Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006387

Physical Location & Seq

Genomic Coordinates Forward (+)

35707639 .. 35709562

Gene Structure 1924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1274000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACTTTCGGCGAGCAGAACTCGTCGCCGGAGTCCCTTCAACTCCTCGGCGGAGCTGTCGAGGCCGGAATCAACTTCTTCGACTCGGCAGAAATGTACCCGGTGGTTCAGCTAGCGGAGACTCAGGGGAGGAGCGAGGAGTACCCCGGCCGCTGGATTAGGGAGAGCAAAACGATACATCATCGTTTTGGCCACCAAGGTACTATGTTCCCATGTTTGGGGAAACAGAATATGATCCAACGCGGCAGCTTTGTTCAATTCCTATGGAGGGACAACTGGATTCTCTTGGGAGAGCTGTTGATTCGGGTAAGATATGTTGGTCTCAGTAACGAAACACCATACGGTGTCATGAAGTTTGTTCAGGTAGCTGAAAGGAGCACTTGCCGTCCCAAGATTGTGTCTCTGCAGAATGCATACAGCTTGCTATGCCGAAATTTTGATTCTGGATTGGCTAAATGCTGTCATCATGAGAGGATCGGTTTACTAGCTTACAGCCCCCTTGCAATGGGCATGCTCTCAGGGAAATATTCTGAAGGGGAATCCAGATACAACCTGTCCAATCACATCATAAGAGCAGCAGCCATGCCTTTGTTTCGAGCCGCCTCCTCGTTGCAAGTGTTATTTTCGGAGCAACCAAGTCACGGCAGCTTCAGGAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

221

Amino Acids

24.89

Weight (kDa)

9.04

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	2 - 56	7.3e-08	Aldo/keto reductase family
Aldo_ket_red	PF00248	103 - 181	2e-12	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006387)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450 FvH4_2g24450
malus_domestica	MD03G1274000.v1.1 MD11G1296300.v1.1
prunus_persica	Prupe.1G022700_v2.0.a1 Prupe.3G229100_v2.0.a1 Prupe.3G229200_v2.0.a1 Prupe.7G125500_v2.0.a1 Prupe.8G162600_v2.0.a1 Prupe.8G250200_v2.0.a1
pyrus_communis	pycom03g21820
rosa_chinensis	RchiOBHm_Chr6g0292291
rosa_laevigata	RLG00000012045 RLG00000029263
rosa_multiflora	Rmu_sc0002993.1_g000019 Rmu_sc0041965.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175240
rosa_rugosa	Rorug06G0225200
rosa_samantha	Rh6AG338600 Rh6BG345700 Rh6CG352800 Rh6DG338600
rosa_wichuraiana	Rw6G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AciI	CCGC	5 cut(s)	51, 116, 151, 243, 600
AclWI	GGATC	2 cut(s)	229, 482
AcoI	YGGCCR	2 cut(s)	148, 190
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	552, 634
AfaI	GTAC	3 cut(s)	98, 143, 202
AfiI	CCNNNNNNNGG	6 cut(s)	153, 217, 218, 268, 505, 641
AgsI	TTSAA	2 cut(s)	41, 257
AluBI	AGCT	8 cut(s)	56, 112, 249, 295, 368, 420, 488, 648
AluI	AGCT	8 cut(s)	56, 112, 249, 295, 368, 420, 488, 648
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	3 cut(s)	113, 326, 405
AlwI	GGATC	2 cut(s)	229, 482
AoxI	GGCC	3 cut(s)	63, 148, 190
ApeKI	GCWGC	4 cut(s)	246, 575, 578, 645
ApoI	RAATTY	1 cut(s)	433
AsuC2I	CCSGG	2 cut(s)	101, 147
AsuNHI	GCTAGC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	4 cut(s)	258, 587, 590, 657
BceAI	ACGGC	2 cut(s)	369, 658
BcnI	CCSGG	2 cut(s)	101, 147
BcoDI	GTCTC	3 cut(s)	113, 326, 405
BfaI	CTAG	3 cut(s)	113, 485, 661
BfmI	CTRYAG	1 cut(s)	404
BisI	GCNGC	7 cut(s)	151, 244, 247, 576, 579, 600, 646
BlsI	GCNGC	7 cut(s)	152, 245, 248, 577, 580, 601, 647
Bme1390I	CCNGG	2 cut(s)	101, 147
BmrFI	CCNGG	2 cut(s)	101, 147
BmtI	GCTAGC	1 cut(s)	116
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	101, 147
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	46, 145, 196
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 217, 218, 268, 505, 641
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	46, 145, 196
BseLI	CCNNNNNNNGG	6 cut(s)	153, 217, 218, 268, 505, 641
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	3 cut(s)	137, 337, 531
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	4 cut(s)	35, 145, 152, 595
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	258, 587, 590, 657
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	65, 150, 192
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	29, 66, 101, 147
BslFI	GGGAC	3 cut(s)	19, 284, 372
BslI	CCNNNNNNNGG	6 cut(s)	153, 217, 218, 268, 505, 641
BsmAI	GTCTC	3 cut(s)	113, 326, 405
BsmFI	GGGAC	3 cut(s)	19, 284, 372
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	65, 150, 192
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	234, 474
BspACI	CCGC	5 cut(s)	51, 116, 151, 243, 600
BspANI	GGCC	3 cut(s)	65, 150, 192
BspCNI	CTCAG	3 cut(s)	136, 336, 530
BspFNI	CGCG	1 cut(s)	243
BspHI	TCATGA	2 cut(s)	348, 466
BspMAI	CTGCAG	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	229, 482
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	46, 145, 196
BssMI	GATC	2 cut(s)	234, 474
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	14, 114, 422, 512
BstDEI	CTNAG	3 cut(s)	123, 323, 517
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	237, 477
BstMAI	GTCTC	3 cut(s)	113, 326, 405
BstMBI	GATC	2 cut(s)	234, 474
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 426
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	99, 145
BstSFI	CTRYAG	1 cut(s)	404
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	258, 587, 590, 657
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	65, 150, 192
Cac8I	GCNNGC	4 cut(s)	14, 114, 422, 512
CciI	TCATGA	2 cut(s)	348, 466
Csp6I	GTAC	3 cut(s)	97, 142, 201
CviAII	CATG	5 cut(s)	213, 349, 467, 511, 583
CviQI	GTAC	3 cut(s)	97, 142, 201
DdeI	CTNAG	3 cut(s)	123, 323, 517
DpnI	GATC	2 cut(s)	236, 476
DpnII	GATC	2 cut(s)	234, 474
EaeI	YGGCCR	2 cut(s)	148, 190
EagI	CGGCCG	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	326
Eco52I	CGGCCG	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	552, 634
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	5 cut(s)	216, 352, 470, 514, 586
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FaqI	GGGAC	3 cut(s)	19, 284, 372
FatI	CATG	5 cut(s)	212, 348, 466, 510, 582
Fnu4HI	GCNGC	7 cut(s)	151, 244, 247, 576, 579, 600, 646
Fsp4HI	GCNGC	7 cut(s)	151, 244, 247, 576, 579, 600, 646
FspBI	CTAG	3 cut(s)	113, 485, 661
GluI	GCNGC	7 cut(s)	151, 244, 247, 576, 579, 600, 646
HaeIII	GGCC	3 cut(s)	65, 150, 192
HapII	CCGG	4 cut(s)	29, 66, 101, 147
Hin1II	CATG	5 cut(s)	216, 352, 470, 514, 586
HinfI	GANTC	8 cut(s)	32, 69, 83, 121, 280, 301, 440, 539
HpaII	CCGG	4 cut(s)	29, 66, 101, 147
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	532, 628
Hpy188III	TCNNGA	5 cut(s)	349, 444, 467, 543, 652
Hpy8I	GTNNAC	1 cut(s)	482
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	47, 527
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	4 cut(s)	406, 413, 503, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 426
HpyF3I	CTNAG	3 cut(s)	123, 323, 517
Hsp92II	CATG	5 cut(s)	216, 352, 470, 514, 586
Kzo9I	GATC	2 cut(s)	234, 474
LmnI	GCTCC	4 cut(s)	53, 132, 375, 628
Lsp1109I	GCAGC	4 cut(s)	258, 587, 590, 657
MaeI	CTAG	3 cut(s)	113, 485, 661
MaeIII	GTNAC	2 cut(s)	326, 638
MalI	GATC	2 cut(s)	236, 476
MboI	GATC	2 cut(s)	234, 474
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	2 cut(s)	257, 433
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	3 cut(s)	41, 77, 115
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	9 cut(s)	55, 56, 123, 130, 261, 465, 613, 616, 648
Mox20I	TGGCCA	1 cut(s)	192
Mph1103I	ATGCAT	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	4 cut(s)	29, 66, 101, 147
MspR9I	CCNGG	2 cut(s)	101, 147
Mva1269I	GAATGC	1 cut(s)	415
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	62, 426
NciI	CCSGG	2 cut(s)	101, 147
NdeII	GATC	2 cut(s)	234, 474
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	5 cut(s)	216, 352, 470, 514, 586
NmeAIII	GCCGAG	2 cut(s)	27, 65
NmuCI	GTSAC	1 cut(s)	638
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	514
PagI	TCATGA	2 cut(s)	348, 466
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	5 cut(s)	69, 280, 301, 440, 539
PkrI	GCNGC	7 cut(s)	152, 245, 248, 577, 580, 601, 647
PleI	GAGTC	3 cut(s)	40, 77, 115
PpsI	GAGTC	3 cut(s)	40, 77, 115
PstI	CTGCAG	1 cut(s)	408
RsaI	GTAC	3 cut(s)	98, 143, 202
RsaNI	GTAC	3 cut(s)	97, 142, 201
SatI	GCNGC	7 cut(s)	151, 244, 247, 576, 579, 600, 646
Sau3AI	GATC	2 cut(s)	234, 474
SchI	GAGTC	3 cut(s)	41, 77, 115
ScrFI	CCNGG	2 cut(s)	101, 147
SduI	GDGCHC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	2 cut(s)	257, 433
SsiI	CCGC	5 cut(s)	51, 116, 151, 243, 600
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	3 cut(s)	113, 485, 661
StyD4I	CCNGG	2 cut(s)	99, 145
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	3 cut(s)	60, 81, 595
TasI	AATT	2 cut(s)	257, 433
TauI	GCSGC	3 cut(s)	153, 246, 602
TfiI	GAWTC	5 cut(s)	69, 280, 301, 440, 539
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	4 cut(s)	246, 575, 578, 645
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	1 cut(s)	365
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	3 cut(s)	113, 485, 661
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.