FvH4_2g24450

Aldo-keto reductase-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006387
Physical Location & Seq
Forward (+)
19948203 .. 19951558
3356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24450.t2

Sequence Viewer

Length: 774 bp
ATGGACCCAAGTGCTTGGATGCTGGGAATATCACTGCGGCTATTGAGGGCAGTTTACGGCGATTGCAGACGGATTACATTGATCTTTATCAGATACATTGGCCTGATCGGTTTATATGTCCCGATGTTTGGAGAAAATGAATATGATCCAACTAGGCAATTTGGTTCGATTCCAATAGAGGAACAGCTTGATGCTCTTGGTAGAGCTGTTGATGCTGGTAAGGTCAGATATGTTGGTCTCAGTAATGAAACAGCATATGGTGTAATGAAGTTTCTTCAGGTGGCAGAAAGAGGCACTGGCATTCCAAAGATTGTATCTGTGCAGAACTCATACAGCTTGCTATGTCGAACTTTTGATTCTGGATTGGCTGAGTGCTGTCATCATGAAAGGGTCAGTTTATTAGCTTACAGCCCTCTTGCAATGGGTATACTCTCTGGGAAGTACTTTTCACCGGAAGGGGGCCCTTCAGATGCTCGGTTGAACCTTTTCAGAGGAAAGTATTCAGAAGGGGAGTCTAGATACAACTTGTCTGATCCCTCCATAAGAGCAGCAAGCATGGAGTACATTCATATTGCAGAAAAGCACGGCCTACATCCAGTATCTCTTGCAATTGCCTTCGTGTTGAGTCACCCTCTGGTAGCAAGTGTCGTCTTTGGAGTAACCCAGTCATGGCAACTTCAGGAAGTTCTTGATGCATGCAAGGTGGAGCTCACACCTGAGATAGTTGTGGAAATCAACAAGGTTCACAAAAGGTTTCCTAATCCCTGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

258

Amino Acids

28.5

Weight (kDa)

6.66

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 16 - 348 7e-70 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 427
AciI CCGC 1 cut(s) 37
AclWI GGATC 2 cut(s) 140, 527
AcuI CTGAAG 3 cut(s) 260, 450, 662
AfaI GTAC 2 cut(s) 443, 563
AfiI CCNNNNNNNGG 3 cut(s) 128, 458, 669
AgsI TTSAA 1 cut(s) 481
AluBI AGCT 5 cut(s) 187, 206, 336, 404, 709
AluI AGCT 5 cut(s) 187, 206, 336, 404, 709
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 2 cut(s) 140, 527
AoxI GGCC 3 cut(s) 100, 460, 586
ApaI GGGCCC 1 cut(s) 464
ApeKI GCWGC 1 cut(s) 548
Asp700I GAANNNNTTC 2 cut(s) 485, 499
AspS9I GGNCC 3 cut(s) 4, 460, 461
AsuHPI GGTGA 2 cut(s) 441, 620
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 464
BanII GRGCYC 2 cut(s) 464, 711
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 560
BceAI ACGGC 2 cut(s) 73, 601
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 2 cut(s) 153, 516
BisI GCNGC 2 cut(s) 38, 549
BlsI GCNGC 2 cut(s) 39, 550
BmcAI AGTACT 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 3 cut(s) 4, 460, 461
BmiI GGNNCC 3 cut(s) 6, 461, 462
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 5 cut(s) 9, 181, 202, 460, 682
BmuI ACTGGG 1 cut(s) 658
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BsaBI GATNNNNATC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 458, 669
Bse1I ACTGG 3 cut(s) 301, 596, 664
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 86
BseGI GGATG 2 cut(s) 24, 592
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 128, 458, 669
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 3 cut(s) 253, 360, 708
BseNI ACTGG 3 cut(s) 301, 596, 664
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 1 cut(s) 560
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 341
BshFI GGCC 3 cut(s) 102, 462, 588
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 2 cut(s) 104, 753
BslI CCNNNNNNNGG 3 cut(s) 128, 458, 669
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 104, 753
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 3 cut(s) 102, 462, 588
Bso31I GGTCTC 1 cut(s) 242
Bsp120I GGGCCC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 464, 711
Bsp143I GATC 4 cut(s) 81, 105, 145, 532
BspACI CCGC 1 cut(s) 37
BspANI GGCC 3 cut(s) 102, 462, 588
BspCNI CTCAG 3 cut(s) 252, 361, 709
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 6, 461, 462
BspPI GGATC 2 cut(s) 140, 527
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 301, 596, 664
BssMI GATC 4 cut(s) 81, 105, 145, 532
BssNAI GTATAC 1 cut(s) 428
Bst1107I GTATAC 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 338, 553, 697
BstDEI CTNAG 3 cut(s) 239, 369, 717
BstF5I GGATG 2 cut(s) 24, 592
BstKTI GATC 4 cut(s) 84, 108, 148, 535
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 4 cut(s) 81, 105, 145, 532
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 699
BstSLI GKGCMC 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 428
BsuRI GGCC 3 cut(s) 102, 462, 588
BtsCI GGATG 2 cut(s) 24, 592
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 32, 294
Cac8I GCNNGC 3 cut(s) 338, 553, 697
CciI TCATGA 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 4, 460, 461
Csp6I GTAC 2 cut(s) 442, 562
CviAII CATG 4 cut(s) 383, 556, 669, 696
CviQI GTAC 2 cut(s) 442, 562
DdeI CTNAG 3 cut(s) 239, 369, 717
DpnI GATC 4 cut(s) 83, 107, 147, 534
DpnII GATC 4 cut(s) 81, 105, 145, 532
Ecl136II GAGCTC 1 cut(s) 709
Eco24I GRGCYC 2 cut(s) 464, 711
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 3 cut(s) 260, 450, 662
EcoICRI GAGCTC 1 cut(s) 709
EcoO109I RGGNCCY 2 cut(s) 460, 461
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 2 cut(s) 464, 711
FaeI CATG 4 cut(s) 386, 559, 672, 699
FaqI GGGAC 2 cut(s) 104, 753
FatI CATG 4 cut(s) 382, 555, 668, 695
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 38, 549
FokI GGATG 2 cut(s) 31, 579
FriOI GRGCYC 2 cut(s) 464, 711
Fsp4HI GCNGC 2 cut(s) 38, 549
FspBI CTAG 2 cut(s) 153, 516
GluI GCNGC 2 cut(s) 38, 549
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 3 cut(s) 102, 462, 588
HapII CCGG 1 cut(s) 452
Hin1II CATG 4 cut(s) 386, 559, 672, 699
HinfI GANTC 4 cut(s) 169, 356, 512, 625
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 441, 620
Hpy166II GTNNAC 3 cut(s) 55, 428, 745
Hpy188I TCNGA 6 cut(s) 92, 227, 469, 491, 505, 532
Hpy188III TCNNGA 6 cut(s) 121, 360, 383, 516, 680, 689
Hpy8I GTNNAC 3 cut(s) 55, 428, 745
HpyAV CCTTC 4 cut(s) 449, 474, 500, 625
HpyCH4V TGCA 7 cut(s) 66, 322, 419, 575, 608, 695, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 3 cut(s) 239, 369, 717
Hsp92II CATG 4 cut(s) 386, 559, 672, 699
Kzo9I GATC 4 cut(s) 81, 105, 145, 532
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 5 cut(s) 9, 181, 202, 460, 682
MaeI CTAG 2 cut(s) 153, 516
MaeIII GTNAC 2 cut(s) 626, 658
MalI GATC 4 cut(s) 83, 107, 147, 534
MboI GATC 4 cut(s) 81, 105, 145, 532
MboII GAAGA 1 cut(s) 266
MfeI CAATTG 1 cut(s) 609
MhlI GDGCHC 2 cut(s) 464, 711
MluCI AATT 2 cut(s) 158, 609
MlyI GAGTC 2 cut(s) 521, 634
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 7 cut(s) 39, 172, 284, 423, 485, 547, 642
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 2 cut(s) 485, 499
MspI CCGG 1 cut(s) 452
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeI CATATG 1 cut(s) 256
NdeII GATC 4 cut(s) 81, 105, 145, 532
NlaIII CATG 4 cut(s) 386, 559, 672, 699
NlaIV GGNNCC 3 cut(s) 6, 461, 462
NmuCI GTSAC 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 1 cut(s) 699
PaeI GCATGC 1 cut(s) 699
PagI TCATGA 1 cut(s) 382
PctI GAATGC 1 cut(s) 300
PdmI GAANNNNTTC 2 cut(s) 485, 499
PfeI GAWTC 2 cut(s) 169, 356
PkrI GCNGC 2 cut(s) 39, 550
PleI GAGTC 2 cut(s) 520, 633
PpsI GAGTC 2 cut(s) 520, 633
Psp124BI GAGCTC 1 cut(s) 711
PspFI CCCAGC 1 cut(s) 22
PspN4I GGNNCC 3 cut(s) 6, 461, 462
PspOMI GGGCCC 1 cut(s) 460
PspPI GGNCC 3 cut(s) 4, 460, 461
RsaI GTAC 2 cut(s) 443, 563
RsaNI GTAC 2 cut(s) 442, 562
SacI GAGCTC 1 cut(s) 711
SatI GCNGC 2 cut(s) 38, 549
Sau3AI GATC 4 cut(s) 81, 105, 145, 532
Sau96I GGNCC 3 cut(s) 4, 460, 461
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 2 cut(s) 521, 634
SduI GDGCHC 2 cut(s) 464, 711
SfaNI GCATC 5 cut(s) 9, 181, 202, 460, 682
SinI GGWCC 1 cut(s) 4
SphI GCATGC 1 cut(s) 699
Sse9I AATT 2 cut(s) 158, 609
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 153, 516
SstI GAGCTC 1 cut(s) 711
TaqI TCGA 2 cut(s) 167, 346
TasI AATT 2 cut(s) 158, 609
TatI WGTACW 2 cut(s) 441, 561
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 169, 356
TscAI CASTG 2 cut(s) 39, 301
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 5 cut(s) 153, 261, 281, 399, 557
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 39, 301
VpaK11BI GGWCC 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 2 cut(s) 485, 499
XspI CTAG 2 cut(s) 153, 516
ZrmI AGTACT 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.