RLG00000012045

Aldo-keto reductase-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006387
Physical Location & Seq
Reverse (-)
14743850 .. 14747385
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012045

Sequence Viewer

Length: 786 bp
ATGACTTGGATAAGAGATGGCCCGAAGTGTTTGGATGCTGCGAATATCACTGAGGCCATTGACAGCAGTTTACAGCGATTGCAGACGGATTACATTGATCTTTATCAGATACACTGGCCTGATCGATATGTTCCGATGTTTGGAGAAACTGAATATGATCCAACCAGGCAATTTGGTTCGATTCCTATAGAGGAACAACTTGACGCTCTTGGGAGAGCTGTTGATTCTGGTAAGGTCAGATATGTTGGTCTCAGTAATGAAACAGCATATGGTGTGATGAAGTTTCTTCAGGTGGCTGAAAGAGGCACTCACCTTCCAAAGATTGTATCTGTGCAGAACTCATACAGCTTGCTATGTCGAACTTTTGATTCTGGATTGGCTGAATGCTGTCATCATGAGAGGGTCAGTTTATTAGCTTACAGCCCTCTTGCAATGGGTATACTCTCTGGGAAGTATTTTTCACTGGAAGGCGGTCCTTCAGATGCTAGGTTGAACCTTTTCAGAGGAAAGTATTCAGAAGGGGATTCCAGATACAACTTGTCTAATCCCTCCATAAGAGCAGCAAGCATGGAATACATTCATATTGCAGAAAAGTACGGTCTTCATCCAGTATCTCTTGCAATTGCCTTTGTTTTGAGTCACCCTCTTGTAGCAAGTATCGTCTTTGGAGCAACCCAGTCATGGCAACTTCAGGAAGTTCTTGATGCATGCAAGGTGGAGCTCACATCTGAAGTAATGGTAGAAATCAACAAGGTTCACAAAAGATTTCCTAACCCTTGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

262

Amino Acids

29.2

Weight (kDa)

5.76

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 6 - 252 5.5e-48 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 439
AciI CCGC 1 cut(s) 471
AclWI GGATC 1 cut(s) 152
AcuI CTGAAG 4 cut(s) 272, 462, 674, 750
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 2 cut(s) 140, 681
AgsI TTSAA 1 cut(s) 493
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 4 cut(s) 218, 348, 416, 721
AluI AGCT 4 cut(s) 218, 348, 416, 721
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 152
AoxI GGCC 3 cut(s) 19, 54, 116
ApeKI GCWGC 2 cut(s) 38, 560
Asp700I GAANNNNTTC 3 cut(s) 497, 511, 576
AspS9I GGNCC 2 cut(s) 20, 473
AsuHPI GGTGA 2 cut(s) 302, 632
AvaII GGWCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 25, 572
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 39, 561
BlsI GCNGC 2 cut(s) 40, 562
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 20, 473
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 3 cut(s) 25, 472, 694
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 593
BplI GAGNNNNNCTC 2 cut(s) 628, 660
Bsa29I ATCGAT 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 681
Bse1I ACTGG 4 cut(s) 119, 468, 608, 676
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 124
BseGI GGATG 2 cut(s) 40, 604
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 140, 681
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 42, 265
BseNI ACTGG 4 cut(s) 119, 468, 608, 676
BseXI GCAGC 2 cut(s) 25, 572
BsgI GTGCAG 1 cut(s) 353
BshFI GGCC 3 cut(s) 21, 56, 118
BshVI ATCGAT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 723
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 2 cut(s) 140, 681
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 21, 56, 118
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 3 cut(s) 97, 121, 157
BspACI CCGC 1 cut(s) 471
BspANI GGCC 3 cut(s) 21, 56, 118
BspCNI CTCAG 2 cut(s) 43, 264
BspDI ATCGAT 1 cut(s) 124
BspHI TCATGA 1 cut(s) 394
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 4 cut(s) 119, 468, 608, 676
BssMI GATC 3 cut(s) 97, 121, 157
BssNAI GTATAC 1 cut(s) 440
Bst1107I GTATAC 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 350, 565, 709
BstDEI CTNAG 2 cut(s) 51, 251
BstF5I GGATG 2 cut(s) 40, 604
BstKTI GATC 3 cut(s) 100, 124, 160
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 97, 121, 157
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 25, 572
BstV2I GAAGAC 1 cut(s) 593
BstZ17I GTATAC 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 3 cut(s) 21, 56, 118
BsuTUI ATCGAT 1 cut(s) 124
BtsCI GGATG 2 cut(s) 40, 604
BtsIMutI CAGTG 3 cut(s) 48, 112, 461
Cac8I GCNNGC 3 cut(s) 350, 565, 709
CciI TCATGA 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 20, 473
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 595
CviAII CATG 4 cut(s) 395, 568, 681, 708
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 2 cut(s) 51, 251
DpnI GATC 3 cut(s) 99, 123, 159
DpnII GATC 3 cut(s) 97, 121, 157
Ecl136II GAGCTC 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 723
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 721
Eco57I CTGAAG 4 cut(s) 272, 462, 674, 750
EcoICRI GAGCTC 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 1 cut(s) 723
FaeI CATG 4 cut(s) 398, 571, 684, 711
FaqI GGGAC 1 cut(s) 765
FatI CATG 4 cut(s) 394, 567, 680, 707
FauNDI CATATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 2 cut(s) 39, 561
FokI GGATG 2 cut(s) 47, 591
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 2 cut(s) 39, 561
FspBI CTAG 1 cut(s) 486
GluI GCNGC 2 cut(s) 39, 561
HaeIII GGCC 3 cut(s) 21, 56, 118
HgaI GACGC 1 cut(s) 212
Hin1II CATG 4 cut(s) 398, 571, 684, 711
HinfI GANTC 5 cut(s) 181, 224, 368, 524, 637
HphI GGTGA 2 cut(s) 302, 632
Hpy166II GTNNAC 3 cut(s) 71, 440, 757
Hpy188I TCNGA 7 cut(s) 108, 135, 239, 481, 503, 517, 730
Hpy188III TCNNGA 5 cut(s) 372, 395, 528, 692, 701
Hpy8I GTNNAC 3 cut(s) 71, 440, 757
HpyAV CCTTC 4 cut(s) 323, 461, 486, 512
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 7 cut(s) 82, 334, 431, 587, 620, 707, 711
HpyF3I CTNAG 2 cut(s) 51, 251
Hsp92II CATG 4 cut(s) 398, 571, 684, 711
Kzo9I GATC 3 cut(s) 97, 121, 157
LmnI GCTCC 2 cut(s) 668, 718
Lsp1109I GCAGC 2 cut(s) 25, 572
LweI GCATC 3 cut(s) 25, 472, 694
MaeI CTAG 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 638
MalI GATC 3 cut(s) 99, 123, 159
MboI GATC 3 cut(s) 97, 121, 157
MboII GAAGA 2 cut(s) 278, 593
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 2 cut(s) 170, 621
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 8 cut(s) 46, 184, 296, 393, 435, 497, 559, 654
Mph1103I ATGCAT 1 cut(s) 709
MroXI GAANNNNTTC 3 cut(s) 497, 511, 576
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 268
NdeII GATC 3 cut(s) 97, 121, 157
NlaIII CATG 4 cut(s) 398, 571, 684, 711
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 1 cut(s) 711
PaeI GCATGC 1 cut(s) 711
PagI TCATGA 1 cut(s) 394
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 3 cut(s) 497, 511, 576
PfeI GAWTC 4 cut(s) 181, 224, 368, 524
PkrI GCNGC 2 cut(s) 40, 562
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 2 cut(s) 20, 473
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SacI GAGCTC 1 cut(s) 723
SatI GCNGC 2 cut(s) 39, 561
Sau3AI GATC 3 cut(s) 97, 121, 157
Sau96I GGNCC 2 cut(s) 20, 473
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 3 cut(s) 25, 472, 694
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 473
SphI GCATGC 1 cut(s) 711
Sse9I AATT 2 cut(s) 170, 621
SsiI CCGC 1 cut(s) 471
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 723
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 599
TaqI TCGA 3 cut(s) 124, 179, 358
TasI AATT 2 cut(s) 170, 621
TfiI GAWTC 4 cut(s) 181, 224, 368, 524
TscAI CASTG 3 cut(s) 55, 119, 468
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 2 cut(s) 38, 560
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 4 cut(s) 273, 293, 569, 593
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 55, 119, 468
VpaK11BI GGWCC 1 cut(s) 473
XceI RCATGY 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 3 cut(s) 497, 511, 576
XspI CTAG 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.