Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Reverse (-)

32428162 .. 32428551

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0202000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCTCCATTGATGCTATCACCGCTAGCTGTGTTGCCTCCCTTGCGCTTGCAGAGGGAGGTAGTGCTCCTGATCTGGGGAGAATTGGTGGCGGCCCTGTTCGTCGGTCTTCCAAATCTTTTCTGATTGGGGAGCCTCTGACCTGCCGACCGGTCAACCCTATGGCCTTCAAGGCTCACCTCCTTTGTACCTGGATGGATGTCACTCCGGTGATGTTGAAGAAGAAGTCGGGCAAGCTACTTGGGAGTAGGAACAAGAATCATCGCCCTAGCAAGAAGCTGAATGTCACTGCTTTACGACTCTCTTACCCTGGAGTTACTGGTATTGATCCCAGCCCTAGCGACAAGGGCAAGGGAAAGCTTTGGGCTTTTCCAGGTTTCCATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

129

Amino Acids

13.61

Weight (kDa)

10.21

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	2 cut(s)	24, 93
AclWI	GGATC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	172, 220
AjnI	CCWGG	3 cut(s)	191, 310, 373
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	4 cut(s)	30, 238, 280, 361
AluI	AGCT	4 cut(s)	30, 238, 280, 361
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	3, 94, 165
AsiGI	ACCGGT	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	13, 170, 223
AsuNHI	GCTAGC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	193, 312, 375
BfaI	CTAG	3 cut(s)	27, 270, 339
BfuAI	ACCTGC	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	3 cut(s)	193, 312, 375
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	3 cut(s)	193, 312, 375
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	2 cut(s)	151, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	193, 312, 375
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	201, 205
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	5, 96, 167
BshTI	ACCGGT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	152, 209
BslI	CCNNNNNNNGG	1 cut(s)	77
BsnI	GGCC	3 cut(s)	5, 96, 167
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	73, 328
BspACI	CCGC	2 cut(s)	24, 93
BspANI	GGCC	3 cut(s)	5, 96, 167
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	73, 328
Bst2UI	CCWGG	3 cut(s)	193, 312, 375
BstC8I	GCNNGC	3 cut(s)	28, 51, 236
BstF5I	GGATG	2 cut(s)	201, 205
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	76, 331
BstMBI	GATC	2 cut(s)	73, 328
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 44, 173, 348
BstNI	CCWGG	3 cut(s)	193, 312, 375
BstSCI	CCNGG	3 cut(s)	191, 310, 373
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	5, 96, 167
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	201, 205
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	28, 51, 236
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	189
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	1 cut(s)	383
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	2 cut(s)	75, 330
DpnII	GATC	2 cut(s)	73, 328
EcoRII	CCWGG	3 cut(s)	191, 310, 373
FaeI	CATG	1 cut(s)	386
FaiI	YATR	2 cut(s)	164, 384
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	208, 212
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	3 cut(s)	27, 270, 339
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	94
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	5, 96, 167
HapII	CCGG	2 cut(s)	152, 209
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	259, 300
HpaII	CCGG	2 cut(s)	152, 209
HphI	GGTGA	3 cut(s)	13, 170, 223
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	126, 141
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 44, 173, 348
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	73, 328
LmnI	GCTCC	2 cut(s)	73, 133
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	27, 270, 339
MaeIII	GTNAC	3 cut(s)	202, 286, 316
MalI	GATC	2 cut(s)	75, 330
MboI	GATC	2 cut(s)	73, 328
MboII	GAAGA	3 cut(s)	102, 232, 235
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	16, 49, 49, 53, 147, 191
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	2 cut(s)	152, 209
MspR9I	CCNGG	3 cut(s)	193, 312, 375
MvaI	CCWGG	3 cut(s)	193, 312, 375
MwoI	GCNNNNNNNGC	4 cut(s)	23, 44, 173, 348
NdeII	GATC	2 cut(s)	73, 328
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	202, 286
OliI	CACNNNNGTG	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	191, 310, 373
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	191, 310, 373
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	2 cut(s)	73, 328
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	3 cut(s)	193, 312, 375
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	9 cut(s)	32, 64, 146, 183, 194, 240, 282, 363, 379
SfaNI	GCATC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	2 cut(s)	24, 93
SspMI	CTAG	3 cut(s)	27, 270, 339
StyD4I	CCNGG	3 cut(s)	191, 310, 373
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	84
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	202, 286
Tsp45I	GTSAC	2 cut(s)	202, 286
TspRI	CASTG	1 cut(s)	295
XspI	CTAG	3 cut(s)	27, 270, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.