Rw6G027020

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
50709584 .. 50711491
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027020.1

Sequence Viewer

Length: 1908 bp
ATGTCATGTTCAAAAGGCAAGCTTTCATCTTTATTCACGAACCCAGAAAGACCCACTTCTTCAAATTCATCCAAGCTTTCATCTTTATTCTTCACAACCCAAGTTACAGCTAGACCCACTTCTTCATATCCCACAACCTCAACAGAAGCACCAATTCCCAGTGTTCCAATCCAGACCCCACTTGAACATTTCCTCCAAACAAACTGCAAGTCAGGTAATTTCACTCTCAATGAAGCACTTCACTATTTTGACCGCATGATTCTTATGCAACCTGTTCCTCCAATGGCCTCGTTCAATCGTTTATTAGGTGGACTTGCCAAGAGTAAGCACTACTCTCATGTTTTCTCATTTTGCATCAAGTTAACATCTTCTGGGTTATTGCCTGATTTCATTACGCTTAATATTTTGCTGAACTGCTTTTGTAATGTGAAACGGGTTTGTGATGCTTTGGCGGCTCTGGGAAGTATGATTAGGAGGGGTTATAAACCAAGTGCTGTTACTTTTACTTCTTTGGTTAAAGGGTTTTGTATGGAGGATAGGATTGATGAGGCACTGAGGTTGTTGGAGAAAATGATTAAGTTTCAGTGTCAGCCTACTGTGATGACTTGTGGTACTTTGATTAATGGGCTGTGCAGGGCTGGAAAGACTAGCGTGGCACTTAGGTTGCATGAAGATATGGCTAAGGGGAATGGCGGATTTGGTGTTTGTTGTAAGCCGAATGTGGTTACTTATGGGATTATTATTGATAGGCTTTGTAAGGATGGCATGATAGATGAGGCAAAAGCCCTTTTCTTAGAAATGAAAGATAGAGGGATTCTTCCTGATGTGGTTGTGTATAGTGCTCTGATACATGGTTTGTACTATTATGAAAAGTGGGAAGCGGGTAAAGCTCTGTTACATGAGATGGTGCATTGCGGTATCAAGCCTAATCTCGTGACGTTCAATGTGCTAATAGCGGCACTTTGCAGAAGGGGAAATGTGAAAGAGAGCAGTGATTTGCTAAAGCTTATGGCACACAGAGGCATTAGTCCTGATTTATTTACATACAACACTTTGATAGATGGCTTCTGTTTGGTGGGTTGCCTTAATGAAGCGAGAGAGCTGTTTCATACTATTTCAAGTAGAGGGTGTCAACCTGATGCTGTTAGCTACAATGTGTTGATCAATGGATACTGCAAGAATTGGAAGATACATGAAGCTGTCAATGTTTATGAGGAAATGATCCGCAGAGGAGTTAGGCCAACTGTAGTAACTTATAATGCCTTATTAACTGGTCTGTTTAAGTTGGGAAGAGTTCAGGATGCACAGAAGCTGTTTGCTGAGATGCAAACTCAGAACGTGCTACCTAGTTCATCTACATATAAAATATTGTTGGACAGGCTTTGCAAAAATGATTGCATACCAGAGGCAATGGAAGTATTTCATACTTTAGAAAATAGCAGCAGCTGTGAACTTAGTGTAGAAATTTTTAATTCACTTATTAATGGGTATTGTAAGGCACGGAAGCTTGAAATTGCTTGGGACCTATATCACAAAATGTCAAAAAAAGGCCTGGTACCAGATGTTATAACATATAGCATGATGATTCATGGGCTCTGTATGGAAGGGCAACTCGAAAAGGCAAATGGTTTGTTTTTGGAAATGGAAGGAAAGGGTTGTGCTCCAAACATCATCACTTATAATACCCTTATGCGTGGTTTCTGCCAAAATAATAACTTGGAAAAGGTTGTTGAACTTCTTCATAAGATGTCGGAAAGAAATCTGTCACCAGATAACTCTACAACCTCCATTGTCATAGACTTGCTCTCAAAGGATGAAAGCTATCGGAAGTGTTTGGACTGGCTTCCAACATTTCCTGCCAGTAGCCAATTGAAAGCTGAGGTGACAAATTTCAAGTCATTTGCATGA

Protein Analysis

635

Amino Acids

70.94

Weight (kDa)

8.54

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 96 - 142 7.3e-06 PPR repeat family
PPR_2 PF13041 128 - 176 9.7e-11 PPR repeat family
PPR_1 PF12854 159 - 191 1.2e-10 PPR repeat
PPR_2 PF13041 163 - 212 8.7e-13 PPR repeat family
PPR PF01535 166 - 196 3.2e-06 PPR repeat
PPR_1 PF12854 195 - 226 2.5e-07 PPR repeat
PPR_1 PF12854 236 - 268 4.8e-12 PPR repeat
PPR_2 PF13041 239 - 286 2.4e-15 PPR repeat family
PPR PF01535 242 - 272 8.3e-08 PPR repeat
PPR_3 PF13812 263 - 321 3.6e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 274 - 323 3.9e-12 PPR repeat family
PPR_1 PF12854 306 - 337 6.3e-09 PPR repeat
PPR_2 PF13041 309 - 357 4.3e-16 PPR repeat family
PPR_3 PF13812 333 - 393 2.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 340 - 370 5.5e-11 PPR repeat
PPR_2 PF13041 345 - 390 2.2e-13 PPR repeat family
PPR PF01535 347 - 377 2.5e-06 PPR repeat
PPR_1 PF12854 375 - 407 7.5e-12 PPR repeat
PPR_2 PF13041 379 - 426 5.9e-19 PPR repeat family
PPR PF01535 382 - 412 3.1e-10 PPR repeat
TPR_24 PF23276 401 - 512 2.7e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 403 - 459 2.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 410 - 443 9.4e-10 PPR repeat
PPR_2 PF13041 414 - 463 4.1e-16 PPR repeat family
PPR PF01535 417 - 446 5.3e-06 PPR repeat
PPR_long PF17177 453 - 598 2.2e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 483 - 514 9.7e-07 PPR repeat
PPR_3 PF13812 484 - 529 4.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 487 - 533 1.1e-18 PPR repeat family
PPR PF01535 489 - 518 1.8e-07 PPR repeat
PPR_3 PF13812 509 - 566 2.8e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 516 - 549 7e-11 PPR repeat
PPR_2 PF13041 520 - 569 6.4e-18 PPR repeat family
PPR PF01535 523 - 553 1.7e-07 PPR repeat
PPR_3 PF13812 544 - 598 1.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 551 - 584 8.8e-11 PPR repeat
PPR_2 PF13041 555 - 603 1e-14 PPR repeat family
PPR PF01535 558 - 587 7.3e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 483, 1257, 1568, 1680
Acc65I GGTACC 1 cut(s) 1555
AccB1I GGYRCC 1 cut(s) 1555
AciI CCGC 7 cut(s) 253, 452, 693, 881, 915, 956, 1225
AclWI GGATC 1 cut(s) 1216
AcsI RAATTY 3 cut(s) 64, 1464, 1888
AfaI GTAC 3 cut(s) 613, 860, 1557
AjnI CCWGG 1 cut(s) 1551
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
Alw21I GWGCWC 2 cut(s) 844, 1663
AlwI GGATC 1 cut(s) 1216
AlwNI CAGNNNCTG 2 cut(s) 1312, 1446
AoxI GGCC 3 cut(s) 285, 1238, 1549
ApeKI GCWGC 2 cut(s) 1440, 1443
ApoI RAATTY 3 cut(s) 64, 1464, 1888
ArsI GACNNNNNNTTYG 3 cut(s) 194, 226, 1880
AseI ATTAAT 2 cut(s) 621, 1482
Asp700I GAANNNNTTC 3 cut(s) 237, 1419, 1737
Asp718I GGTACC 1 cut(s) 1555
AspS9I GGNCC 1 cut(s) 1522
AsuHPI GGTGA 2 cut(s) 1758, 1894
AvaII GGWCC 1 cut(s) 1522
BanI GGYRCC 1 cut(s) 1555
BanII GRGCYC 1 cut(s) 1596
BauI CACGAG 1 cut(s) 932
Bbv12I GWGCWC 2 cut(s) 844, 1663
BbvCI CCTCAGC 1 cut(s) 1878
BbvI GCAGC 2 cut(s) 1452, 1455
BccI CCATC 3 cut(s) 755, 898, 1055
BciT130I CCWGG 1 cut(s) 1553
BciVI GTATCC 1 cut(s) 1163
BclI TGATCA 1 cut(s) 1161
BfaI CTAG 3 cut(s) 111, 648, 1347
BfmI CTRYAG 1 cut(s) 1245
BfuI GTATCC 1 cut(s) 1163
BisI GCNGC 4 cut(s) 453, 957, 1441, 1444
BlsI GCNGC 4 cut(s) 454, 958, 1442, 1445
Bme1390I CCNGG 1 cut(s) 1553
Bme18I GGWCC 1 cut(s) 1522
BmgT120I GGNCC 1 cut(s) 1522
BmiI GGNNCC 2 cut(s) 1523, 1557
BmrFI CCNGG 1 cut(s) 1553
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 5 cut(s) 363, 433, 1129, 1291, 1314
BmuI ACTGGG 1 cut(s) 153
Bpu10I CCTNAGC 2 cut(s) 681, 1878
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 4 cut(s) 159, 1276, 1844, 1860
Bse3DI GCAATG 2 cut(s) 910, 1416
BseBI CCWGG 1 cut(s) 1553
BseGI GGATG 4 cut(s) 68, 766, 1306, 1819
BseMI GCAATG 2 cut(s) 910, 1416
BseMII CTCAG 4 cut(s) 545, 1311, 1346, 1869
BseNI ACTGG 4 cut(s) 159, 1276, 1844, 1860
BseRI GAGGAG 1 cut(s) 1245
BseXI GCAGC 2 cut(s) 1452, 1455
BsgI GTGCAG 1 cut(s) 652
BshFI GGCC 3 cut(s) 287, 1240, 1551
BshNI GGYRCC 1 cut(s) 1555
BsiHKAI GWGCWC 2 cut(s) 844, 1663
BslFI GGGAC 1 cut(s) 1535
BsmFI GGGAC 1 cut(s) 1535
BsnI GGCC 3 cut(s) 287, 1240, 1551
Bsp1286I GDGCHC 3 cut(s) 844, 1596, 1663
Bsp143I GATC 2 cut(s) 1161, 1221
BspACI CCGC 7 cut(s) 253, 452, 693, 881, 915, 956, 1225
BspANI GGCC 3 cut(s) 287, 1240, 1551
BspCNI CTCAG 4 cut(s) 546, 1312, 1345, 1870
BspLI GGNNCC 2 cut(s) 1523, 1557
BspPI GGATC 1 cut(s) 1216
BspT107I GGYRCC 1 cut(s) 1555
BsrDI GCAATG 2 cut(s) 910, 1416
BsrI ACTGG 4 cut(s) 159, 1276, 1844, 1860
BssMI GATC 2 cut(s) 1161, 1221
BssSI CACGAG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 932
Bst2UI CCWGG 1 cut(s) 1553
Bst4CI ACNGT 2 cut(s) 598, 1246
Bst6I CTCTTC 1 cut(s) 1285
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 8 cut(s) 554, 659, 681, 793, 1320, 1332, 1454, 1878
BstF5I GGATG 4 cut(s) 68, 766, 1306, 1819
BstKTI GATC 2 cut(s) 1164, 1224
BstMBI GATC 2 cut(s) 1161, 1221
BstMWI GCNNNNNNNGC 2 cut(s) 452, 887
BstNI CCWGG 1 cut(s) 1553
BstSCI CCNGG 1 cut(s) 1551
BstSFI CTRYAG 1 cut(s) 1245
BstV1I GCAGC 2 cut(s) 1452, 1455
BsuI GTATCC 1 cut(s) 1163
BsuRI GGCC 3 cut(s) 287, 1240, 1551
BtsCI GGATG 4 cut(s) 68, 766, 1306, 1819
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 4 cut(s) 166, 551, 590, 997
Cac8I GCNNGC 1 cut(s) 20
CaiI CAGNNNCTG 2 cut(s) 1312, 1446
Cfr13I GGNCC 1 cut(s) 1522
Csp6I GTAC 3 cut(s) 612, 859, 1556
CviQI GTAC 3 cut(s) 612, 859, 1556
DdeI CTNAG 8 cut(s) 554, 659, 681, 793, 1320, 1332, 1454, 1878
DpnI GATC 2 cut(s) 1163, 1223
DpnII GATC 2 cut(s) 1161, 1221
Eam1104I CTCTTC 1 cut(s) 1285
EarI CTCTTC 1 cut(s) 1285
EciI GGCGGA 1 cut(s) 708
Eco147I AGGCCT 1 cut(s) 1551
Eco24I GRGCYC 1 cut(s) 1596
Eco47I GGWCC 1 cut(s) 1522
EcoO109I RGGNCCY 1 cut(s) 1522
EcoRII CCWGG 1 cut(s) 1551
EcoT38I GRGCYC 1 cut(s) 1596
FalI AAGNNNNNCTT 3 cut(s) 38, 40, 72
FaqI GGGAC 1 cut(s) 1535
FauI CCCGC 1 cut(s) 874
FbaI TGATCA 1 cut(s) 1161
Fnu4HI GCNGC 4 cut(s) 453, 957, 1441, 1444
FokI GGATG 4 cut(s) 55, 773, 1313, 1826
FriOI GRGCYC 1 cut(s) 1596
Fsp4HI GCNGC 4 cut(s) 453, 957, 1441, 1444
FspBI CTAG 3 cut(s) 111, 648, 1347
GluI GCNGC 4 cut(s) 453, 957, 1441, 1444
HaeIII GGCC 3 cut(s) 287, 1240, 1551
HincII GTYRAC 2 cut(s) 363, 1133
HindII GTYRAC 2 cut(s) 363, 1133
HindIII AAGCTT 4 cut(s) 20, 74, 1004, 1505
HinfI GANTC 3 cut(s) 259, 814, 1585
HpaI GTTAAC 1 cut(s) 363
HphI GGTGA 2 cut(s) 1758, 1894
Hpy166II GTNNAC 4 cut(s) 311, 363, 1133, 1451
Hpy188I TCNGA 4 cut(s) 846, 1335, 1753, 1827
Hpy188III TCNNGA 6 cut(s) 37, 172, 821, 934, 1031, 1298
Hpy8I GTNNAC 4 cut(s) 311, 363, 1133, 1451
HpyAV CCTTC 3 cut(s) 963, 1598, 1640
HpyCH4III ACNGT 2 cut(s) 598, 1246
HpyCH4IV ACGT 2 cut(s) 938, 1338
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 887
HpyF3I CTNAG 8 cut(s) 554, 659, 681, 793, 1320, 1332, 1454, 1878
HpySE526I ACGT 2 cut(s) 938, 1338
KpnI GGTACC 1 cut(s) 1559
Ksp22I TGATCA 1 cut(s) 1161
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 1161, 1221
LmnI GCTCC 1 cut(s) 1666
Lsp1109I GCAGC 2 cut(s) 1452, 1455
LweI GCATC 5 cut(s) 363, 433, 1129, 1291, 1314
MaeI CTAG 3 cut(s) 111, 648, 1347
MaeII ACGT 2 cut(s) 938, 1338
MaeIII GTNAC 8 cut(s) 103, 496, 724, 894, 934, 1249, 1764, 1882
MalI GATC 2 cut(s) 1163, 1223
MboI GATC 2 cut(s) 1161, 1221
MboII GAAGA 9 cut(s) 51, 82, 114, 360, 683, 809, 1198, 1302, 1730
MfeI CAATTG 1 cut(s) 1868
MhlI GDGCHC 3 cut(s) 844, 1596, 1663
MluCI AATT 9 cut(s) 64, 153, 217, 1180, 1464, 1471, 1512, 1868, 1888
MmeI TCCRAC 4 cut(s) 543, 1353, 1731, 1871
MroXI GAANNNNTTC 3 cut(s) 237, 1419, 1737
MslI CAYNNNNRTG 1 cut(s) 1903
MspA1I CMGCKG 1 cut(s) 1446
MspR9I CCNGG 1 cut(s) 1553
MunI CAATTG 1 cut(s) 1868
MvaI CCWGG 1 cut(s) 1553
MwoI GCNNNNNNNGC 2 cut(s) 452, 887
NdeII GATC 2 cut(s) 1161, 1221
NlaIV GGNNCC 2 cut(s) 1523, 1557
NmuCI GTSAC 3 cut(s) 934, 1764, 1882
PceI AGGCCT 1 cut(s) 1551
PdmI GAANNNNTTC 3 cut(s) 237, 1419, 1737
PfeI GAWTC 3 cut(s) 259, 814, 1585
PkrI GCNGC 4 cut(s) 454, 958, 1442, 1445
PpuMI RGGWCCY 1 cut(s) 1522
PshBI ATTAAT 2 cut(s) 621, 1482
PsiI TTATAA 4 cut(s) 483, 1257, 1568, 1680
Psp5II RGGWCCY 1 cut(s) 1522
Psp6I CCWGG 1 cut(s) 1551
PspGI CCWGG 1 cut(s) 1551
PspN4I GGNNCC 2 cut(s) 1523, 1557
PspPI GGNCC 1 cut(s) 1522
PspPPI RGGWCCY 1 cut(s) 1522
PstNI CAGNNNCTG 2 cut(s) 1312, 1446
PvuII CAGCTG 1 cut(s) 1446
RsaI GTAC 3 cut(s) 613, 860, 1557
RsaNI GTAC 3 cut(s) 612, 859, 1556
RseI CAYNNNNRTG 1 cut(s) 1903
SatI GCNGC 4 cut(s) 453, 957, 1441, 1444
Sau3AI GATC 2 cut(s) 1161, 1221
Sau96I GGNCC 1 cut(s) 1522
ScrFI CCNGG 1 cut(s) 1553
SduI GDGCHC 3 cut(s) 844, 1596, 1663
SfaNI GCATC 5 cut(s) 363, 433, 1129, 1291, 1314
SfcI CTRYAG 1 cut(s) 1245
SinI GGWCC 1 cut(s) 1522
SmiMI CAYNNNNRTG 1 cut(s) 1903
Sse9I AATT 9 cut(s) 64, 153, 217, 1180, 1464, 1471, 1512, 1868, 1888
SseBI AGGCCT 1 cut(s) 1551
SsiI CCGC 7 cut(s) 253, 452, 693, 881, 915, 956, 1225
SspI AATATT 2 cut(s) 403, 1368
SspMI CTAG 3 cut(s) 111, 648, 1347
StuI AGGCCT 1 cut(s) 1551
StyD4I CCNGG 1 cut(s) 1551
TaaI ACNGT 2 cut(s) 598, 1246
TaiI ACGT 2 cut(s) 941, 1341
TaqI TCGA 1 cut(s) 1614
TasI AATT 9 cut(s) 64, 153, 217, 1180, 1464, 1471, 1512, 1868, 1888
TatI WGTACW 1 cut(s) 858
TauI GCSGC 2 cut(s) 455, 959
TfiI GAWTC 3 cut(s) 259, 814, 1585
TscAI CASTG 4 cut(s) 166, 558, 590, 997
TseFI GTSAC 3 cut(s) 934, 1764, 1882
TseI GCWGC 2 cut(s) 1440, 1443
Tsp45I GTSAC 3 cut(s) 934, 1764, 1882
TspGWI ACGGA 1 cut(s) 1516
TspRI CASTG 4 cut(s) 166, 558, 590, 997
VpaK11BI GGWCC 1 cut(s) 1522
VspI ATTAAT 2 cut(s) 621, 1482
XapI RAATTY 3 cut(s) 64, 1464, 1888
XmnI GAANNNNTTC 3 cut(s) 237, 1419, 1737
XspI CTAG 3 cut(s) 111, 648, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.