Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Reverse (-)

20198628 .. 20199620

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATGGCGGAGGTGGAGATGGTGGAGGTGGAGGTGGAGGTGGGGGTGGGGGTGGGGGTGGATGGGGTGGAGACGGCGGTGGATGGGGTGGAGGTGGTGGTGGCGGTGGATGGGGTGGAGGGCACGGAGGGGGAGGGCCGGGTGGTTGGGGTGGAGGTCCTGGAGGGGGAGGGCCTGGTGGTTGGGGCGGAGGTCCTGGAGGGGGTGGGCCTGGTGGATGGGGCCATGGTCCTGGAGGACCTGGTTGGGGTCCAGGTCCTGGAGGTCTATGGGGTCCAGGCCCGGGAGGACCTTGGGGTCCTGGGCCTGGCGGACCTTGGGGTCCGGGATATGGCGGGGGGTGGTGGGGCGGACCTGGTGGCTTCTTTGGCGGGTTTGGCAATGGAATATGCCAGATGATATCTTCTTGTTTCTCGTGCTTGTGCTGCTGTTGTTTGCTAGATGAATGCTTTGGTGGACCTCGTGGCGGATATGGACCTCCTCCTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

14.19

Weight (kDa)

4.34

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	297, 321
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	9 cut(s)	9, 78, 105, 189, 312, 336, 351, 372, 468
AfiI	CCNNNNNNNGG	8 cut(s)	167, 203, 248, 260, 284, 308, 332, 467
Alw26I	GTCTC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	6 cut(s)	137, 173, 209, 223, 280, 305
ApeKI	GCWGC	1 cut(s)	426
AsuC2I	CCSGG	4 cut(s)	141, 284, 285, 327
AvaI	CYCGRG	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	415, 462
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	5 cut(s)	14, 57, 78, 105, 213
BceAI	ACGGC	1 cut(s)	91
BcnI	CCSGG	4 cut(s)	141, 284, 285, 327
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	1 cut(s)	427
BlsI	GCNGC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	283
BmiI	GGNNCC	5 cut(s)	224, 252, 276, 300, 324
BpmI	CTGGAG	4 cut(s)	183, 219, 255, 282
BpuMI	CCSGG	4 cut(s)	141, 284, 285, 327
BsaJI	CCNNGG	5 cut(s)	226, 283, 293, 302, 317
Bsc4I	CCNNNNNNNGG	8 cut(s)	167, 203, 248, 260, 284, 308, 332, 467
Bse3DI	GCAATG	1 cut(s)	388
BseDI	CCNNGG	5 cut(s)	226, 283, 293, 302, 317
BseGI	GGATG	5 cut(s)	10, 68, 89, 116, 224
BseLI	CCNNNNNNNGG	8 cut(s)	167, 203, 248, 260, 284, 308, 332, 467
BseMI	GCAATG	1 cut(s)	388
BseRI	GAGGAG	2 cut(s)	471, 474
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	413
BshFI	GGCC	6 cut(s)	139, 175, 211, 225, 282, 307
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	140, 284, 326
BslI	CCNNNNNNNGG	8 cut(s)	167, 203, 248, 260, 284, 308, 332, 467
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	6 cut(s)	139, 175, 211, 225, 282, 307
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	9 cut(s)	9, 78, 105, 189, 312, 336, 351, 372, 468
BspANI	GGCC	6 cut(s)	139, 175, 211, 225, 282, 307
BspLI	GGNNCC	5 cut(s)	224, 252, 276, 300, 324
BsrDI	GCAATG	1 cut(s)	388
BssECI	CCNNGG	5 cut(s)	226, 283, 293, 302, 317
BssSI	CACGAG	2 cut(s)	415, 462
BssT1I	CCWWGG	3 cut(s)	226, 293, 317
Bst2BI	CACGAG	2 cut(s)	415, 462
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	10, 68, 89, 116, 224
BstMAI	GTCTC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	369, 378, 426
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	413
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	6 cut(s)	139, 175, 211, 225, 282, 307
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	10, 68, 89, 116, 224
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr9I	CCCGGG	1 cut(s)	283
CsiI	ACCWGGT	2 cut(s)	241, 355
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	7 cut(s)	139, 175, 211, 225, 282, 307, 363
CviKI_1	RGCY	7 cut(s)	139, 175, 211, 225, 282, 307, 363
DrdI	GACNNNNNNGTC	2 cut(s)	297, 321
DseDI	GACNNNNNNGTC	2 cut(s)	297, 321
EciI	GGCGGA	5 cut(s)	24, 204, 327, 366, 483
Eco130I	CCWWGG	3 cut(s)	226, 293, 317
Eco32I	GATATC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	283
EcoO109I	RGGNCCY	7 cut(s)	158, 173, 194, 239, 257, 290, 299
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	3 cut(s)	226, 293, 317
ErhI	CCWWGG	3 cut(s)	226, 293, 317
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	1 cut(s)	230
FaiI	YATR	5 cut(s)	228, 271, 333, 391, 474
FatI	CATG	1 cut(s)	226
FauI	CCCGC	2 cut(s)	329, 365
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	5 cut(s)	17, 75, 96, 123, 231
Fsp4HI	GCNGC	1 cut(s)	427
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	1 cut(s)	427
GsuI	CTGGAG	4 cut(s)	183, 219, 255, 282
HaeIII	GGCC	6 cut(s)	139, 175, 211, 225, 282, 307
HapII	CCGG	3 cut(s)	140, 284, 326
Hin1II	CATG	1 cut(s)	230
HpaII	CCGG	3 cut(s)	140, 284, 326
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	1 cut(s)	494
Hpy8I	GTNNAC	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	369, 378, 426
Hsp92II	CATG	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	413
MabI	ACCWGGT	2 cut(s)	241, 355
MaeI	CTAG	1 cut(s)	440
MboII	GAAGA	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	126
MspI	CCGG	3 cut(s)	140, 284, 326
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	369, 378, 426
NciI	CCSGG	4 cut(s)	141, 284, 285, 327
NcoI	CCATGG	1 cut(s)	226
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	5 cut(s)	224, 252, 276, 300, 324
PctI	GAATGC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	260
PfoI	TCCNGGA	5 cut(s)	160, 196, 232, 259, 325
PkrI	GCNGC	1 cut(s)	428
PpuMI	RGGWCCY	6 cut(s)	158, 194, 239, 257, 290, 299
Psp5II	RGGWCCY	6 cut(s)	158, 194, 239, 257, 290, 299
PspN4I	GGNNCC	5 cut(s)	224, 252, 276, 300, 324
PspPPI	RGGWCCY	6 cut(s)	158, 194, 239, 257, 290, 299
PstNI	CAGNNNCTG	1 cut(s)	260
SatI	GCNGC	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	126
SexAI	ACCWGGT	2 cut(s)	241, 355
SmaI	CCCGGG	1 cut(s)	285
SsiI	CCGC	9 cut(s)	9, 78, 105, 189, 312, 336, 351, 372, 468
SspMI	CTAG	1 cut(s)	440
StyI	CCWWGG	3 cut(s)	226, 293, 317
TseI	GCWGC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	141
TspMI	CCCGGG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	260
XmaI	CCCGGG	1 cut(s)	283
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.