RLG00000029263

Receptor-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006387
Physical Location & Seq
Forward (+)
35613429 .. 35618002
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029263

Sequence Viewer

Length: 1233 bp
ATGGAGTCATTAGTGATAGAGTTGCCAACCTTCCTAATCTCTCAATCCTTGACCTATATTTTGAGCGGTGTGCTTCCTTTCCATTTTAGCAAGCTCTCCAAGTTGAAACTTATGCTCCTTCATTTTAACAGTCTTGAAGACGAGGAAAGTCTAGCTGATTTTGGCATGGCCAATTTTAGTGGATTCCAAAATCTTCGATTTTTGGATACGTCTAATTGTGGGCTCACTGGACAGATCCCATTGTACTCCAATCTAATTATGGGTCAATTTCCAAAAGAACTTTGCAGACTGCCAATGTTGACATTGAACCAAACCATAGCTAAACTTGATGATGATGGCTATCTTACATTACCTTTACATGATGGTGAAACTGGTAATCAGTTGAACTCTTTGCGTTACTTACCTCGAGCGATAGACCTGGGTAGTAATAATCTGAGTGGAATTATTCCCAACGAGATTGGTCAACTACAGCTTTTGCGAGACTTATACCTTACGTCCAACGATTTCTCGGGTAACATTCCGGACCAAATATCTCACTTGAAAAGCTTAGAGATTTTGGATCTTTCCATGAATCGTTTGTCTGGAGAAATCCCTGGTTCATTGGCGAGTCTTAAACTTTTGTCATATTTTAATGTCTCCTATAATAATCTGGAAGGACCAATACCCAAAAGCACTCAGCTCCAGAGCTTAAGTGCCTCTGCATTTGAGGGGAATCTGGAATTTTGTGGTCGTCCACTTCCAAATGAGTGTGGAGCAACTAAAGCGCCAACGGAGCTCAGTGAGTTTTTGAGGCGACCCAATGGCGGTGTCGGTCTTCAACCTTGCTCCGAATCTGATGGTTTCAAGGCTGTGCTTGGGTTCGAATCTATTTCTTTGTCTAGTATTGTCATTAGTCTTTGCATGAATTTTGGCGGGCAAAACACGATGCTAGAGTCCTTCCGCCTCCTCAACCAAGCTTTCAACGCTGGAATCAACTTCTTCGACTCTGCGGAGATGTACCAGGTGGTTCAGCGAGCCCATAACTCACTCTCATCCTTCCTGCCTTCCTTTTGCAACCGGAATCAAATATCAATCACAATCGCAAATGCAGAAATTGCTGGGGGGCACCAAGGCGGTTTTGAGAGGCATGGAGTTTGGTTGAAACCGTTGAGGTGGTGGGTAGTGGGAGCTTGTGAGGAGAGGATCAAAATTAAGAGCCTAGTCGGAGGAGGATGGGAGGAGGGTGTTTCGTAG

Protein Analysis

411

Amino Acids

45.09

Weight (kDa)

5.11

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 136 - 233 6.6e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1104
AccBSI CCGCTC 1 cut(s) 66
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 6 cut(s) 66, 804, 912, 940, 989, 1113
AclWI GGATC 3 cut(s) 229, 567, 1190
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 2 cut(s) 719, 904
AfaI GTAC 2 cut(s) 245, 998
AfiI CCNNNNNNNGG 1 cut(s) 803
AflII CTTAAG 1 cut(s) 688
AgsI TTSAA 9 cut(s) 106, 137, 307, 385, 541, 818, 844, 961, 1141
AjnI CCWGG 3 cut(s) 417, 592, 999
Alw21I GWGCWC 1 cut(s) 777
Alw26I GTCTC 2 cut(s) 474, 640
AlwI GGATC 3 cut(s) 229, 567, 1190
Ama87I CYCGRG 2 cut(s) 405, 508
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 719, 904
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 2 cut(s) 523, 656
AsuHPI GGTGA 1 cut(s) 377
AsuII TTCGAA 1 cut(s) 861
AvaI CYCGRG 2 cut(s) 405, 508
AvaII GGWCC 2 cut(s) 523, 656
BaeGI GKGCMC 1 cut(s) 1107
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 1104
BanII GRGCYC 3 cut(s) 225, 777, 1018
BarI GAAGNNNNNNTAC 2 cut(s) 645, 677
BbsI GAAGAC 2 cut(s) 144, 806
Bbv12I GWGCWC 1 cut(s) 777
BccI CCATC 4 cut(s) 329, 356, 830, 1206
BciT130I CCWGG 3 cut(s) 419, 594, 1001
BciVI GTATCC 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 474, 640
BfaI CTAG 4 cut(s) 152, 879, 929, 1199
BfmI CTRYAG 1 cut(s) 467
BfoI RGCGCY 1 cut(s) 767
BfrI CTTAAG 1 cut(s) 688
BfuI GTATCC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 419, 594, 1001
Bme18I GGWCC 2 cut(s) 523, 656
BmeT110I CYCGRG 2 cut(s) 405, 508
BmgT120I GGNCC 2 cut(s) 523, 656
BmiI GGNNCC 1 cut(s) 1106
BmrFI CCNGG 3 cut(s) 419, 594, 1001
BmsI GCATC 1 cut(s) 915
BpiI GAAGAC 2 cut(s) 144, 806
BpmI CTGGAG 2 cut(s) 603, 665
Bpu14I TTCGAA 1 cut(s) 861
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 418, 592, 1108
BsaWI WCCGGW 2 cut(s) 520, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse1I ACTGG 2 cut(s) 232, 376
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 3 cut(s) 419, 594, 1001
BseDI CCNNGG 3 cut(s) 418, 592, 1108
BseGI GGATG 2 cut(s) 1031, 1217
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 803
BseMII CTCAG 3 cut(s) 425, 689, 790
BseNI ACTGG 2 cut(s) 232, 376
BseRI GAGGAG 4 cut(s) 935, 1190, 1221, 1232
BseSI GKGCMC 1 cut(s) 1107
BseYI CCCAGC 1 cut(s) 1097
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 1104
BsiHKAI GWGCWC 1 cut(s) 777
BsiHKCI CYCGRG 2 cut(s) 405, 508
BsiSI CCGG 2 cut(s) 521, 1057
BslI CCNNNNNNNGG 1 cut(s) 803
BsmAI GTCTC 2 cut(s) 474, 640
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 405, 508
Bsp119I TTCGAA 1 cut(s) 861
Bsp1286I GDGCHC 4 cut(s) 225, 777, 1018, 1107
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 3 cut(s) 234, 559, 1182
BspACI CCGC 6 cut(s) 66, 804, 912, 940, 989, 1113
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 426, 688, 789
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 1106
BspPI GGATC 3 cut(s) 229, 567, 1190
BspT104I TTCGAA 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 1104
BspTI CTTAAG 1 cut(s) 688
BsrBI CCGCTC 1 cut(s) 66
BsrI ACTGG 2 cut(s) 232, 376
BssECI CCNNGG 3 cut(s) 418, 592, 1108
BssMI GATC 3 cut(s) 234, 559, 1182
BssT1I CCWWGG 1 cut(s) 1108
Bst2UI CCWGG 3 cut(s) 419, 594, 1001
Bst4CI ACNGT 2 cut(s) 131, 1146
BstAFI CTTAAG 1 cut(s) 688
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 92, 914, 1014
BstDEI CTNAG 4 cut(s) 434, 547, 675, 776
BstF5I GGATG 2 cut(s) 1031, 1217
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 3 cut(s) 237, 562, 1185
BstMAI GTCTC 2 cut(s) 474, 640
BstMBI GATC 3 cut(s) 234, 559, 1182
BstMWI GCNNNNNNNGC 4 cut(s) 761, 772, 962, 1094
BstNI CCWGG 3 cut(s) 419, 594, 1001
BstSCI CCNGG 3 cut(s) 417, 592, 999
BstSFI CTRYAG 1 cut(s) 467
BstSLI GKGCMC 1 cut(s) 1107
BstV2I GAAGAC 2 cut(s) 144, 806
BstX2I RGATCY 2 cut(s) 234, 559
BstYI RGATCY 2 cut(s) 234, 559
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 1031, 1217
BtsIMutI CAGTG 2 cut(s) 225, 784
Cac8I GCNNGC 3 cut(s) 92, 914, 1014
CfoI GCGC 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 523, 656
CsiI ACCWGGT 1 cut(s) 999
Csp6I GTAC 2 cut(s) 244, 997
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 5 cut(s) 166, 359, 568, 901, 1127
CviQI GTAC 2 cut(s) 244, 997
DdeI CTNAG 4 cut(s) 434, 547, 675, 776
DpnI GATC 3 cut(s) 236, 561, 1184
DpnII GATC 3 cut(s) 234, 559, 1182
EaeI YGGCCR 1 cut(s) 168
EciI GGCGGA 1 cut(s) 929
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 1108
Eco24I GRGCYC 3 cut(s) 225, 777, 1018
Eco47I GGWCC 2 cut(s) 523, 656
Eco53kI GAGCTC 1 cut(s) 775
Eco88I CYCGRG 2 cut(s) 405, 508
EcoICRI GAGCTC 1 cut(s) 775
EcoRII CCWGG 3 cut(s) 417, 592, 999
EcoT14I CCWWGG 1 cut(s) 1108
EcoT38I GRGCYC 3 cut(s) 225, 777, 1018
ErhI CCWWGG 1 cut(s) 1108
FaeI CATG 5 cut(s) 169, 362, 571, 904, 1130
FatI CATG 5 cut(s) 165, 358, 567, 900, 1126
FauI CCCGC 1 cut(s) 905
FokI GGATG 2 cut(s) 1018, 1224
FriOI GRGCYC 3 cut(s) 225, 777, 1018
FspBI CTAG 4 cut(s) 152, 879, 929, 1199
GlaI GCGC 1 cut(s) 765
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 2 cut(s) 603, 665
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 521, 1057
HhaI GCGC 1 cut(s) 766
Hin1II CATG 5 cut(s) 169, 362, 571, 904, 1130
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HincII GTYRAC 2 cut(s) 300, 464
HindII GTYRAC 2 cut(s) 300, 464
HindIII AAGCTT 2 cut(s) 544, 954
HpaII CCGG 2 cut(s) 521, 1057
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 300, 464, 734
Hpy188I TCNGA 4 cut(s) 435, 829, 835, 1205
Hpy188III TCNNGA 6 cut(s) 134, 521, 582, 650, 682, 716
Hpy8I GTNNAC 3 cut(s) 300, 464, 734
HpyAV CCTTC 6 cut(s) 40, 128, 647, 946, 1045, 1053
HpyCH4III ACNGT 2 cut(s) 131, 1146
HpyCH4IV ACGT 2 cut(s) 209, 494
HpyCH4V TGCA 5 cut(s) 285, 701, 900, 1053, 1088
HpyF10VI GCNNNNNNNGC 4 cut(s) 761, 772, 962, 1094
HpyF3I CTNAG 4 cut(s) 434, 547, 675, 776
HpySE526I ACGT 2 cut(s) 209, 494
Hsp92II CATG 5 cut(s) 169, 362, 571, 904, 1130
HspAI GCGC 1 cut(s) 764
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 234, 559, 1182
LmnI GCTCC 6 cut(s) 120, 684, 752, 772, 830, 1166
LweI GCATC 1 cut(s) 915
MabI ACCWGGT 1 cut(s) 999
MaeI CTAG 4 cut(s) 152, 879, 929, 1199
MaeII ACGT 2 cut(s) 209, 494
MaeIII GTNAC 2 cut(s) 395, 512
MalI GATC 3 cut(s) 236, 561, 1184
MbiI CCGCTC 1 cut(s) 66
MboI GATC 3 cut(s) 234, 559, 1182
MboII GAAGA 4 cut(s) 149, 185, 806, 970
MflI RGATCY 2 cut(s) 234, 559
MhlI GDGCHC 4 cut(s) 225, 777, 1018, 1107
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 9 cut(s) 172, 214, 255, 266, 441, 719, 904, 1092, 1188
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 4 cut(s) 14, 616, 941, 977
MmeI TCCRAC 2 cut(s) 522, 1183
Mox20I TGGCCA 1 cut(s) 170
MroI TCCGGA 1 cut(s) 520
MscI TGGCCA 1 cut(s) 170
MseI TTAA 5 cut(s) 126, 612, 630, 689, 1191
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 688
MspI CCGG 2 cut(s) 521, 1057
MspR9I CCNGG 3 cut(s) 419, 594, 1001
MvaI CCWGG 3 cut(s) 419, 594, 1001
MwoI GCNNNNNNNGC 4 cut(s) 761, 772, 962, 1094
NdeII GATC 3 cut(s) 234, 559, 1182
NlaIII CATG 5 cut(s) 169, 362, 571, 904, 1130
NlaIV GGNNCC 1 cut(s) 1106
NspV TTCGAA 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 405
PfeI GAWTC 7 cut(s) 183, 571, 712, 830, 863, 969, 1060
PleI GAGTC 4 cut(s) 13, 615, 940, 977
PpsI GAGTC 4 cut(s) 13, 615, 940, 977
Psp124BI GAGCTC 1 cut(s) 777
Psp6I CCWGG 3 cut(s) 417, 592, 999
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 3 cut(s) 417, 592, 999
PspN4I GGNNCC 1 cut(s) 1106
PspPI GGNCC 2 cut(s) 523, 656
PspXI VCTCGAGB 1 cut(s) 405
PsuI RGATCY 2 cut(s) 234, 559
RsaI GTAC 2 cut(s) 245, 998
RsaNI GTAC 2 cut(s) 244, 997
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 777
SaqAI TTAA 5 cut(s) 126, 612, 630, 689, 1191
Sau3AI GATC 3 cut(s) 234, 559, 1182
Sau96I GGNCC 2 cut(s) 523, 656
SchI GAGTC 4 cut(s) 14, 616, 941, 977
ScrFI CCNGG 3 cut(s) 419, 594, 1001
SduI GDGCHC 4 cut(s) 225, 777, 1018, 1107
SexAI ACCWGGT 1 cut(s) 999
SfaNI GCATC 1 cut(s) 915
SfcI CTRYAG 1 cut(s) 467
Sfr274I CTCGAG 1 cut(s) 405
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 2 cut(s) 523, 656
SlaI CTCGAG 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 405, 688
SmoI CTYRAG 2 cut(s) 405, 688
Sse9I AATT 9 cut(s) 172, 214, 255, 266, 441, 719, 904, 1092, 1188
SsiI CCGC 6 cut(s) 66, 804, 912, 940, 989, 1113
SspMI CTAG 4 cut(s) 152, 879, 929, 1199
SstI GAGCTC 1 cut(s) 777
StyD4I CCNGG 3 cut(s) 417, 592, 999
StyI CCWWGG 1 cut(s) 1108
TaaI ACNGT 2 cut(s) 131, 1146
TaiI ACGT 2 cut(s) 212, 497
TaqI TCGA 4 cut(s) 196, 406, 861, 981
TaqII GACCGA 1 cut(s) 800
TasI AATT 9 cut(s) 172, 214, 255, 266, 441, 719, 904, 1092, 1188
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 7 cut(s) 183, 571, 712, 830, 863, 969, 1060
Tru1I TTAA 5 cut(s) 126, 612, 630, 689, 1191
Tru9I TTAA 5 cut(s) 126, 612, 630, 689, 1191
TscAI CASTG 2 cut(s) 232, 784
TspDTI ATGAA 4 cut(s) 110, 584, 588, 917
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 2 cut(s) 232, 784
Vha464I CTTAAG 1 cut(s) 688
VpaK11BI GGWCC 2 cut(s) 523, 656
XapI RAATTY 2 cut(s) 719, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 405
XspI CTAG 4 cut(s) 152, 879, 929, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.