Prupe.8G230100_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20548011 .. 20550028
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G230100.1

Sequence Viewer

Length: 1896 bp
ATGAGCTCTTCAGGAACAGCTTCAAAAGTAAAGTTATCATCTTTATTCACAAACCCACAAAGACCCACATCTTCAAATTCCAAAACTTCAAGCAAGCTTTCATCTTTGTTCATCAAGAACCAAGGCACGCCCACTTCTTCAAATCCCACAACTTCATCAGAAAACCCAATTTCCAAAGTTCCAATCCAAACCCAACTTGAAAGATTTCTCGAAACCAACTGTAAGTCAGGTAATGTTACCATCAATGAAGCGCTGCACTATTTTGAGCACATGATTCAAATGCAACCCACTCCTCCAATTTGGTCATTCAATCGTTTATTTGGTGGACTTGCCAAGAGTAAGCATTGCTCTCAAGTTTTTTTGTTTTACAATAAGTTAATATCTGTTGGGTTGTTGCCTAATTTCATTACGCTTAATATTTTGCTTAATTGCTTTTGTAACGTGAACCGGGCTCGTGATGGTTTTGTGGTTATGGGAAGTCTTTTAAGGAGGGGCTATAGACCAAGTACTGTGACTTATACGGCATTGCTTAAAGGGTTGTGTATGGAGGATAGGATTGATGTGGCAACCAGGTTGTTTAAGACAATGATCAAGTTGGGGTGTCAGCCTACTGTGGTTACTTTTGGTACTTTGATTAACGGGTTGTGTCGGACAGGAAATACGAATGTTGCGCTTCGGTTACATGAAGAAATGGCTAATGGGAATGGTGTCTATGGTGTTGAGTGTAAGCCAAGTGTAGTATCTTATGGGACCATTATTGATGGGCTCTGTAAAGCTGGGTTGGTAGATAAGGCGAAAGAACTTTTCATAGAAATGAAAGATAGAGGATTTGTCCCTGATGTGATTGTATATAGTGCTCTAATACATGAACTATACTACAATGAAAAATGGGAAGCGGCTAAAGCTTTGTTAAATGAGATGGTGGATCAGGGTGTCAGGCCTAATGTGGTGACATTCAATGTGTTAATAGGAGTGCTTTGCAGAAGGGGACATCTGAAAGAAAGCAGTGACTTGTTAAAGTTGATGATTCAAAGGGGCATAGATCCTGATGTATTTACTTACAACACTTTGATGGATGGCTTCTGTTTAGCGGGTAGGCTTAATGAAGCAAGAGAGCTGTTTCATTCTATCCCAAGTAGAGGGTGTGAACCTGATGCTATTAGCTACAATGTGTTGATCAATGGATACTGCAAGAATAGGAATATACAGGAAGCTGTCAATCTTTACAAGGAAATGATTGGCAAAGGAACTAGGCCAACAGTAATAACATATAACTCCTTATTAACTGGTCTTTTTCATATGGGTAAAGTTCAGGATGCACAAGAACTTTTTGGTGAAATGCAAACTCAGAACCTGTTACCAAATTCAACAACATATAAAATATTGTTGGACGGGCTTTGCAAAACTGATTGCGTACCAGAGGCAATGGAAGTTTTCCGTACTTTAGAAAATTGCAACTTCAAAATTAGTGTCGAAATGTTAAATTGCCTTATTGATGGCTTCTGTAAAGCAGGGAACCTTGAAGTTGCTTGGGATCTTTTTCTTACATTGTCAAATAGAGGCCTGGCACCGAATGTTATAACATATTCCGTGATGATTCATGGGCTCTGTATAGAAGGACAACTGGAAAAGGCAAATGGTTTGTTTATAGAAATGGAAGCGAATGGTTGTGCTCCAAATGTCATTATTTATAATATCCTCATGCGTGGTTTCTGCCAAAGTGATGACTCGGCGAAAGTGGTCGAACTTCTTCACATGATGGTCGCAAGAAATTTGTCACCAGATTCATGCACAATCTCCATTGTCATAGACTTGCTCTCAAAGGATGAAAAGTATCGTAAATGTCTGGACTTGCTTCCAACATTTCCTGCCACTAGCCAATCGAAGATGACATGA

Protein Analysis

632

Amino Acids

70.14

Weight (kDa)

8.22

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1580, 1692
AccB1I GGYRCC 1 cut(s) 1567
AciI CCGC 2 cut(s) 896, 1091
AclWI GGATC 3 cut(s) 933, 1037, 1542
AcsI RAATTY 3 cut(s) 76, 1363, 1771
AfaI GTAC 4 cut(s) 508, 628, 1416, 1441
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 1139
AjnI CCWGG 2 cut(s) 569, 1563
AluBI AGCT 8 cut(s) 6, 20, 97, 776, 905, 1117, 1164, 1214
AluI AGCT 8 cut(s) 6, 20, 97, 776, 905, 1117, 1164, 1214
Alw21I GWGCWC 4 cut(s) 8, 270, 859, 1675
AlwI GGATC 3 cut(s) 933, 1037, 1542
AlwNI CAGNNNCTG 1 cut(s) 1354
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 3 cut(s) 938, 1253, 1561
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 3 cut(s) 76, 1363, 1771
ArsI GACNNNNNNTTYG 2 cut(s) 1455, 1487
Asp700I GAANNNNTTC 3 cut(s) 19, 204, 1749
AspLEI GCGC 2 cut(s) 253, 673
AspS9I GGNCC 1 cut(s) 750
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 961, 1346, 1770
AvaII GGWCC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 1567
BanII GRGCYC 4 cut(s) 8, 454, 768, 1608
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 4 cut(s) 8, 270, 859, 1675
BbvI GCAGC 1 cut(s) 240
BccI CCATC 8 cut(s) 248, 452, 755, 913, 1066, 1070, 1490, 1753
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 2 cut(s) 571, 1565
BciVI GTATCC 1 cut(s) 1178
BclI TGATCA 2 cut(s) 588, 1176
BcnI CCSGG 1 cut(s) 449
BfaI CTAG 2 cut(s) 1251, 1875
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 254
BfuI GTATCC 1 cut(s) 1178
BisI GCNGC 2 cut(s) 254, 897
BlsI GCNGC 2 cut(s) 255, 898
BmcAI AGTACT 1 cut(s) 508
Bme1390I CCNGG 3 cut(s) 449, 571, 1565
Bme18I GGWCC 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 3 cut(s) 751, 1517, 1569
BmrFI CCNGG 3 cut(s) 449, 571, 1565
BmsI GCATC 2 cut(s) 1144, 1306
BpuEI CTTGAG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 1139
Bse1I ACTGG 2 cut(s) 1291, 1629
Bse3DI GCAATG 3 cut(s) 343, 524, 1431
BseBI CCWGG 2 cut(s) 571, 1565
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 3 cut(s) 1081, 1321, 1831
BseLI CCNNNNNNNGG 1 cut(s) 1139
BseMI GCAATG 3 cut(s) 343, 524, 1431
BseMII CTCAG 1 cut(s) 1361
BseNI ACTGG 2 cut(s) 1291, 1629
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 240
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 3 cut(s) 940, 1255, 1563
BshNI GGYRCC 1 cut(s) 1567
BsiHKAI GWGCWC 4 cut(s) 8, 270, 859, 1675
BsiSI CCGG 1 cut(s) 448
BslFI GGGAC 3 cut(s) 763, 818, 1002
BslI CCNNNNNNNGG 1 cut(s) 1139
BsmFI GGGAC 3 cut(s) 763, 818, 1002
BsnI GGCC 3 cut(s) 940, 1255, 1563
Bsp1286I GDGCHC 7 cut(s) 8, 270, 454, 768, 859, 1608, 1675
Bsp143I GATC 5 cut(s) 588, 925, 1042, 1176, 1534
BspACI CCGC 2 cut(s) 896, 1091
BspANI GGCC 3 cut(s) 940, 1255, 1563
BspCNI CTCAG 1 cut(s) 1360
BspLI GGNNCC 3 cut(s) 751, 1517, 1569
BspPI GGATC 3 cut(s) 933, 1037, 1542
BspQI GCTCTTC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 1567
BsrDI GCAATG 3 cut(s) 343, 524, 1431
BsrI ACTGG 2 cut(s) 1291, 1629
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 5 cut(s) 588, 925, 1042, 1176, 1534
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 571, 1565
Bst4CI ACNGT 4 cut(s) 221, 511, 613, 1261
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 95, 128
BstDEI CTNAG 1 cut(s) 1347
BstF5I GGATG 3 cut(s) 1081, 1321, 1831
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 2 cut(s) 253, 673
BstKTI GATC 5 cut(s) 591, 928, 1045, 1179, 1537
BstMBI GATC 5 cut(s) 588, 925, 1042, 1176, 1534
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNI CCWGG 2 cut(s) 571, 1565
BstSCI CCNGG 3 cut(s) 447, 569, 1563
BstSFI CTRYAG 1 cut(s) 496
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 2 cut(s) 1042, 1534
BstYI RGATCY 2 cut(s) 1042, 1534
BsuI GTATCC 1 cut(s) 1178
BsuRI GGCC 3 cut(s) 940, 1255, 1563
BtsCI GGATG 3 cut(s) 1081, 1321, 1831
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 1 cut(s) 1012
Cac8I GCNNGC 2 cut(s) 95, 128
CaiI CAGNNNCTG 1 cut(s) 1354
CfoI GCGC 2 cut(s) 253, 673
Cfr13I GGNCC 1 cut(s) 750
CsiI ACCWGGT 1 cut(s) 569
Csp6I GTAC 4 cut(s) 507, 627, 1415, 1440
CviAII CATG 8 cut(s) 271, 683, 866, 1601, 1702, 1756, 1788, 1893
CviQI GTAC 4 cut(s) 507, 627, 1415, 1440
DdeI CTNAG 1 cut(s) 1347
DpnI GATC 5 cut(s) 590, 927, 1044, 1178, 1536
DpnII GATC 5 cut(s) 588, 925, 1042, 1176, 1534
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 2 cut(s) 940, 1563
Eco24I GRGCYC 4 cut(s) 8, 454, 768, 1608
Eco47I GGWCC 1 cut(s) 750
Eco47III AGCGCT 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 569, 1563
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 4 cut(s) 8, 454, 768, 1608
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 8 cut(s) 274, 686, 869, 1604, 1705, 1759, 1791, 1896
FaqI GGGAC 3 cut(s) 763, 818, 1002
FatI CATG 8 cut(s) 270, 682, 865, 1600, 1701, 1755, 1787, 1892
FauI CCCGC 1 cut(s) 1084
FauNDI CATATG 1 cut(s) 1299
FbaI TGATCA 2 cut(s) 588, 1176
Fnu4HI GCNGC 2 cut(s) 254, 897
FokI GGATG 3 cut(s) 1088, 1328, 1838
FriOI GRGCYC 4 cut(s) 8, 454, 768, 1608
Fsp4HI GCNGC 2 cut(s) 254, 897
FspBI CTAG 2 cut(s) 1251, 1875
GlaI GCGC 2 cut(s) 252, 672
GluI GCNGC 2 cut(s) 254, 897
GsaI CCCAGC 1 cut(s) 780
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 3 cut(s) 940, 1255, 1563
HapII CCGG 1 cut(s) 448
HhaI GCGC 2 cut(s) 253, 673
Hin1II CATG 8 cut(s) 274, 686, 869, 1604, 1705, 1759, 1791, 1896
Hin6I GCGC 2 cut(s) 251, 671
HinP1I GCGC 2 cut(s) 251, 671
HindIII AAGCTT 2 cut(s) 95, 903
HinfI GANTC 5 cut(s) 274, 1027, 1597, 1727, 1784
HpaII CCGG 1 cut(s) 448
HphI GGTGA 3 cut(s) 961, 1346, 1770
Hpy166II GTNNAC 3 cut(s) 326, 445, 1148
Hpy188I TCNGA 4 cut(s) 160, 651, 996, 1350
Hpy188III TCNNGA 7 cut(s) 12, 115, 209, 455, 1046, 1313, 1847
Hpy8I GTNNAC 3 cut(s) 326, 445, 1148
HpyAV CCTTC 2 cut(s) 978, 1610
HpyCH4III ACNGT 4 cut(s) 221, 511, 613, 1261
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 9 cut(s) 256, 283, 981, 1191, 1319, 1342, 1401, 1455, 1791
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 1 cut(s) 1347
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 8 cut(s) 274, 686, 869, 1604, 1705, 1759, 1791, 1896
HspAI GCGC 2 cut(s) 251, 671
Ksp22I TGATCA 2 cut(s) 588, 1176
Kzo9I GATC 5 cut(s) 588, 925, 1042, 1176, 1534
LguI GCTCTTC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 1678
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 2 cut(s) 1144, 1306
MabI ACCWGGT 1 cut(s) 569
MaeI CTAG 2 cut(s) 1251, 1875
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 9 cut(s) 235, 437, 511, 616, 678, 949, 1007, 1356, 1776
MalI GATC 5 cut(s) 590, 927, 1044, 1178, 1536
MboI GATC 5 cut(s) 588, 925, 1042, 1176, 1534
MboII GAAGA 4 cut(s) 63, 129, 698, 1742
MflI RGATCY 2 cut(s) 1042, 1534
MhlI GDGCHC 7 cut(s) 8, 270, 454, 768, 859, 1608, 1675
MlyI GAGTC 1 cut(s) 1721
MmeI TCCRAC 3 cut(s) 629, 1368, 1883
MnlI CCTC 8 cut(s) 303, 483, 541, 818, 1133, 1414, 1553, 1709
MroXI GAANNNNTTC 3 cut(s) 19, 204, 1749
MslI CAYNNNNRTG 2 cut(s) 812, 1070
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 3 cut(s) 449, 571, 1565
MvaI CCWGG 2 cut(s) 571, 1565
MwoI GCNNNNNNNGC 1 cut(s) 902
NciI CCSGG 1 cut(s) 449
NdeI CATATG 1 cut(s) 1299
NdeII GATC 5 cut(s) 588, 925, 1042, 1176, 1534
NlaIII CATG 8 cut(s) 274, 686, 869, 1604, 1705, 1759, 1791, 1896
NlaIV GGNNCC 3 cut(s) 751, 1517, 1569
NmeAIII GCCGAG 1 cut(s) 1709
NmuCI GTSAC 4 cut(s) 511, 949, 1007, 1776
PceI AGGCCT 2 cut(s) 940, 1563
PciSI GCTCTTC 1 cut(s) 13
PdmI GAANNNNTTC 3 cut(s) 19, 204, 1749
PfeI GAWTC 4 cut(s) 274, 1027, 1597, 1784
PkrI GCNGC 2 cut(s) 255, 898
PleI GAGTC 1 cut(s) 1721
PpsI GAGTC 1 cut(s) 1721
PsiI TTATAA 2 cut(s) 1580, 1692
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 569, 1563
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 2 cut(s) 569, 1563
PspN4I GGNNCC 3 cut(s) 751, 1517, 1569
PspPI GGNCC 1 cut(s) 750
PstNI CAGNNNCTG 1 cut(s) 1354
PsuI RGATCY 2 cut(s) 1042, 1534
RsaI GTAC 4 cut(s) 508, 628, 1416, 1441
RsaNI GTAC 4 cut(s) 507, 627, 1415, 1440
RseI CAYNNNNRTG 2 cut(s) 812, 1070
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 13
SatI GCNGC 2 cut(s) 254, 897
Sau3AI GATC 5 cut(s) 588, 925, 1042, 1176, 1534
Sau96I GGNCC 1 cut(s) 750
ScaI AGTACT 1 cut(s) 508
SchI GAGTC 1 cut(s) 1721
ScrFI CCNGG 3 cut(s) 449, 571, 1565
SduI GDGCHC 7 cut(s) 8, 270, 454, 768, 859, 1608, 1675
SexAI ACCWGGT 1 cut(s) 569
SfaNI GCATC 2 cut(s) 1144, 1306
SfcI CTRYAG 1 cut(s) 496
SinI GGWCC 1 cut(s) 750
SmiMI CAYNNNNRTG 2 cut(s) 812, 1070
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
SseBI AGGCCT 2 cut(s) 940, 1563
SsiI CCGC 2 cut(s) 896, 1091
SspI AATATT 2 cut(s) 418, 1383
SspMI CTAG 2 cut(s) 1251, 1875
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 2 cut(s) 940, 1563
StyD4I CCNGG 3 cut(s) 447, 569, 1563
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 4 cut(s) 221, 511, 613, 1261
TaiI ACGT 1 cut(s) 444
TaqI TCGA 4 cut(s) 210, 1473, 1743, 1883
TatI WGTACW 1 cut(s) 506
TauI GCSGC 1 cut(s) 899
TfiI GAWTC 4 cut(s) 274, 1027, 1597, 1784
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 4 cut(s) 511, 949, 1007, 1776
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 4 cut(s) 511, 949, 1007, 1776
TspGWI ACGGA 2 cut(s) 1427, 1579
TspRI CASTG 1 cut(s) 1012
VpaK11BI GGWCC 1 cut(s) 750
XapI RAATTY 3 cut(s) 76, 1363, 1771
XmnI GAANNNNTTC 3 cut(s) 19, 204, 1749
XspI CTAG 2 cut(s) 1251, 1875
ZrmI AGTACT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.