Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006387

Physical Location & Seq

Genomic Coordinates Forward (+)

1549857 .. 1552003

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTGAAGAAATTGAGTATGATCCAACCCGACAGTTCTGTTCCATTGCTACAGACGAACAACTTGATGCTCTTGGAAGAGCTGTTGATTCTGGTCAGATTAAATATGTTGGTCTCGGTAACGAAACACCATATGGGGTGATGAAGTTTGTTCAGGTGGCTGAAAGGGGCACTCGCCATCCAAAGATTGTCTCTGGAACTCACGCAGCTTGCTCTATCGAACTTTTGATTCTGGGTTGGCTGAATGCTGTCATCATGAGAGGTATTAAAGTGATCAGTTTAGTAGCCTACAGCCCCCTTGCAATGGGTATACTCTCTGGGAAGGAAATATTCGGAGGGGAGTACATTGATATTGCAGGGAATTACAGTGCTCATCCAGTATCTCTTGCAATAGAAACTAGTTTAAAAAGAGACAACAAAAAGAATCGAATTGTTCCAAGGCATATTCAGCTGGCTGTGCGTAACGACGAGGAGTTGAGCAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

163

Amino Acids

17.86

Weight (kDa)

6.42

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450
malus_domestica	MD03G1274000.v1.1 MD11G1296300.v1.1
prunus_persica	Prupe.1G022700_v2.0.a1 Prupe.3G229100_v2.0.a1 Prupe.3G229200_v2.0.a1 Prupe.7G125500_v2.0.a1 Prupe.8G162600_v2.0.a1 Prupe.8G250200_v2.0.a1
pyrus_communis	pycom03g21820
rosa_chinensis	RchiOBHm_Chr6g0292291
rosa_laevigata	RLG00000012045 RLG00000029263
rosa_multiflora	Rmu_sc0002993.1_g000019 Rmu_sc0041965.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175240
rosa_rugosa	Rorug06G0225200
rosa_samantha	Rh6AG338600 Rh6BG345700 Rh6CG352800 Rh6DG338600
rosa_wichuraiana	Rw6G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	8
AhlI	ACTAGT	1 cut(s)	398
AluBI	AGCT	4 cut(s)	83, 209, 451, 484
AluI	AGCT	4 cut(s)	83, 209, 451, 484
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	3 cut(s)	119, 196, 405
AlwI	GGATC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	186
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	3 cut(s)	119, 196, 405
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	51, 289
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmsI	GCATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	2 cut(s)	45, 309
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	178, 373
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	45, 309
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	3 cut(s)	119, 196, 405
BsmI	GAATGC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	173, 373
Bsp143I	GATC	2 cut(s)	22, 273
BspHI	TCATGA	1 cut(s)	255
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	45, 309
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	2 cut(s)	22, 273
BssNAI	GTATAC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	437
Bst1107I	GTATAC	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	36, 368
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	211, 453, 482
BstF5I	GGATG	2 cut(s)	178, 373
BstKTI	GATC	2 cut(s)	25, 276
BstMAI	GTCTC	3 cut(s)	119, 196, 405
BstMBI	GATC	2 cut(s)	22, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	448, 457
BstSFI	CTRYAG	2 cut(s)	51, 289
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	218
BstZ17I	GTATAC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	178, 373
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	211, 453, 482
CciI	TCATGA	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	9 cut(s)	83, 161, 209, 241, 287, 294, 451, 455, 484
CviKI_1	RGCY	9 cut(s)	83, 161, 209, 241, 287, 294, 451, 455, 484
CviQI	GTAC	1 cut(s)	343
DpnI	GATC	2 cut(s)	24, 275
DpnII	GATC	2 cut(s)	22, 273
DraI	TTTAAA	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	1 cut(s)	259
FaiI	YATR	7 cut(s)	21, 108, 133, 135, 257, 311, 444
FatI	CATG	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	165, 360
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	89, 229, 424
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	99, 335
Hpy188III	TCNNGA	2 cut(s)	195, 256
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	36, 368
HpyCH4V	TGCA	3 cut(s)	302, 356, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	448, 457
Hsp92II	CATG	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	22, 273
LguI	GCTCTTC	1 cut(s)	73
LpnPI	CCDG	8 cut(s)	78, 140, 180, 218, 303, 342, 390, 437
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	119, 461
MalI	GATC	2 cut(s)	24, 275
MboI	GATC	2 cut(s)	22, 273
MboII	GAAGA	2 cut(s)	20, 90
MhlI	GDGCHC	2 cut(s)	173, 373
MluCI	AATT	3 cut(s)	12, 361, 429
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	254, 329, 463
MseI	TTAA	3 cut(s)	102, 267, 404
MspA1I	CMGCKG	1 cut(s)	451
Mva1269I	GAATGC	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	448, 457
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	22, 273
NlaIII	CATG	1 cut(s)	259
PagI	TCATGA	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	89, 229, 424
PkrI	GCNGC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	102, 267, 404
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	22, 273
SduI	GDGCHC	2 cut(s)	173, 373
SetI	ASST	6 cut(s)	85, 159, 211, 265, 453, 486
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	51, 289
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	3 cut(s)	12, 361, 429
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	2 cut(s)	36, 368
TaqI	TCGA	2 cut(s)	219, 427
TasI	AATT	3 cut(s)	12, 361, 429
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	89, 229, 424
Tru1I	TTAA	3 cut(s)	102, 267, 404
Tru9I	TTAA	3 cut(s)	102, 267, 404
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.