Rroxscaffold_7G00175240

Aldo-keto reductase-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006387
Physical Location & Seq
Reverse (-)
14835054 .. 14838535
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175240.1

Sequence Viewer

Length: 774 bp
ATGGCCCGAAGTGTTTGGATGCTGCGAATATCACTGAGGCCATTGACAGCAGTTTACGGCGATTGCAGACAGATTACATTGATCTTTATCAGATACACTGGCCTGATCGGTTTATATGTTCCGATGTTTGGAGAAACTGATTATGATCCAACCAGGCAATTTGGTTCGATTCCTATAGAGGAACAACTTGACGCTCTTGGGAGAGCTGTTCATTCTGGTAAGGTCAGATATGTTGGTCTCAGTAATGAAACAGCATATGGTGTGATGAAGTTTCTTCAGGTGGCTGAAAGAGGCACTCACCTTCCAAAGATTGTATCTGTGCAGAACTCATACAGCTTGCTATGTCGAACTTTTGATTCTGGATTGGCTGAATGCTGTCATCACGAGAGGGTCAGTTTATTAGCTTACAGCCCTCTTGCAATGGGTATACTCTCTGGGAAGTATTTTTCACCAGAAGGCGGTCCTTCAGATGCTCGGTTGAACCTTTTCAGAGGAAAGTATTCAGAAGGGGAGTCCAGATACAACTTGTCTAATCCCTCCATAAGGGCAGCAAGCATGGAATACATTCATATTGCAGAAAAGTACGGTCTTCATCCAGTATCTCTTGCAATTGCTTTTGTTTTGAGTCACCCTCTTGTAGCAAGTATCGTCTTTGGAGCAACCCAGTCATGGCAACTTCAGGAGGTTCTTGATGCATGCAAGGTGGAGCTCACATCCGAAGTAATGGTAGAAATCAACAAGGTTCACAAAAGATTTCCCAACCCTTGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

257

Amino Acids

28.64

Weight (kDa)

8.18

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 55 - 248 1.8e-32 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 427
AciI CCGC 1 cut(s) 459
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 3 cut(s) 260, 450, 662
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 4 cut(s) 128, 458, 543, 669
AgsI TTSAA 1 cut(s) 481
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 206, 336, 404, 709
AluI AGCT 4 cut(s) 206, 336, 404, 709
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 140
AoxI GGCC 3 cut(s) 3, 38, 100
ApeKI GCWGC 2 cut(s) 22, 548
Asp700I GAANNNNTTC 3 cut(s) 485, 499, 564
AspS9I GGNCC 2 cut(s) 4, 461
AsuHPI GGTGA 3 cut(s) 290, 441, 620
AvaII GGWCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 711
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 2 cut(s) 9, 560
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 2 cut(s) 23, 549
BlsI GCNGC 2 cut(s) 24, 550
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 4, 461
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 3 cut(s) 9, 460, 682
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 581
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BsaBI GATNNNNATC 2 cut(s) 86, 144
BsaI GGTCTC 1 cut(s) 242
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 458, 543, 669
Bse1I ACTGG 3 cut(s) 103, 596, 664
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 2 cut(s) 86, 144
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 3 cut(s) 24, 592, 713
BseJI GATNNNNATC 2 cut(s) 86, 144
BseLI CCNNNNNNNGG 4 cut(s) 128, 458, 543, 669
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 26, 253
BseNI ACTGG 3 cut(s) 103, 596, 664
BseXI GCAGC 2 cut(s) 9, 560
BsgI GTGCAG 1 cut(s) 341
BshFI GGCC 3 cut(s) 5, 40, 102
BsiHKAI GWGCWC 1 cut(s) 711
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 4 cut(s) 128, 458, 543, 669
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 753
BsmI GAATGC 1 cut(s) 377
BsnI GGCC 3 cut(s) 5, 40, 102
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 3 cut(s) 81, 105, 145
BspACI CCGC 1 cut(s) 459
BspANI GGCC 3 cut(s) 5, 40, 102
BspCNI CTCAG 2 cut(s) 27, 252
BspPI GGATC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 103, 596, 664
BssMI GATC 3 cut(s) 81, 105, 145
BssNAI GTATAC 1 cut(s) 428
BssSI CACGAG 1 cut(s) 383
Bst1107I GTATAC 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 587
BstC8I GCNNGC 3 cut(s) 338, 553, 697
BstDEI CTNAG 2 cut(s) 35, 239
BstENI CCTNNNNNAGG 1 cut(s) 541
BstF5I GGATG 3 cut(s) 24, 592, 713
BstKTI GATC 3 cut(s) 84, 108, 148
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 81, 105, 145
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 9, 560
BstV2I GAAGAC 1 cut(s) 581
BstZ17I GTATAC 1 cut(s) 428
BsuRI GGCC 3 cut(s) 5, 40, 102
BtsCI GGATG 3 cut(s) 24, 592, 713
BtsIMutI CAGTG 2 cut(s) 32, 96
Cac8I GCNNGC 3 cut(s) 338, 553, 697
Cfr13I GGNCC 2 cut(s) 4, 461
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 583
CviAII CATG 3 cut(s) 556, 669, 696
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 2 cut(s) 35, 239
DpnI GATC 3 cut(s) 83, 107, 147
DpnII GATC 3 cut(s) 81, 105, 145
Ecl136II GAGCTC 1 cut(s) 709
Eco24I GRGCYC 1 cut(s) 711
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 461
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 3 cut(s) 260, 450, 662
EcoICRI GAGCTC 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 711
FaeI CATG 3 cut(s) 559, 672, 699
FaqI GGGAC 1 cut(s) 753
FatI CATG 3 cut(s) 555, 668, 695
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 23, 549
FokI GGATG 3 cut(s) 31, 579, 700
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 2 cut(s) 23, 549
GluI GCNGC 2 cut(s) 23, 549
HaeIII GGCC 3 cut(s) 5, 40, 102
HgaI GACGC 1 cut(s) 200
Hin1II CATG 3 cut(s) 559, 672, 699
HinfI GANTC 4 cut(s) 169, 356, 512, 625
HphI GGTGA 3 cut(s) 290, 441, 620
Hpy166II GTNNAC 3 cut(s) 55, 428, 745
Hpy188I TCNGA 7 cut(s) 92, 123, 227, 469, 491, 505, 718
Hpy188III TCNNGA 5 cut(s) 360, 383, 516, 680, 689
Hpy8I GTNNAC 3 cut(s) 55, 428, 745
HpyAV CCTTC 4 cut(s) 311, 449, 474, 500
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4V TGCA 7 cut(s) 66, 322, 419, 575, 608, 695, 699
HpyF3I CTNAG 2 cut(s) 35, 239
Hsp92II CATG 3 cut(s) 559, 672, 699
Kzo9I GATC 3 cut(s) 81, 105, 145
LmnI GCTCC 2 cut(s) 656, 706
Lsp1109I GCAGC 2 cut(s) 9, 560
LweI GCATC 3 cut(s) 9, 460, 682
MaeIII GTNAC 1 cut(s) 626
MalI GATC 3 cut(s) 83, 107, 147
MboI GATC 3 cut(s) 81, 105, 145
MboII GAAGA 2 cut(s) 266, 581
MfeI CAATTG 1 cut(s) 609
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 2 cut(s) 158, 609
MlyI GAGTC 2 cut(s) 521, 634
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 9 cut(s) 30, 172, 284, 381, 423, 485, 547, 642, 676
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 3 cut(s) 485, 499, 564
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 377
MvaI CCWGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 256
NdeII GATC 3 cut(s) 81, 105, 145
NlaIII CATG 3 cut(s) 559, 672, 699
NmuCI GTSAC 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 1 cut(s) 699
PaeI GCATGC 1 cut(s) 699
PctI GAATGC 1 cut(s) 377
PdmI GAANNNNTTC 3 cut(s) 485, 499, 564
PfeI GAWTC 2 cut(s) 169, 356
PkrI GCNGC 2 cut(s) 24, 550
PleI GAGTC 2 cut(s) 520, 633
PpsI GAGTC 2 cut(s) 520, 633
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspPI GGNCC 2 cut(s) 4, 461
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SacI GAGCTC 1 cut(s) 711
SatI GCNGC 2 cut(s) 23, 549
Sau3AI GATC 3 cut(s) 81, 105, 145
Sau96I GGNCC 2 cut(s) 4, 461
SchI GAGTC 2 cut(s) 521, 634
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 3 cut(s) 9, 460, 682
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 461
SphI GCATGC 1 cut(s) 699
Sse9I AATT 2 cut(s) 158, 609
SsiI CCGC 1 cut(s) 459
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 587
TaqI TCGA 2 cut(s) 167, 346
TasI AATT 2 cut(s) 158, 609
TfiI GAWTC 2 cut(s) 169, 356
TscAI CASTG 2 cut(s) 39, 103
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 2 cut(s) 22, 548
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 5 cut(s) 200, 261, 281, 557, 581
TspRI CASTG 2 cut(s) 39, 103
VpaK11BI GGWCC 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 541
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 3 cut(s) 485, 499, 564
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.