Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002993.1

Orthogroup ID

OG0006387

Physical Location & Seq

Genomic Coordinates Forward (+)

64498 .. 67319

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002993.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggcggtgccggtcttcaacctcgctccgaatctgatggtttcaaggctgtgcttgggaaccatgactttcggcgagcagaacacgctgccggagtcctttcgcctcctcgaccaagctttcaacgctggaatcaacttgttcgactctgcggagatgtacccggtggttcagcgagcggacactcggggcaggagcgaggagtatctcggccgttggattagagagcgcaacattcctcgagacagcgtcgttttggccaccaaggtgaccggaccatccgggcagatgacttggataagagatggccccgagtgtttggatgctgcgaatatcactgaggccattgacagcagtctacggcgattgcagacggattacattgatctttatcagatacactggcctgatcgatatgttccgatgtttggagaaactgaatatgatccaaccaggcaatttggttcgattcctatagaggaacaacttgacgctcttgggagagctgttgattctggtaaggtcagatatgttggtctcagtaatgaaacggcatatggtgtgatgaagtttcttcaggtggctgaaagaggcactcaccttccaaagattgtatctgtgcagaattcatacagcttgctatgtcgaacttttgattctggattagctgaatgctgtcatcatgagagggtcagtttattagcttacagccctcttgcaatgggtatactctctgggaagtatttttcaccggaaggcggtccttcagatgctcggttgaacattttcagaggaaagtattcagaaggggagtccagatacaacttgtctaatccctccataagggcagcaagcatggaatacattcatattgcagaaaagtacggcattcatccagtatctcttgcaattgcctttgttttgagtcaccctctggtagcgagtatcgtctttggagcaacccagtcatggcaacttcaggaagttcttgatgcatgcaaggtggagctcacatccgaagtaatggtagaagtcaacaaggttcaccaaagatttcctaacccttgtccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

357

Amino Acids

39.93

Weight (kDa)

5.57

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450
malus_domestica	MD03G1274000.v1.1 MD11G1296300.v1.1
prunus_persica	Prupe.1G022700_v2.0.a1 Prupe.3G229100_v2.0.a1 Prupe.3G229200_v2.0.a1 Prupe.7G125500_v2.0.a1 Prupe.8G162600_v2.0.a1 Prupe.8G250200_v2.0.a1
pyrus_communis	pycom03g21820
rosa_chinensis	RchiOBHm_Chr6g0292291
rosa_laevigata	RLG00000012045 RLG00000029263
rosa_multiflora	Rmu_sc0002993.1_g000019 Rmu_sc0041965.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175240
rosa_rugosa	Rorug06G0225200
rosa_samantha	Rh6AG338600 Rh6BG345700 Rh6CG352800 Rh6DG338600
rosa_wichuraiana	Rw6G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	358, 727
AciI	CCGC	4 cut(s)	5, 152, 179, 759
AclWI	GGATC	1 cut(s)	440
AcoI	YGGCCR	2 cut(s)	211, 258
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	3 cut(s)	560, 750, 962
AfaI	GTAC	2 cut(s)	161, 884
AfiI	CCNNNNNNNGG	4 cut(s)	428, 758, 843, 969
AgsI	TTSAA	4 cut(s)	19, 45, 124, 781
AjnI	CCWGG	1 cut(s)	452
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	119, 506, 636, 668, 704, 1009
AluI	AGCT	6 cut(s)	119, 506, 636, 668, 704, 1009
Alw21I	GWGCWC	1 cut(s)	1011
Alw26I	GTCTC	2 cut(s)	237, 542
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	3 cut(s)	186, 240, 311
AoxI	GGCC	5 cut(s)	211, 258, 307, 342, 404
ApeKI	GCWGC	3 cut(s)	88, 326, 848
ApoI	RAATTY	1 cut(s)	625
Asp700I	GAANNNNTTC	3 cut(s)	785, 799, 864
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	275, 308, 761
AsuC2I	CCSGG	2 cut(s)	164, 283
AsuHPI	GGTGA	5 cut(s)	280, 590, 741, 920, 1037
AvaI	CYCGRG	3 cut(s)	186, 240, 311
AvaII	GGWCC	2 cut(s)	275, 761
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	1011
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	1011
BbvI	GCAGC	3 cut(s)	75, 313, 860
BccI	CCATC	3 cut(s)	31, 286, 299
BceAI	ACGGC	4 cut(s)	198, 377, 567, 901
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	2 cut(s)	164, 283
BcoDI	GTCTC	2 cut(s)	237, 542
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	3 cut(s)	89, 327, 849
BlsI	GCNGC	3 cut(s)	90, 328, 850
Bme1390I	CCNGG	3 cut(s)	164, 283, 454
Bme18I	GGWCC	2 cut(s)	275, 761
BmeT110I	CYCGRG	3 cut(s)	186, 240, 311
BmgT120I	GGNCC	3 cut(s)	275, 308, 761
BmiI	GGNNCC	3 cut(s)	9, 61, 310
BmrFI	CCNGG	3 cut(s)	164, 283, 454
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	3 cut(s)	313, 760, 982
BmuI	ACTGGG	1 cut(s)	958
BoxI	GACNNNNGTC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	916, 948
BpuMI	CCSGG	2 cut(s)	164, 283
Bsa29I	ATCGAT	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	2 cut(s)	272, 751
Bsc4I	CCNNNNNNNGG	4 cut(s)	428, 758, 843, 969
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	3 cut(s)	407, 896, 964
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	4 cut(s)	278, 328, 892, 1013
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	428, 758, 843, 969
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	330, 553
BseNI	ACTGG	3 cut(s)	407, 896, 964
BseRI	GAGGAG	2 cut(s)	98, 215
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	75, 313, 860
BsgI	GTGCAG	1 cut(s)	641
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	5 cut(s)	213, 260, 309, 344, 406
BshNI	GGYRCC	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	1011
BsiHKCI	CYCGRG	3 cut(s)	186, 240, 311
BsiSI	CCGG	6 cut(s)	11, 92, 164, 273, 282, 752
BslFI	GGGAC	1 cut(s)	1053
BslI	CCNNNNNNNGG	4 cut(s)	428, 758, 843, 969
BsmAI	GTCTC	2 cut(s)	237, 542
BsmFI	GGGAC	1 cut(s)	1053
BsmI	GAATGC	2 cut(s)	677, 888
BsnI	GGCC	5 cut(s)	213, 260, 309, 344, 406
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	3 cut(s)	186, 240, 311
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp143I	GATC	3 cut(s)	385, 409, 445
BspACI	CCGC	4 cut(s)	5, 152, 179, 759
BspANI	GGCC	5 cut(s)	213, 260, 309, 344, 406
BspCNI	CTCAG	2 cut(s)	331, 552
BspDI	ATCGAT	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	9, 61, 310
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	542
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	3 cut(s)	407, 896, 964
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	385, 409, 445
BssNAI	GTATAC	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	454
BstC8I	GCNNGC	5 cut(s)	77, 177, 638, 853, 997
BstDEI	CTNAG	2 cut(s)	339, 539
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	841
BstF5I	GGATG	4 cut(s)	278, 328, 892, 1013
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	388, 412, 448
BstMAI	GTCTC	2 cut(s)	237, 542
BstMBI	GATC	3 cut(s)	385, 409, 445
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 125
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	999
BstPAI	GACNNNNGTC	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	162, 281, 452
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	75, 313, 860
BstV2I	GAAGAC	1 cut(s)	7
BstZ17I	GTATAC	1 cut(s)	728
BstZI	CGGCCG	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	412
BsuRI	GGCC	5 cut(s)	213, 260, 309, 344, 406
BsuTUI	ATCGAT	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	278, 328, 892, 1013
BtsIMutI	CAGTG	2 cut(s)	336, 400
Cac8I	GCNNGC	5 cut(s)	77, 177, 638, 853, 997
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	275, 308, 761
ClaI	ATCGAT	1 cut(s)	412
CseI	GACGC	2 cut(s)	238, 500
Csp6I	GTAC	2 cut(s)	160, 883
CviAII	CATG	5 cut(s)	64, 683, 856, 969, 996
CviQI	GTAC	2 cut(s)	160, 883
DdeI	CTNAG	2 cut(s)	339, 539
DpnI	GATC	3 cut(s)	387, 411, 447
DpnII	GATC	3 cut(s)	385, 409, 445
EaeI	YGGCCR	2 cut(s)	211, 258
EagI	CGGCCG	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	1009
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	1011
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	275, 761
Eco52I	CGGCCG	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	1009
Eco57I	CTGAAG	3 cut(s)	560, 750, 962
Eco88I	CYCGRG	3 cut(s)	186, 240, 311
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	1009
EcoNI	CCTNNNNNAGG	1 cut(s)	841
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	1 cut(s)	1011
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	5 cut(s)	67, 686, 859, 972, 999
FaqI	GGGAC	1 cut(s)	1053
FatI	CATG	5 cut(s)	63, 682, 855, 968, 995
FauNDI	CATATG	1 cut(s)	556
FblI	GTMKAC	2 cut(s)	358, 727
Fnu4HI	GCNGC	3 cut(s)	89, 327, 849
FokI	GGATG	4 cut(s)	265, 335, 879, 1000
FriOI	GRGCYC	1 cut(s)	1011
Fsp4HI	GCNGC	3 cut(s)	89, 327, 849
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	3 cut(s)	89, 327, 849
HaeIII	GGCC	5 cut(s)	213, 260, 309, 344, 406
HapII	CCGG	6 cut(s)	11, 92, 164, 273, 282, 752
HgaI	GACGC	2 cut(s)	238, 500
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	67, 686, 859, 972, 999
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	9 cut(s)	31, 95, 132, 146, 469, 512, 656, 812, 925
HpaII	CCGG	6 cut(s)	11, 92, 164, 273, 282, 752
HphI	GGTGA	5 cut(s)	280, 590, 741, 920, 1037
Hpy166II	GTNNAC	4 cut(s)	359, 728, 1036, 1045
Hpy188I	TCNGA	9 cut(s)	30, 36, 396, 423, 527, 769, 791, 805, 1018
Hpy188III	TCNNGA	6 cut(s)	242, 660, 683, 816, 980, 989
Hpy8I	GTNNAC	4 cut(s)	359, 728, 1036, 1045
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	611, 749, 774, 800
HpyCH4V	TGCA	7 cut(s)	370, 622, 719, 875, 908, 995, 999
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 125
HpyF3I	CTNAG	2 cut(s)	339, 539
Hsp92II	CATG	5 cut(s)	67, 686, 859, 972, 999
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	385, 409, 445
LmnI	GCTCC	4 cut(s)	31, 195, 956, 1006
Lsp1109I	GCAGC	3 cut(s)	75, 313, 860
LweI	GCATC	3 cut(s)	313, 760, 982
MaeIII	GTNAC	2 cut(s)	268, 926
MalI	GATC	3 cut(s)	387, 411, 447
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	3 cut(s)	385, 409, 445
MboII	GAAGA	2 cut(s)	7, 566
MfeI	CAATTG	1 cut(s)	909
MhlI	GDGCHC	1 cut(s)	1011
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	3 cut(s)	458, 625, 909
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	4 cut(s)	104, 140, 821, 934
MmeI	TCCRAC	2 cut(s)	197, 473
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	997
MroXI	GAANNNNTTC	3 cut(s)	785, 799, 864
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	6 cut(s)	11, 92, 164, 273, 282, 752
MspR9I	CCNGG	3 cut(s)	164, 283, 454
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	2 cut(s)	677, 888
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	85, 125
NciI	CCSGG	2 cut(s)	164, 283
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	3 cut(s)	385, 409, 445
NlaIII	CATG	5 cut(s)	67, 686, 859, 972, 999
NlaIV	GGNNCC	3 cut(s)	9, 61, 310
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	268, 926
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	1 cut(s)	999
OliI	CACNNNNGTG	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	999
PaeR7I	CTCGAG	1 cut(s)	240
PagI	TCATGA	1 cut(s)	682
PctI	GAATGC	2 cut(s)	677, 888
PdmI	GAANNNNTTC	3 cut(s)	785, 799, 864
PfeI	GAWTC	5 cut(s)	31, 132, 469, 512, 656
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	90, 328, 850
PleI	GAGTC	4 cut(s)	103, 140, 820, 933
PpsI	GAGTC	4 cut(s)	103, 140, 820, 933
PshAI	GACNNNNGTC	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	1011
Psp6I	CCWGG	1 cut(s)	452
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	9, 61, 310
PspPI	GGNCC	3 cut(s)	275, 308, 761
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	161, 884
RsaNI	GTAC	2 cut(s)	160, 883
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	1011
SatI	GCNGC	3 cut(s)	89, 327, 849
Sau3AI	GATC	3 cut(s)	385, 409, 445
Sau96I	GGNCC	3 cut(s)	275, 308, 761
SchI	GAGTC	4 cut(s)	104, 140, 821, 934
ScrFI	CCNGG	3 cut(s)	164, 283, 454
SduI	GDGCHC	1 cut(s)	1011
SfaNI	GCATC	3 cut(s)	313, 760, 982
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	275, 761
SlaI	CTCGAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	999
Sse9I	AATT	3 cut(s)	458, 625, 909
SsiI	CCGC	4 cut(s)	5, 152, 179, 759
SstI	GAGCTC	1 cut(s)	1011
StyD4I	CCNGG	3 cut(s)	162, 281, 452
StyI	CCWWGG	1 cut(s)	264
TaqI	TCGA	6 cut(s)	111, 144, 241, 412, 467, 646
TasI	AATT	3 cut(s)	458, 625, 909
TfiI	GAWTC	5 cut(s)	31, 132, 469, 512, 656
TscAI	CASTG	2 cut(s)	343, 407
TseFI	GTSAC	2 cut(s)	268, 926
TseI	GCWGC	3 cut(s)	88, 326, 848
Tsp45I	GTSAC	2 cut(s)	268, 926
TspDTI	ATGAA	5 cut(s)	561, 581, 618, 857, 881
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	343, 407
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	275, 761
XagI	CCTNNNNNAGG	1 cut(s)	841
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	999
XhoI	CTCGAG	1 cut(s)	240
XmiI	GTMKAC	2 cut(s)	358, 727
XmnI	GAANNNNTTC	3 cut(s)	785, 799, 864
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.