Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Reverse (-)

29890899 .. 29891877

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1216200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGACCTGGTGGAGGTCCCGGAGGACCTCCTGGACCGCCTCCCGGACCGCCTGGTTTCGGAGGACCTCCCGGACCGCCTGGTTTCGGAGGACCTCCCGGACCGCCTGGTCCGCATCCTCTCTTCGGTGGCTTTTGTGATTTCATTGGTGCATGTGTGAGTTTTCTGTGTTGCTGCTGGTTATTGCAAGACTGCTTTGGTGGGCCACCACTAGGGCCTCCAGCACCCTTTGGGCCACCTGCACCAGGGCCTCCCGCACCCTTTGGCCCACCTGCACCAGGGCCTCCTGCTCCCTTTGGCCCACCTGGCCCCCCCGGTCCAGCTGGCCCGCCTGGACCACCACCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

10.77

Weight (kDa)

5.19

Isoelectric Point (pI)

85.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	247, 280
AasI	GACNNNNNNGTC	1 cut(s)	108
Acc36I	ACCTGC	2 cut(s)	247, 280
AciI	CCGC	7 cut(s)	38, 50, 77, 104, 113, 255, 329
AfiI	CCNNNNNNNGG	8 cut(s)	14, 44, 59, 86, 125, 212, 245, 278
AjnI	CCWGG	9 cut(s)	7, 31, 52, 79, 106, 244, 277, 304, 331
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
AoxI	GGCC	9 cut(s)	203, 215, 233, 248, 265, 281, 298, 307, 325
ApeKI	GCWGC	1 cut(s)	174
AsuC2I	CCSGG	5 cut(s)	21, 45, 72, 99, 315
BbvI	GCAGC	1 cut(s)	161
BciT130I	CCWGG	9 cut(s)	9, 33, 54, 81, 108, 246, 279, 306, 333
BcnI	CCSGG	5 cut(s)	21, 45, 72, 99, 315
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	2 cut(s)	247, 280
BglI	GCCNNNNNGGC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	19, 310
BmsI	GCATC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	204
BpuMI	CCSGG	5 cut(s)	21, 45, 72, 99, 315
BsaJI	CCNNGG	3 cut(s)	245, 278, 313
Bsc4I	CCNNNNNNNGG	8 cut(s)	14, 44, 59, 86, 125, 212, 245, 278
BseBI	CCWGG	9 cut(s)	9, 33, 54, 81, 108, 246, 279, 306, 333
BseDI	CCNNGG	3 cut(s)	245, 278, 313
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	8 cut(s)	14, 44, 59, 86, 125, 212, 245, 278
BseXI	GCAGC	1 cut(s)	161
BsgI	GTGCAG	2 cut(s)	225, 258
BshFI	GGCC	9 cut(s)	205, 217, 235, 250, 267, 283, 300, 309, 327
BsiSI	CCGG	5 cut(s)	21, 45, 72, 99, 315
BslFI	GGGAC	1 cut(s)	3
BslI	CCNNNNNNNGG	8 cut(s)	14, 44, 59, 86, 125, 212, 245, 278
BsmFI	GGGAC	1 cut(s)	3
BsnI	GGCC	9 cut(s)	205, 217, 235, 250, 267, 283, 300, 309, 327
BspACI	CCGC	7 cut(s)	38, 50, 77, 104, 113, 255, 329
BspANI	GGCC	9 cut(s)	205, 217, 235, 250, 267, 283, 300, 309, 327
BspLI	GGNNCC	2 cut(s)	19, 310
BspMI	ACCTGC	2 cut(s)	247, 280
BssECI	CCNNGG	3 cut(s)	245, 278, 313
Bst2UI	CCWGG	9 cut(s)	9, 33, 54, 81, 108, 246, 279, 306, 333
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	325, 329
BstENI	CCTNNNNNAGG	3 cut(s)	12, 243, 276
BstF5I	GGATG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 306
BstNI	CCWGG	9 cut(s)	9, 33, 54, 81, 108, 246, 279, 306, 333
BstNSI	RCATGY	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	161
BsuRI	GGCC	9 cut(s)	205, 217, 235, 250, 267, 283, 300, 309, 327
BtsCI	GGATG	1 cut(s)	115
BveI	ACCTGC	2 cut(s)	247, 280
Cac8I	GCNNGC	2 cut(s)	325, 329
CpoI	CGGWCCG	3 cut(s)	47, 74, 101
CsiI	ACCWGGT	1 cut(s)	7
CspI	CGGWCCG	3 cut(s)	47, 74, 101
CviAII	CATG	2 cut(s)	153, 348
DrdI	GACNNNNNNGTC	1 cut(s)	108
DseDI	GACNNNNNNGTC	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	3 cut(s)	12, 243, 276
EcoO109I	RGGNCCY	7 cut(s)	17, 26, 65, 92, 215, 248, 281
EcoRII	CCWGG	9 cut(s)	7, 31, 52, 79, 106, 244, 277, 304, 331
FaeI	CATG	2 cut(s)	156, 351
FaiI	YATR	2 cut(s)	154, 349
FaqI	GGGAC	1 cut(s)	3
FatI	CATG	2 cut(s)	152, 347
FauI	CCCGC	2 cut(s)	262, 336
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	9 cut(s)	205, 217, 235, 250, 267, 283, 300, 309, 327
HapII	CCGG	5 cut(s)	21, 45, 72, 99, 315
Hin1II	CATG	2 cut(s)	156, 351
HpaII	CCGG	5 cut(s)	21, 45, 72, 99, 315
Hpy188I	TCNGA	2 cut(s)	62, 89
HpyCH4V	TGCA	4 cut(s)	152, 187, 242, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 306
Hsp92II	CATG	2 cut(s)	156, 351
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	124
MabI	ACCWGGT	1 cut(s)	7
MaeI	CTAG	1 cut(s)	212
MboII	GAAGA	1 cut(s)	115
MslI	CAYNNNNRTG	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	5 cut(s)	21, 45, 72, 99, 315
MvaI	CCWGG	9 cut(s)	9, 33, 54, 81, 108, 246, 279, 306, 333
MwoI	GCNNNNNNNGC	2 cut(s)	112, 306
NciI	CCSGG	5 cut(s)	21, 45, 72, 99, 315
NlaIII	CATG	2 cut(s)	156, 351
NlaIV	GGNNCC	2 cut(s)	19, 310
NspI	RCATGY	1 cut(s)	156
PaqCI	CACCTGC	2 cut(s)	247, 280
PfoI	TCCNGGA	5 cut(s)	19, 31, 43, 70, 97
PkrI	GCNGC	1 cut(s)	176
PpuMI	RGGWCCY	4 cut(s)	17, 26, 65, 92
Psp5II	RGGWCCY	4 cut(s)	17, 26, 65, 92
Psp6I	CCWGG	9 cut(s)	7, 31, 52, 79, 106, 244, 277, 304, 331
PspGI	CCWGG	9 cut(s)	7, 31, 52, 79, 106, 244, 277, 304, 331
PspN4I	GGNNCC	2 cut(s)	19, 310
PspPPI	RGGWCCY	4 cut(s)	17, 26, 65, 92
PvuII	CAGCTG	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	346
Rsr2I	CGGWCCG	3 cut(s)	47, 74, 101
RsrII	CGGWCCG	3 cut(s)	47, 74, 101
SatI	GCNGC	1 cut(s)	175
SexAI	ACCWGGT	1 cut(s)	7
SfaNI	GCATC	1 cut(s)	124
SfiI	GGCCNNNNNGGCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	346
SsiI	CCGC	7 cut(s)	38, 50, 77, 104, 113, 255, 329
SspMI	CTAG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	133
XagI	CCTNNNNNAGG	3 cut(s)	12, 243, 276
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.