Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Reverse (-)

20200592 .. 20201119

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCATGGCGGAGGTGGTCCGGGCGGAGGTGGAGGTCCAGGAGGAGGAGGGCCTGGTGGATGGGGTGGAGGTCCTGGAGGGGGTGGCCCTGGTGGATGGGGAGGAGGACCCGGAGGGCCAGGAGGACCAGGAGGGCCAGGAGGACCAGGAGGACCATGGGGTCCTGGCCCGGGAGGCCCGGGAGGACCTTGGGGTCCGGGGCCTGGCGGACCTCCTTGGGGTCCGGGATTTGGCGGACCTTGGTGGGGAGGACCTGGTGGCTTCTTTGGTGGGTTTGGCAATGGCCTATGTGACATGATATCTTCTTGCTTCTACTGCTTGTGCTGCTGCTGTTTGCTAGATGAATGCTTTGGTGGACCTCGTGGTGGATTTGGACCTCCTGGAGGACCCGGAGGACCTCCTCCCCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

12.05

Weight (kDa)

4.53

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	159, 192
AciI	CCGC	4 cut(s)	9, 24, 207, 234
Ama87I	CYCGRG	2 cut(s)	169, 178
AoxI	GGCC	8 cut(s)	50, 85, 116, 134, 166, 175, 200, 283
ApeKI	GCWGC	2 cut(s)	324, 327
AsuC2I	CCSGG	9 cut(s)	21, 111, 170, 171, 179, 180, 198, 225, 390
AvaI	CYCGRG	2 cut(s)	169, 178
BauI	CACGAG	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	311, 314
BccI	CCATC	2 cut(s)	54, 90
BcnI	CCSGG	9 cut(s)	21, 111, 170, 171, 179, 180, 198, 225, 390
BfaI	CTAG	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	325, 328
BlsI	GCNGC	2 cut(s)	326, 329
BmeT110I	CYCGRG	2 cut(s)	169, 178
BmiI	GGNNCC	6 cut(s)	109, 162, 195, 201, 222, 388
BpmI	CTGGAG	2 cut(s)	96, 402
BpuMI	CCSGG	9 cut(s)	21, 111, 170, 171, 179, 180, 198, 225, 390
BsaJI	CCNNGG	8 cut(s)	88, 155, 169, 178, 188, 197, 215, 239
Bse3DI	GCAATG	1 cut(s)	286
BseDI	CCNNGG	8 cut(s)	88, 155, 169, 178, 188, 197, 215, 239
BseGI	GGATG	2 cut(s)	65, 101
BseMI	GCAATG	1 cut(s)	286
BseRI	GAGGAG	4 cut(s)	57, 60, 117, 390
BseXI	GCAGC	2 cut(s)	311, 314
BshFI	GGCC	8 cut(s)	52, 87, 118, 136, 168, 177, 202, 285
BsiHKCI	CYCGRG	2 cut(s)	169, 178
BsiSI	CCGG	7 cut(s)	20, 111, 170, 179, 197, 224, 390
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	8 cut(s)	52, 87, 118, 136, 168, 177, 202, 285
BsoBI	CYCGRG	2 cut(s)	169, 178
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	4 cut(s)	9, 24, 207, 234
BspANI	GGCC	8 cut(s)	52, 87, 118, 136, 168, 177, 202, 285
BspLI	GGNNCC	6 cut(s)	109, 162, 195, 201, 222, 388
BsrDI	GCAATG	1 cut(s)	286
BssECI	CCNNGG	8 cut(s)	88, 155, 169, 178, 188, 197, 215, 239
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	4 cut(s)	155, 188, 215, 239
Bst2BI	CACGAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	65, 101
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 315, 324
BstV1I	GCAGC	2 cut(s)	311, 314
BsuRI	GGCC	8 cut(s)	52, 87, 118, 136, 168, 177, 202, 285
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	65, 101
Cfr9I	CCCGGG	2 cut(s)	169, 178
CsiI	ACCWGGT	1 cut(s)	253
CviAII	CATG	3 cut(s)	5, 156, 295
CviJI	RGCY	9 cut(s)	52, 87, 118, 136, 168, 177, 202, 261, 285
CviKI_1	RGCY	9 cut(s)	52, 87, 118, 136, 168, 177, 202, 261, 285
DrdI	GACNNNNNNGTC	2 cut(s)	159, 192
DseDI	GACNNNNNNGTC	2 cut(s)	159, 192
EciI	GGCGGA	4 cut(s)	24, 39, 222, 249
Eco130I	CCWWGG	4 cut(s)	155, 188, 215, 239
Eco32I	GATATC	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	169, 178
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	9 cut(s)	50, 71, 107, 161, 185, 200, 251, 386, 395
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	4 cut(s)	155, 188, 215, 239
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	155, 188, 215, 239
FaeI	CATG	3 cut(s)	8, 159, 298
FaiI	YATR	4 cut(s)	6, 157, 289, 296
FatI	CATG	3 cut(s)	4, 155, 294
Fnu4HI	GCNGC	2 cut(s)	325, 328
FokI	GGATG	2 cut(s)	72, 108
Fsp4HI	GCNGC	2 cut(s)	325, 328
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	325, 328
GsuI	CTGGAG	2 cut(s)	96, 402
HaeIII	GGCC	8 cut(s)	52, 87, 118, 136, 168, 177, 202, 285
HapII	CCGG	7 cut(s)	20, 111, 170, 179, 197, 224, 390
Hin1II	CATG	3 cut(s)	8, 159, 298
HpaII	CCGG	7 cut(s)	20, 111, 170, 179, 197, 224, 390
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 315, 324
Hsp92II	CATG	3 cut(s)	8, 159, 298
Lsp1109I	GCAGC	2 cut(s)	311, 314
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	7 cut(s)	20, 111, 170, 179, 197, 224, 390
Mva1269I	GAATGC	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	174, 315, 324
NciI	CCSGG	9 cut(s)	21, 111, 170, 171, 179, 180, 198, 225, 390
NcoI	CCATGG	1 cut(s)	155
NlaIII	CATG	3 cut(s)	8, 159, 298
NlaIV	GGNNCC	6 cut(s)	109, 162, 195, 201, 222, 388
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	350
PfoI	TCCNGGA	4 cut(s)	37, 73, 223, 379
PkrI	GCNGC	2 cut(s)	326, 329
PpuMI	RGGWCCY	7 cut(s)	71, 107, 161, 185, 251, 386, 395
Psp5II	RGGWCCY	7 cut(s)	71, 107, 161, 185, 251, 386, 395
PspN4I	GGNNCC	6 cut(s)	109, 162, 195, 201, 222, 388
PspPPI	RGGWCCY	7 cut(s)	71, 107, 161, 185, 251, 386, 395
SatI	GCNGC	2 cut(s)	325, 328
SexAI	ACCWGGT	1 cut(s)	253
SfiI	GGCCNNNNNGGCC	1 cut(s)	174
SmaI	CCCGGG	2 cut(s)	171, 180
SsiI	CCGC	4 cut(s)	9, 24, 207, 234
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	4 cut(s)	155, 188, 215, 239
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	324, 327
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	357
TspMI	CCCGGG	2 cut(s)	169, 178
XagI	CCTNNNNNAGG	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmaI	CCCGGG	2 cut(s)	169, 178
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.