Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Reverse (-)

51329097 .. 51335855

Gene Structure 6759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCATCCTCTGCAAGAACTGCTGCTTCAAAATGCAAGTTACCACCTTTATCCACGAACCCAGAAAGACCCACATCTTCAAATTCCCACAGCTCAACCAAGCTTTCATCTTTCTTCACAAACCAAGCTAGTAGTAATACCGCTATACCCACTTCTTCAAATCCCAAAACTTCACCAAAAAACCCATTTCCTAGAGCTCCAATCCAAACCCCACTTGAGAAGTTCCTCCAAGCAAACTGTAAGTCAGGTAACATCACTCTCAGTGAAGCACTTGACTATTTTGACCACATGATTCATATGCGACCTCCTCCTCCAATGTCATCATTCAATCGTTTATTAGGTGGACTTGTCAAGAGTCTTCTCAAGCCTTTTGTTGGATTCCTTTTTCATGATGGGCACAAATATTTCTCAACTGATGTGCAGGCTGGCAAATTTGAGTCTGGGCAGCTTGGGAAAACTGCTGCAACTGAACAAAAACCCCATTCTTTGCATTTACTACTTGTTCTTATTAGAACCTTATTTTCATTGACCTATTCGCCGTGGGTCTTGGAGGATGAGACTGGACGGTCCAAGTTCCAGGGCCATCTTCAAGAATTCTTTTCAGCTTACTACCTACTAATGCAAGAAGGAGAGGAGATTTCTGCTGTTCCTGTGAACAACTTTGGGAGCAAGCATAGCAAACAAAAAACTTGTTTTGATGATGATGATGATGAAGGGAACATCTCAGATAATGATGATGAGGAACAAGAGGGAGCAAGGAAAAATAGACTTGGACTCAAGAGAAGAGATGGTGATGATGAAGGAAACATCTCAGATAATAGTGATGAGGAAGAAGATGTAGCAAGGAAAAACAGACTTGAACTTGAGAGAATAGGTGGCGATGATGAAGATACAAGTGGAGATGATGACTTTGATAATGATGATAGTGAGAAGGATGATGACTGGAAGCTTGAGGAGATTTTTAGCGATGATGATGAAAATAATACCAAGGAAATAGAAGACTTTGCAACTGAGGTTCCAGTTCCACAAGAACTTACGCATTTGACATGTTTGTTTAATATGAGGTTTCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

358

Amino Acids

40.26

Weight (kDa)

4.69

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AciI	CCGC	1 cut(s)	141
AcsI	RAATTY	3 cut(s)	82, 431, 593
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	1046
AgsI	TTSAA	6 cut(s)	30, 81, 159, 328, 590, 860
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	7 cut(s)	93, 103, 128, 197, 448, 605, 949
AluI	AGCT	7 cut(s)	93, 103, 128, 197, 448, 605, 949
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	551
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	23, 445, 461
ApoI	RAATTY	3 cut(s)	82, 431, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	2 cut(s)	567, 580
AsuHPI	GGTGA	2 cut(s)	165, 803
AvaII	GGWCC	1 cut(s)	567
BaeGI	GKGCMC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	350, 1005
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	10, 448, 457
BccI	CCATC	3 cut(s)	386, 591, 782
BceAI	ACGGC	1 cut(s)	523
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	129, 192
BisI	GCNGC	3 cut(s)	24, 446, 462
BlsI	GCNGC	3 cut(s)	25, 447, 463
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	567, 580
BmiI	GGNNCC	1 cut(s)	1017
BmrFI	CCNGG	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	350, 1005
BpuEI	CTTGAG	5 cut(s)	236, 347, 761, 884, 971
BsaJI	CCNNGG	3 cut(s)	539, 577, 987
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	3 cut(s)	565, 947, 1019
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	539, 577, 987
BseGI	GGATG	3 cut(s)	5, 559, 940
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	4 cut(s)	274, 738, 825, 1002
BseNI	ACTGG	3 cut(s)	565, 947, 1019
BseRI	GAGGAG	4 cut(s)	297, 300, 647, 968
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	10, 448, 457
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	582
Bsp1286I	GDGCHC	2 cut(s)	199, 399
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	4 cut(s)	273, 737, 824, 1003
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	565, 947, 1019
BssECI	CCNNGG	3 cut(s)	539, 577, 987
BssT1I	CCWWGG	1 cut(s)	987
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	239, 567
Bst6I	CTCTTC	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	423, 427, 671
BstDEI	CTNAG	4 cut(s)	260, 724, 811, 1011
BstDSI	CCRYGG	1 cut(s)	539
BstF5I	GGATG	3 cut(s)	5, 559, 940
BstMAI	GTCTC	1 cut(s)	551
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 675
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	1050
BstSCI	CCNGG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	10, 448, 457
BstV2I	GAAGAC	2 cut(s)	350, 1005
BsuRI	GGCC	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	539
BtgZI	GCGATG	2 cut(s)	894, 981
BtsCI	GGATG	3 cut(s)	5, 559, 940
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	423, 427, 671
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	567, 580
CviAII	CATG	3 cut(s)	289, 389, 1047
DdeI	CTNAG	4 cut(s)	260, 724, 811, 1011
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	987
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	987
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	987
FaeI	CATG	3 cut(s)	292, 392, 1050
FaiI	YATR	8 cut(s)	146, 290, 297, 299, 390, 675, 1048, 1061
FatI	CATG	3 cut(s)	288, 388, 1046
FauNDI	CATATG	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	24, 446, 462
FokI	GGATG	2 cut(s)	566, 947
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	24, 446, 462
FspBI	CTAG	2 cut(s)	129, 192
GluI	GCNGC	3 cut(s)	24, 446, 462
HaeIII	GGCC	1 cut(s)	582
Hin1II	CATG	3 cut(s)	292, 392, 1050
HindIII	AAGCTT	2 cut(s)	101, 947
HinfI	GANTC	5 cut(s)	292, 355, 378, 437, 774
HphI	GGTGA	2 cut(s)	165, 803
Hpy166II	GTNNAC	2 cut(s)	344, 655
Hpy188I	TCNGA	2 cut(s)	727, 814
Hpy188III	TCNNGA	4 cut(s)	352, 389, 590, 778
Hpy8I	GTNNAC	2 cut(s)	344, 655
HpyAV	CCTTC	4 cut(s)	620, 707, 794, 925
HpyCH4III	ACNGT	2 cut(s)	239, 567
HpyCH4V	TGCA	7 cut(s)	14, 36, 421, 464, 490, 622, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 675
HpyF3I	CTNAG	4 cut(s)	260, 724, 811, 1011
Hsp92II	CATG	3 cut(s)	292, 392, 1050
LmnI	GCTCC	3 cut(s)	202, 666, 752
Lsp1109I	GCAGC	3 cut(s)	10, 448, 457
MaeI	CTAG	2 cut(s)	129, 192
MaeIII	GTNAC	2 cut(s)	39, 248
MhlI	GDGCHC	2 cut(s)	199, 399
MluCI	AATT	3 cut(s)	82, 431, 593
MlyI	GAGTC	3 cut(s)	364, 446, 768
MmeI	TCCRAC	1 cut(s)	355
MseI	TTAA	1 cut(s)	1056
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	20, 675
NdeI	CATATG	1 cut(s)	297
NlaIII	CATG	3 cut(s)	292, 392, 1050
NlaIV	GGNNCC	1 cut(s)	1017
NspI	RCATGY	1 cut(s)	1050
PagI	TCATGA	1 cut(s)	388
PciI	ACATGT	1 cut(s)	1046
PfeI	GAWTC	2 cut(s)	292, 378
PkrI	GCNGC	3 cut(s)	25, 447, 463
PleI	GAGTC	3 cut(s)	363, 445, 768
PpsI	GAGTC	3 cut(s)	363, 445, 768
PscI	ACATGT	1 cut(s)	1046
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	1017
PspPI	GGNCC	2 cut(s)	567, 580
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	1056
SatI	GCNGC	3 cut(s)	24, 446, 462
Sau96I	GGNCC	2 cut(s)	567, 580
SchI	GAGTC	3 cut(s)	364, 446, 768
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	2 cut(s)	199, 399
SinI	GGWCC	1 cut(s)	567
SmlI	CTYRAG	5 cut(s)	215, 362, 776, 863, 950
SmoI	CTYRAG	5 cut(s)	215, 362, 776, 863, 950
Sse9I	AATT	3 cut(s)	82, 431, 593
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	2 cut(s)	129, 192
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	2 cut(s)	239, 567
TasI	AATT	3 cut(s)	82, 431, 593
TfiI	GAWTC	2 cut(s)	292, 378
Tru1I	TTAA	1 cut(s)	1056
Tru9I	TTAA	1 cut(s)	1056
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	3 cut(s)	23, 445, 461
TspDTI	ATGAA	8 cut(s)	96, 284, 377, 513, 726, 813, 900, 990
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	567
XapI	RAATTY	3 cut(s)	82, 431, 593
XceI	RCATGY	1 cut(s)	1050
XspI	CTAG	2 cut(s)	129, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.