Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006387

Physical Location & Seq

Genomic Coordinates Forward (+)

21557253 .. 21560980

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G250200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGGTGCCTCTCTTCAACCTCGCCCCCAATCTTACAGTTTCAAAGCTGTGCTTTGGGACGATGACTTTCGGCGAGCAAAACACGTTTTCGGAGTCGTTTGGCCTCCTCGACCAAGCTTTCCAGGTCGGCGTCAATTTCTTTGACTCTGCAGAAATGTATCCAGTGGTTCAGCGAGCCCAGACTCAAGGGAGGAGCGAGGAGTACCTTGGCCGTTGGATTAGAGAGCGCAGAGTTCCTCGAAACAGCGTCGTTTTGGCCACCAAGGTTACGGGACCGTCTGGGCAGATGACTTGGATACGAGATGGCCCCAAGTGTTTGAATGCTAAGAATATCACCGAGGCCATTGACGGCAGCTTAAGGCGATTGCAGACAGATTACATTGATCTTTATCAGATTCATTGGCCTGATCGCTATGTTCCCATGTTCGGAGAAATTGAGTATGATCCAACCCGACAGTTTTGTTCGATTCCTATAGACGAACAACTTGATGCTCTTGGAAGAGCTGTTGATTCTGGTAAGATTAGATATGTTGGTCTCAGTAACGAAACACCGTATGGGGTGATGAAGTTTGTTCAGGTAGCTGAAAGGGGTACTCGCCATCCAAAGATTGTCTCTGTGCAGAACTCATACAGCTTGCTCTGTCGAACTTTTGATTCTGGGTTGGCTGAATGCTGTCATCATGAGAGGATCAGTTTATTAGCCTACAGCCCCCTTGCAATGGGTATACTCTCTGGGAAGTATTTTTTGCCTGATGGGGGTCCTGCAGATGCCCGGTTGAATCTTTTTAGAGGTAAATATTCGGAAGGGGAATCCAGATACAACCTGTCTGATCACATCATAAGAGCAGCGGCCATGGAATACATTGACATTGCAGGGAAGTACAGTGTTCACCCAGTATCTCTTGCAATAGCTTTTGTTTTGAGCCACCCCCTTGTTGCGAGTGTTGTGTTTGGAGCAACCAAGTCATGGCAACTGCAGGAGGTTCTAGATGGATGCAAGGTCGAGCTGACACCTGAAGTAATTACAGAAATCAACAAGATTCATGAAAGGTTTCCTAATCCATGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

358

Amino Acids

40.03

Weight (kDa)

6.26

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450
malus_domestica	MD03G1274000.v1.1 MD11G1296300.v1.1
prunus_persica	Prupe.1G022700_v2.0.a1 Prupe.3G229100_v2.0.a1 Prupe.3G229200_v2.0.a1 Prupe.7G125500_v2.0.a1 Prupe.8G162600_v2.0.a1 Prupe.8G250200_v2.0.a1
pyrus_communis	pycom03g21820
rosa_chinensis	RchiOBHm_Chr6g0292291
rosa_laevigata	RLG00000012045 RLG00000029263
rosa_multiflora	Rmu_sc0002993.1_g000019 Rmu_sc0041965.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175240
rosa_rugosa	Rorug06G0225200
rosa_samantha	Rh6AG338600 Rh6BG345700 Rh6CG352800 Rh6DG338600
rosa_wichuraiana	Rw6G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	969
AccI	GTMKAC	1 cut(s)	727
AciI	CCGC	2 cut(s)	5, 851
AclWI	GGATC	2 cut(s)	440, 698
AcoI	YGGCCR	3 cut(s)	211, 258, 852
AcuI	CTGAAG	1 cut(s)	1038
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	206, 595, 884
AfiI	CCNNNNNNNGG	4 cut(s)	428, 721, 758, 969
AflII	CTTAAG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	4 cut(s)	19, 45, 322, 781
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	8 cut(s)	49, 119, 357, 506, 584, 636, 914, 1009
AluI	AGCT	8 cut(s)	49, 119, 357, 506, 584, 636, 914, 1009
Alw26I	GTCTC	2 cut(s)	542, 619
AlwI	GGATC	2 cut(s)	440, 698
AoxI	GGCC	7 cut(s)	103, 211, 258, 307, 342, 404, 852
ApeKI	GCWGC	2 cut(s)	354, 848
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	275, 308, 761
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	3 cut(s)	328, 574, 884
AvaII	GGWCC	2 cut(s)	275, 761
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	366, 860
BccI	CCATC	4 cut(s)	299, 609, 749, 986
BceAI	ACGGC	2 cut(s)	198, 367
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	2 cut(s)	171, 291
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	775
BcoDI	GTCTC	2 cut(s)	542, 619
BfaI	CTAG	1 cut(s)	989
BfmI	CTRYAG	5 cut(s)	150, 474, 706, 765, 977
BfrI	CTTAAG	1 cut(s)	358
BfuI	GTATCC	2 cut(s)	171, 291
BisI	GCNGC	3 cut(s)	355, 849, 852
BlsI	GCNGC	3 cut(s)	356, 850, 853
Bme1390I	CCNGG	2 cut(s)	125, 775
Bme18I	GGWCC	2 cut(s)	275, 761
BmgT120I	GGNCC	3 cut(s)	275, 308, 761
BmiI	GGNNCC	4 cut(s)	9, 276, 310, 762
BmrFI	CCNGG	2 cut(s)	125, 775
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	3 cut(s)	481, 760, 986
BmuI	ACTGGG	1 cut(s)	890
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	775
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	4 cut(s)	208, 264, 339, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	428, 721, 758, 969
Bse1I	ACTGG	2 cut(s)	164, 896
Bse3DI	GCAATG	2 cut(s)	726, 870
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	4 cut(s)	208, 264, 339, 855
BseGI	GGATG	2 cut(s)	601, 1001
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	428, 721, 758, 969
BseMI	GCAATG	2 cut(s)	726, 870
BseMII	CTCAG	1 cut(s)	553
BseNI	ACTGG	2 cut(s)	164, 896
BseRI	GAGGAG	3 cut(s)	98, 208, 215
BseXI	GCAGC	2 cut(s)	366, 860
BsgI	GTGCAG	1 cut(s)	641
BshFI	GGCC	7 cut(s)	105, 213, 260, 309, 344, 406, 854
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	775
BslFI	GGGAC	3 cut(s)	73, 288, 1053
BslI	CCNNNNNNNGG	4 cut(s)	428, 721, 758, 969
BsmAI	GTCTC	2 cut(s)	542, 619
BsmFI	GGGAC	3 cut(s)	73, 288, 1053
BsmI	GAATGC	2 cut(s)	328, 677
BsnI	GGCC	7 cut(s)	105, 213, 260, 309, 344, 406, 854
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	385, 409, 445, 690, 832
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	2 cut(s)	5, 851
BspANI	GGCC	7 cut(s)	105, 213, 260, 309, 344, 406, 854
BspCNI	CTCAG	1 cut(s)	552
BspHI	TCATGA	2 cut(s)	682, 1045
BspLI	GGNNCC	4 cut(s)	9, 276, 310, 762
BspMAI	CTGCAG	3 cut(s)	154, 769, 981
BspPI	GGATC	2 cut(s)	440, 698
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	7
BspTI	CTTAAG	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	726, 870
BsrI	ACTGG	2 cut(s)	164, 896
BssECI	CCNNGG	4 cut(s)	208, 264, 339, 855
BssMI	GATC	5 cut(s)	385, 409, 445, 690, 832
BssNAI	GTATAC	1 cut(s)	728
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	208, 264, 855
Bst1107I	GTATAC	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	5 cut(s)	40, 279, 459, 555, 887
Bst6I	CTCTTC	2 cut(s)	20, 496
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	77, 177, 638
BstDEI	CTNAG	2 cut(s)	327, 539
BstDSI	CCRYGG	1 cut(s)	855
BstF5I	GGATG	2 cut(s)	601, 1001
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	388, 412, 448, 693, 835
BstMAI	GTCTC	2 cut(s)	542, 619
BstMBI	GATC	5 cut(s)	385, 409, 445, 690, 832
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	123, 773
BstSFI	CTRYAG	5 cut(s)	150, 474, 706, 765, 977
BstV1I	GCAGC	2 cut(s)	366, 860
BstZ17I	GTATAC	1 cut(s)	728
BsuI	GTATCC	2 cut(s)	171, 291
BsuRI	GGCC	7 cut(s)	105, 213, 260, 309, 344, 406, 854
BtgI	CCRYGG	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	601, 1001
BtsIMutI	CAGTG	2 cut(s)	171, 892
Cac8I	GCNNGC	3 cut(s)	77, 177, 638
CciI	TCATGA	2 cut(s)	682, 1045
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	275, 308, 761
CseI	GACGC	2 cut(s)	121, 238
Csp6I	GTAC	3 cut(s)	205, 594, 883
CviAII	CATG	6 cut(s)	424, 683, 856, 969, 1046, 1065
CviQI	GTAC	3 cut(s)	205, 594, 883
DdeI	CTNAG	2 cut(s)	327, 539
DpnI	GATC	5 cut(s)	387, 411, 447, 692, 834
DpnII	GATC	5 cut(s)	385, 409, 445, 690, 832
EaeI	YGGCCR	3 cut(s)	211, 258, 852
Eam1104I	CTCTTC	2 cut(s)	20, 496
EarI	CTCTTC	2 cut(s)	20, 496
Eco130I	CCWWGG	3 cut(s)	208, 264, 855
Eco24I	GRGCYC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	275, 761
Eco57I	CTGAAG	1 cut(s)	1038
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	208, 264, 855
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	3 cut(s)	208, 264, 855
FaeI	CATG	6 cut(s)	427, 686, 859, 972, 1049, 1068
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	3 cut(s)	73, 288, 1053
FatI	CATG	6 cut(s)	423, 682, 855, 968, 1045, 1064
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	727
Fnu4HI	GCNGC	3 cut(s)	355, 849, 852
FokI	GGATG	2 cut(s)	588, 1008
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	355, 849, 852
FspBI	CTAG	1 cut(s)	989
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	3 cut(s)	355, 849, 852
HaeIII	GGCC	7 cut(s)	105, 213, 260, 309, 344, 406, 854
HapII	CCGG	1 cut(s)	775
HgaI	GACGC	2 cut(s)	121, 238
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	427, 686, 859, 972, 1049, 1068
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	117
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	3 cut(s)	328, 574, 884
Hpy166II	GTNNAC	2 cut(s)	728, 892
Hpy188I	TCNGA	5 cut(s)	94, 396, 431, 805, 832
Hpy188III	TCNNGA	4 cut(s)	683, 816, 989, 1046
Hpy8I	GTNNAC	2 cut(s)	728, 892
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	5 cut(s)	40, 279, 459, 555, 887
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	9 cut(s)	152, 370, 622, 719, 767, 875, 908, 979, 999
HpyF3I	CTNAG	2 cut(s)	327, 539
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	427, 686, 859, 972, 1049, 1068
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	385, 409, 445, 690, 832
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	195, 956
Lsp1109I	GCAGC	2 cut(s)	366, 860
LweI	GCATC	3 cut(s)	481, 760, 986
MaeI	CTAG	1 cut(s)	989
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	268, 542
MalI	GATC	5 cut(s)	387, 411, 447, 692, 834
MboI	GATC	5 cut(s)	385, 409, 445, 690, 832
MboII	GAAGA	2 cut(s)	7, 513
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	3 cut(s)	136, 435, 1023
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	3 cut(s)	104, 140, 178
MmeI	TCCRAC	2 cut(s)	197, 473
Mox20I	TGGCCA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	1053
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	851
MspCI	CTTAAG	1 cut(s)	358
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	125, 775
Mva1269I	GAATGC	2 cut(s)	328, 677
MvaI	CCWGG	1 cut(s)	125
NciI	CCSGG	1 cut(s)	775
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	5 cut(s)	385, 409, 445, 690, 832
NlaIII	CATG	6 cut(s)	427, 686, 859, 972, 1049, 1068
NlaIV	GGNNCC	4 cut(s)	9, 276, 310, 762
PagI	TCATGA	2 cut(s)	682, 1045
PciSI	GCTCTTC	1 cut(s)	496
PctI	GAATGC	2 cut(s)	328, 677
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	7 cut(s)	397, 469, 512, 656, 781, 812, 1042
PflMI	CCANNNNNTGG	1 cut(s)	969
PkrI	GCNGC	3 cut(s)	356, 850, 853
PleI	GAGTC	3 cut(s)	103, 140, 178
PpsI	GAGTC	3 cut(s)	103, 140, 178
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	4 cut(s)	9, 276, 310, 762
PspPI	GGNCC	3 cut(s)	275, 308, 761
PspPPI	RGGWCCY	1 cut(s)	761
PstI	CTGCAG	3 cut(s)	154, 769, 981
RsaI	GTAC	3 cut(s)	206, 595, 884
RsaNI	GTAC	3 cut(s)	205, 594, 883
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	3 cut(s)	355, 849, 852
Sau3AI	GATC	5 cut(s)	385, 409, 445, 690, 832
Sau96I	GGNCC	3 cut(s)	275, 308, 761
SchI	GAGTC	3 cut(s)	104, 140, 178
ScrFI	CCNGG	2 cut(s)	125, 775
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	3 cut(s)	481, 760, 986
SfcI	CTRYAG	5 cut(s)	150, 474, 706, 765, 977
SinI	GGWCC	2 cut(s)	275, 761
SmlI	CTYRAG	2 cut(s)	186, 358
SmoI	CTYRAG	2 cut(s)	186, 358
Sse9I	AATT	3 cut(s)	136, 435, 1023
SsiI	CCGC	2 cut(s)	5, 851
SspI	AATATT	1 cut(s)	800
SspMI	CTAG	1 cut(s)	989
StyD4I	CCNGG	2 cut(s)	123, 773
StyI	CCWWGG	3 cut(s)	208, 264, 855
TaaI	ACNGT	5 cut(s)	40, 279, 459, 555, 887
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	5 cut(s)	111, 241, 467, 646, 1005
TasI	AATT	3 cut(s)	136, 435, 1023
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	7 cut(s)	397, 469, 512, 656, 781, 812, 1042
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	2 cut(s)	171, 892
TseI	GCWGC	2 cut(s)	354, 848
TspDTI	ATGAA	4 cut(s)	389, 581, 1034, 1062
TspRI	CASTG	2 cut(s)	171, 892
Van91I	CCANNNNNTGG	1 cut(s)	969
Vha464I	CTTAAG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	275, 761
XbaI	TCTAGA	1 cut(s)	988
XmiI	GTMKAC	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.