Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Reverse (-)

32360553 .. 32360801

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTCGGGATTCAAAGGTACCATCCCCACTATCTGGCATCTCAGATCGGGTCTTACGATTCAGGATGTAGGGGATCAGTTTGTGTTTCAGTTTGAGAATGAGGTTGTCCGTAATCGAATTTTGCATGGAGGCCCTTGGTTCTATCGTAATACCATCTTGGTGGTGGGAGAATACGATGGATTTAGTCTGGTGGAGGAAGTGCCGCTGAATATGATGAAGATCTGGGTAGTGTTGGATTTGTATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

82

Amino Acids

9.56

Weight (kDa)

5.11

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	5 - 58	2.3e-09	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	33
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	13
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	17
BccI	CCATC	3 cut(s)	29, 161, 170
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	46
BsaBI	GATNNNNATC	2 cut(s)	218, 240
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse8I	GATNNNNATC	2 cut(s)	218, 240
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	2 cut(s)	21, 70
BseJI	GATNNNNATC	2 cut(s)	218, 240
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	33
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	44, 73, 219
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	3 cut(s)	44, 73, 219
BssT1I	CCWWGG	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	21, 70
BstKTI	GATC	3 cut(s)	47, 76, 222
BstMBI	GATC	3 cut(s)	44, 73, 219
BstX2I	RGATCY	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	21, 70
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	1 cut(s)	132
CviKI_1	RGCY	1 cut(s)	132
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	46, 75, 221
DpnII	GATC	3 cut(s)	44, 73, 219
Eco130I	CCWWGG	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	1 cut(s)	128
FaiI	YATR	2 cut(s)	126, 212
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	8, 77
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	2 cut(s)	9, 58
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	2 cut(s)	6, 62
HpyCH4V	TGCA	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	128
KpnI	GGTACC	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	44, 73, 219
LpnPI	CCDG	4 cut(s)	19, 47, 173, 208
LweI	GCATC	1 cut(s)	46
MalI	GATC	3 cut(s)	46, 75, 221
MboI	GATC	3 cut(s)	44, 73, 219
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	94, 122, 187
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	205
NdeII	GATC	3 cut(s)	44, 73, 219
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	9, 58
PflMI	CCANNNNNTGG	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	44, 73, 219
Sau96I	GGNCC	1 cut(s)	131
SetI	ASST	2 cut(s)	19, 105
SfaNI	GCATC	1 cut(s)	46
SgeI	CNNG	9 cut(s)	18, 46, 60, 74, 137, 147, 169, 200, 235
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	134
TaqI	TCGA	1 cut(s)	115
TasI	AATT	1 cut(s)	117
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	9, 58
TspDTI	ATGAA	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	33
XapI	RAATTY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.