Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Reverse (-)

41538137 .. 41539324

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1298900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGGCCTGGAGGACCTGGTGGAGGAGGAGGACCGGGTGGTGGAGGTGGCTGGGGAGGCCCAGGTGGTGGCGGTCCGGGAGGAGGTGGATGGGGAGGCCCCGGGCCTGGAGGACCTGGCGGATGGGGCGGTCCTGGGCCTGGAGGACCTGGTGGCTGGGGCCCTGGCCCGGGGGGCCCTTGGGGTCCTGGTTTCATGGGAGGACCTGGCTTTTTTGGAGGGTTTGCTGATGGGTTATGCAGCATGATATCTTCTTGCTTCTACTGCCTGTGCTGCTGTTGTTTGCTGCAGGAATGCTTCGGCGGCGGTCCTCGTGGTGGATTTGGTCCTCCCGGAGGACCCCCTCCTCCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

10.42

Weight (kDa)

4.37

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	5 cut(s)	72, 120, 129, 303, 306
Ama87I	CYCGRG	2 cut(s)	101, 169
AoxI	GGCC	8 cut(s)	5, 58, 97, 104, 137, 160, 166, 175
ApaI	GGGCCC	2 cut(s)	164, 179
ApeKI	GCWGC	3 cut(s)	240, 273, 286
AsuC2I	CCSGG	7 cut(s)	36, 78, 102, 103, 170, 171, 333
AvaI	CYCGRG	2 cut(s)	101, 169
BaeGI	GKGCMC	2 cut(s)	164, 179
BanII	GRGCYC	2 cut(s)	164, 179
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	252, 260, 273
BccI	CCATC	3 cut(s)	84, 117, 224
BcnI	CCSGG	7 cut(s)	36, 78, 102, 103, 170, 171, 333
BfmI	CTRYAG	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	241, 274, 287, 304
BlsI	GCNGC	4 cut(s)	242, 275, 288, 305
BmeT110I	CYCGRG	2 cut(s)	101, 169
BmiI	GGNNCC	8 cut(s)	6, 100, 161, 162, 176, 177, 186, 340
BpmI	CTGGAG	3 cut(s)	30, 129, 162
BpuMI	CCSGG	7 cut(s)	36, 78, 102, 103, 170, 171, 333
BsaJI	CCNNGG	8 cut(s)	61, 100, 101, 134, 163, 169, 170, 179
BseDI	CCNNGG	8 cut(s)	61, 100, 101, 134, 163, 169, 170, 179
BseGI	GGATG	2 cut(s)	95, 128
BseRI	GAGGAG	4 cut(s)	39, 42, 96, 336
BseSI	GKGCMC	2 cut(s)	164, 179
BseXI	GCAGC	3 cut(s)	252, 260, 273
BseYI	CCCAGC	2 cut(s)	51, 156
BshFI	GGCC	8 cut(s)	7, 60, 99, 106, 139, 162, 168, 177
BsiHKCI	CYCGRG	2 cut(s)	101, 169
BsiSI	CCGG	5 cut(s)	35, 77, 102, 170, 333
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	8 cut(s)	7, 60, 99, 106, 139, 162, 168, 177
BsoBI	CYCGRG	2 cut(s)	101, 169
Bsp120I	GGGCCC	2 cut(s)	160, 175
Bsp1286I	GDGCHC	2 cut(s)	164, 179
BspACI	CCGC	5 cut(s)	72, 120, 129, 303, 306
BspANI	GGCC	8 cut(s)	7, 60, 99, 106, 139, 162, 168, 177
BspLI	GGNNCC	8 cut(s)	6, 100, 161, 162, 176, 177, 186, 340
BspMAI	CTGCAG	1 cut(s)	291
BssECI	CCNNGG	8 cut(s)	61, 100, 101, 134, 163, 169, 170, 179
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	312
BstENI	CCTNNNNNAGG	2 cut(s)	21, 333
BstF5I	GGATG	2 cut(s)	95, 128
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 126, 174, 264, 273, 303
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	2 cut(s)	164, 179
BstV1I	GCAGC	3 cut(s)	252, 260, 273
BsuRI	GGCC	8 cut(s)	7, 60, 99, 106, 139, 162, 168, 177
BtsCI	GGATG	2 cut(s)	95, 128
Cfr9I	CCCGGG	2 cut(s)	101, 169
CpoI	CGGWCCG	1 cut(s)	74
CsiI	ACCWGGT	2 cut(s)	16, 148
CspI	CGGWCCG	1 cut(s)	74
CviAII	CATG	2 cut(s)	196, 244
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	2 cut(s)	164, 179
Eco32I	GATATC	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	101, 169
EcoNI	CCTNNNNNAGG	2 cut(s)	21, 333
EcoRV	GATATC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	2 cut(s)	164, 179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	199, 247
FaiI	YATR	3 cut(s)	197, 238, 245
FatI	CATG	2 cut(s)	195, 243
Fnu4HI	GCNGC	4 cut(s)	241, 274, 287, 304
FokI	GGATG	2 cut(s)	102, 135
FriOI	GRGCYC	2 cut(s)	164, 179
Fsp4HI	GCNGC	4 cut(s)	241, 274, 287, 304
GluI	GCNGC	4 cut(s)	241, 274, 287, 304
GsaI	CCCAGC	2 cut(s)	55, 160
GsuI	CTGGAG	3 cut(s)	30, 129, 162
HaeIII	GGCC	8 cut(s)	7, 60, 99, 106, 139, 162, 168, 177
HapII	CCGG	5 cut(s)	35, 77, 102, 170, 333
Hin1II	CATG	2 cut(s)	199, 247
HpaII	CCGG	5 cut(s)	35, 77, 102, 170, 333
Hpy188I	TCNGA	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	240, 289
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 126, 174, 264, 273, 303
Hsp92II	CATG	2 cut(s)	199, 247
Lsp1109I	GCAGC	3 cut(s)	252, 260, 273
MabI	ACCWGGT	2 cut(s)	16, 148
MboII	GAAGA	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	164, 179
MspI	CCGG	5 cut(s)	35, 77, 102, 170, 333
Mva1269I	GAATGC	1 cut(s)	299
MwoI	GCNNNNNNNGC	6 cut(s)	57, 126, 174, 264, 273, 303
NciI	CCSGG	7 cut(s)	36, 78, 102, 103, 170, 171, 333
NlaIII	CATG	2 cut(s)	199, 247
NlaIV	GGNNCC	8 cut(s)	6, 100, 161, 162, 176, 177, 186, 340
PctI	GAATGC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	68
PfoI	TCCNGGA	2 cut(s)	76, 331
PkrI	GCNGC	4 cut(s)	242, 275, 288, 305
PpuMI	RGGWCCY	6 cut(s)	14, 113, 146, 185, 203, 338
Psp5II	RGGWCCY	6 cut(s)	14, 113, 146, 185, 203, 338
PspFI	CCCAGC	2 cut(s)	51, 156
PspN4I	GGNNCC	8 cut(s)	6, 100, 161, 162, 176, 177, 186, 340
PspOMI	GGGCCC	2 cut(s)	160, 175
PspPPI	RGGWCCY	6 cut(s)	14, 113, 146, 185, 203, 338
PstI	CTGCAG	1 cut(s)	291
Rsr2I	CGGWCCG	1 cut(s)	74
RsrII	CGGWCCG	1 cut(s)	74
SatI	GCNGC	4 cut(s)	241, 274, 287, 304
SduI	GDGCHC	2 cut(s)	164, 179
SetI	ASST	7 cut(s)	19, 49, 67, 88, 118, 151, 208
SexAI	ACCWGGT	2 cut(s)	16, 148
SfcI	CTRYAG	1 cut(s)	287
SfiI	GGCCNNNNNGGCC	1 cut(s)	174
SmaI	CCCGGG	2 cut(s)	103, 171
SsiI	CCGC	5 cut(s)	72, 120, 129, 303, 306
StyI	CCWWGG	1 cut(s)	179
TauI	GCSGC	1 cut(s)	306
TseI	GCWGC	3 cut(s)	240, 273, 286
TspDTI	ATGAA	1 cut(s)	184
TspMI	CCCGGG	2 cut(s)	101, 169
Van91I	CCANNNNNTGG	1 cut(s)	68
XagI	CCTNNNNNAGG	2 cut(s)	21, 333
XmaI	CCCGGG	2 cut(s)	101, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.