928, 1045, 1179, 1537 |
| BstMBI | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 902 |
| BstNI | CCWGG | 2 cut(s) | 571, 1565 |
| BstSCI | CCNGG | 3 cut(s) | 447, 569, 1563 |
| BstSFI | CTRYAG | 1 cut(s) | 496 |
| BstV1I | GCAGC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 2 cut(s) | 1042, 1534 |
| BstYI | RGATCY | 2 cut(s) | 1042, 1534 |
| BsuI | GTATCC | 1 cut(s) | 1178 |
| BsuRI | GGCC | 3 cut(s) | 940, 1255, 1563 |
| BtsCI | GGATG | 3 cut(s) | 1081, 1321, 1831 |
| BtsI | GCAGTG | 1 cut(s) | 1012 |
| BtsIMutI | CAGTG | 1 cut(s) | 1012 |
| Cac8I | GCNNGC | 2 cut(s) | 95, 128 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1354 |
| CfoI | GCGC | 2 cut(s) | 253, 673 |
| Cfr13I | GGNCC | 1 cut(s) | 750 |
| CsiI | ACCWGGT | 1 cut(s) | 569 |
| Csp6I | GTAC | 4 cut(s) | 507, 627, 1415, 1440 |
| CviAII | CATG | 8 cut(s) | 271, 683, 866, 1601, 1702, 1756, 1788, 1893 |
| CviQI | GTAC | 4 cut(s) | 507, 627, 1415, 1440 |
| DdeI | CTNAG | 1 cut(s) | 1347 |
| DpnI | GATC | 5 cut(s) | 590, 927, 1044, 1178, 1536 |
| DpnII | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| Eam1104I | CTCTTC | 1 cut(s) | 13 |
| EarI | CTCTTC | 1 cut(s) | 13 |
| Ecl136II | GAGCTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 121 |
| Eco147I | AGGCCT | 2 cut(s) | 940, 1563 |
| Eco24I | GRGCYC | 4 cut(s) | 8, 454, 768, 1608 |
| Eco47I | GGWCC | 1 cut(s) | 750 |
| Eco47III | AGCGCT | 1 cut(s) | 252 |
| Eco53kI | GAGCTC | 1 cut(s) | 6 |
| EcoICRI | GAGCTC | 1 cut(s) | 6 |
| EcoRII | CCWGG | 2 cut(s) | 569, 1563 |
| EcoT14I | CCWWGG | 1 cut(s) | 121 |
| EcoT38I | GRGCYC | 4 cut(s) | 8, 454, 768, 1608 |
| ErhI | CCWWGG | 1 cut(s) | 121 |
| FaeI | CATG | 8 cut(s) | 274, 686, 869, 1604, 1705, 1759, 1791, 1896 |
| FaqI | GGGAC | 3 cut(s) | 763, 818, 1002 |
| FatI | CATG | 8 cut(s) | 270, 682, 865, 1600, 1701, 1755, 1787, 1892 |
| FauI | CCCGC | 1 cut(s) | 1084 |
| FauNDI | CATATG | 1 cut(s) | 1299 |
| FbaI | TGATCA | 2 cut(s) | 588, 1176 |
| Fnu4HI | GCNGC | 2 cut(s) | 254, 897 |
| FokI | GGATG | 3 cut(s) | 1088, 1328, 1838 |
| FriOI | GRGCYC | 4 cut(s) | 8, 454, 768, 1608 |
| Fsp4HI | GCNGC | 2 cut(s) | 254, 897 |
| FspBI | CTAG | 2 cut(s) | 1251, 1875 |
| GlaI | GCGC | 2 cut(s) | 252, 672 |
| GluI | GCNGC | 2 cut(s) | 254, 897 |
| GsaI | CCCAGC | 1 cut(s) | 780 |
| HaeII | RGCGCY | 1 cut(s) | 254 |
| HaeIII | GGCC | 3 cut(s) | 940, 1255, 1563 |
| HapII | CCGG | 1 cut(s) | 448 |
| HhaI | GCGC | 2 cut(s) | 253, 673 |
| Hin1II | CATG | 8 cut(s) | 274, 686, 869, 1604, 1705, 1759, 1791, 1896 |
| Hin6I | GCGC | 2 cut(s) | 251, 671 |
| HinP1I | GCGC | 2 cut(s) | 251, 671 |
| HindIII | AAGCTT | 2 cut(s) | 95, 903 |
| HinfI | GANTC | 5 cut(s) | 274, 1027, 1597, 1727, 1784 |
| HpaII | CCGG | 1 cut(s) | 448 |
| HphI | GGTGA | 3 cut(s) | 961, 1346, 1770 |
| Hpy166II | GTNNAC | 3 cut(s) | 326, 445, 1148 |
| Hpy188I | TCNGA | 4 cut(s) | 160, 651, 996, 1350 |
| Hpy188III | TCNNGA | 7 cut(s) | 12, 115, 209, 455, 1046, 1313, 1847 |
| Hpy8I | GTNNAC | 3 cut(s) | 326, 445, 1148 |
| HpyAV | CCTTC | 2 cut(s) | 978, 1610 |
| HpyCH4III | ACNGT | 4 cut(s) | 221, 511, 613, 1261 |
| HpyCH4IV | ACGT | 1 cut(s) | 441 |
| HpyCH4V | TGCA | 9 cut(s) | 256, 283, 981, 1191, 1319, 1342, 1401, 1455, 1791 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 902 |
| HpyF3I | CTNAG | 1 cut(s) | 1347 |
| HpySE526I | ACGT | 1 cut(s) | 441 |
| Hsp92II | CATG | 8 cut(s) | 274, 686, 869, 1604, 1705, 1759, 1791, 1896 |
| HspAI | GCGC | 2 cut(s) | 251, 671 |
| Ksp22I | TGATCA | 2 cut(s) | 588, 1176 |
| Kzo9I | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| LguI | GCTCTTC | 1 cut(s) | 13 |
| LmnI | GCTCC | 1 cut(s) | 1678 |
| Lsp1109I | GCAGC | 1 cut(s) | 240 |
| LweI | GCATC | 2 cut(s) | 1144, 1306 |
| MabI | ACCWGGT | 1 cut(s) | 569 |
| MaeI | CTAG | 2 cut(s) | 1251, 1875 |
| MaeII | ACGT | 1 cut(s) | 441 |
| MaeIII | GTNAC | 9 cut(s) | 235, 437, 511, 616, 678, 949, 1007, 1356, 1776 |
| MalI | GATC | 5 cut(s) | 590, 927, 1044, 1178, 1536 |
| MboI | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| MboII | GAAGA | 4 cut(s) | 63, 129, 698, 1742 |
| MflI | RGATCY | 2 cut(s) | 1042, 1534 |
| MhlI | GDGCHC | 7 cut(s) | 8, 270, 454, 768, 859, 1608, 1675 |
| MlyI | GAGTC | 1 cut(s) | 1721 |
| MmeI | TCCRAC | 3 cut(s) | 629, 1368, 1883 |
| MnlI | CCTC | 8 cut(s) | 303, 483, 541, 818, 1133, 1414, 1553, 1709 |
| MroXI | GAANNNNTTC | 3 cut(s) | 19, 204, 1749 |
| MslI | CAYNNNNRTG | 2 cut(s) | 812, 1070 |
| MspI | CCGG | 1 cut(s) | 448 |
| MspR9I | CCNGG | 3 cut(s) | 449, 571, 1565 |
| MvaI | CCWGG | 2 cut(s) | 571, 1565 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 902 |
| NciI | CCSGG | 1 cut(s) | 449 |
| NdeI | CATATG | 1 cut(s) | 1299 |
| NdeII | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| NlaIII | CATG | 8 cut(s) | 274, 686, 869, 1604, 1705, 1759, 1791, 1896 |
| NlaIV | GGNNCC | 3 cut(s) | 751, 1517, 1569 |
| NmeAIII | GCCGAG | 1 cut(s) | 1709 |
| NmuCI | GTSAC | 4 cut(s) | 511, 949, 1007, 1776 |
| PceI | AGGCCT | 2 cut(s) | 940, 1563 |
| PciSI | GCTCTTC | 1 cut(s) | 13 |
| PdmI | GAANNNNTTC | 3 cut(s) | 19, 204, 1749 |
| PfeI | GAWTC | 4 cut(s) | 274, 1027, 1597, 1784 |
| PkrI | GCNGC | 2 cut(s) | 255, 898 |
| PleI | GAGTC | 1 cut(s) | 1721 |
| PpsI | GAGTC | 1 cut(s) | 1721 |
| PsiI | TTATAA | 2 cut(s) | 1580, 1692 |
| Psp124BI | GAGCTC | 1 cut(s) | 8 |
| Psp6I | CCWGG | 2 cut(s) | 569, 1563 |
| PspFI | CCCAGC | 1 cut(s) | 776 |
| PspGI | CCWGG | 2 cut(s) | 569, 1563 |
| PspN4I | GGNNCC | 3 cut(s) | 751, 1517, 1569 |
| PspPI | GGNCC | 1 cut(s) | 750 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1354 |
| PsuI | RGATCY | 2 cut(s) | 1042, 1534 |
| RsaI | GTAC | 4 cut(s) | 508, 628, 1416, 1441 |
| RsaNI | GTAC | 4 cut(s) | 507, 627, 1415, 1440 |
| RseI | CAYNNNNRTG | 2 cut(s) | 812, 1070 |
| SacI | GAGCTC | 1 cut(s) | 8 |
| SapI | GCTCTTC | 1 cut(s) | 13 |
| SatI | GCNGC | 2 cut(s) | 254, 897 |
| Sau3AI | GATC | 5 cut(s) | 588, 925, 1042, 1176, 1534 |
| Sau96I | GGNCC | 1 cut(s) | 750 |
| ScaI | AGTACT | 1 cut(s) | 508 |
| SchI | GAGTC | 1 cut(s) | 1721 |
| ScrFI | CCNGG | 3 cut(s) | 449, 571, 1565 |
| SduI | GDGCHC | 7 cut(s) | 8, 270, 454, 768, 859, 1608, 1675 |
| SexAI | ACCWGGT | 1 cut(s) | 569 |
| SfaNI | GCATC | 2 cut(s) | 1144, 1306 |
| SfcI | CTRYAG | 1 cut(s) | 496 |
| SinI | GGWCC | 1 cut(s) | 750 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 812, 1070 |
| SmlI | CTYRAG | 1 cut(s) | 351 |
| SmoI | CTYRAG | 1 cut(s) | 351 |
| SseBI | AGGCCT | 2 cut(s) | 940, 1563 |
| SsiI | CCGC | 2 cut(s) | 896, 1091 |
| SspI | AATATT | 2 cut(s) | 418, 1383 |
| SspMI | CTAG | 2 cut(s) | 1251, 1875 |
| SstI | GAGCTC | 1 cut(s) | 8 |
| StuI | AGGCCT | 2 cut(s) | 940, 1563 |
| StyD4I | CCNGG | 3 cut(s) | 447, 569, 1563 |
| StyI | CCWWGG | 1 cut(s) | 121 |
| TaaI | ACNGT | 4 cut(s) | 221, 511, 613, 1261 |
| TaiI | ACGT | 1 cut(s) | 444 |
| TaqI | TCGA | 4 cut(s) | 210, 1473, 1743, 1883 |
| TatI | WGTACW | 1 cut(s) | 506 |
| TauI | GCSGC | 1 cut(s) | 899 |
| TfiI | GAWTC | 4 cut(s) | 274, 1027, 1597, 1784 |
| TscAI | CASTG | 1 cut(s) | 1012 |
| TseFI | GTSAC | 4 cut(s) | 511, 949, 1007, 1776 |
| TseI | GCWGC | 1 cut(s) | 253 |
| Tsp45I | GTSAC | 4 cut(s) | 511, 949, 1007, 1776 |
| TspGWI | ACGGA | 2 cut(s) | 1427, 1579 |
| TspRI | CASTG | 1 cut(s) | 1012 |
| VpaK11BI | GGWCC | 1 cut(s) | 750 |
| XapI | RAATTY | 3 cut(s) | 76, 1363, 1771 |
| XmnI | GAANNNNTTC | 3 cut(s) | 19, 204, 1749 |
| XspI | CTAG | 2 cut(s) | 1251, 1875 |
| ZrmI | AGTACT | 1 cut(s) | 508 |