Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Reverse (-)

55455131 .. 55458241

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATGGCGGAGGTGGAGGAGGCGGTGGCGGTCCAGGAGGAGGAGGGCCTGGTGGATGGGGTGGAGGGGGAGGACCGGGTGGTTGGGGCGGAGGTCCTGGAGGGGGTGGACCTGGTGGATGGGGCCATGGGCCCGGAGGACAGGGAGGGCCGGGAGGCTGGGGTCCAGGTCCTGGAGGACTGTGGGGTCCTAGCCCGGGAGGACCTTGGGGTCCTGGGCCTGGCGGACCTTGGGGTCCGGGATTTGGTGGGGGATGGTGGGGCGGACCTGGTGGCTTCTTTGGTGGGTTTGGCAATGGCATATGTGAGATGATATCTTCTTGCTTCTACTGCTTGTGCTGCTGTTGTTTGCTAGATGAATGCTTCGGTGGACCTCGTGGCGGATATGGACCTCCTCCTCGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

12.18

Weight (kDa)

4.75

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	186, 210, 234
AccB7I	CCANNNNNTGG	1 cut(s)	173
AciI	CCGC	7 cut(s)	9, 24, 30, 90, 225, 264, 381
AfiI	CCNNNNNNNGG	7 cut(s)	41, 104, 173, 197, 221, 245, 380
AjnI	CCWGG	9 cut(s)	34, 49, 97, 112, 166, 172, 214, 220, 268
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	5 cut(s)	47, 124, 131, 149, 218
ApaI	GGGCCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	339
AsuC2I	CCSGG	6 cut(s)	78, 135, 153, 197, 198, 240
AvaI	CYCGRG	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	3 cut(s)	51, 114, 249
BciT130I	CCWGG	9 cut(s)	36, 51, 99, 114, 168, 174, 216, 222, 270
BcnI	CCSGG	6 cut(s)	78, 135, 153, 197, 198, 240
BfaI	CTAG	2 cut(s)	192, 353
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	6 cut(s)	125, 133, 165, 189, 213, 237
BpmI	CTGGAG	2 cut(s)	120, 195
BpuMI	CCSGG	6 cut(s)	78, 135, 153, 197, 198, 240
BsaJI	CCNNGG	5 cut(s)	127, 196, 206, 215, 230
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 104, 173, 197, 221, 245, 380
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	9 cut(s)	36, 51, 99, 114, 168, 174, 216, 222, 270
BseDI	CCNNGG	5 cut(s)	127, 196, 206, 215, 230
BseGI	GGATG	4 cut(s)	10, 62, 125, 260
BseLI	CCNNNNNNNGG	7 cut(s)	41, 104, 173, 197, 221, 245, 380
BseMI	GCAATG	1 cut(s)	301
BseRI	GAGGAG	5 cut(s)	33, 54, 57, 384, 387
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	5 cut(s)	49, 126, 133, 151, 220
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	5 cut(s)	77, 135, 152, 197, 239
BslI	CCNNNNNNNGG	7 cut(s)	41, 104, 173, 197, 221, 245, 380
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	5 cut(s)	49, 126, 133, 151, 220
BsoBI	CYCGRG	1 cut(s)	196
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	7 cut(s)	9, 24, 30, 90, 225, 264, 381
BspANI	GGCC	5 cut(s)	49, 126, 133, 151, 220
BspLI	GGNNCC	6 cut(s)	125, 133, 165, 189, 213, 237
BsrDI	GCAATG	1 cut(s)	301
BssECI	CCNNGG	5 cut(s)	127, 196, 206, 215, 230
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	3 cut(s)	127, 206, 230
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	9 cut(s)	36, 51, 99, 114, 168, 174, 216, 222, 270
Bst4CI	ACNGT	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	4 cut(s)	10, 62, 125, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 339
BstNI	CCWGG	9 cut(s)	36, 51, 99, 114, 168, 174, 216, 222, 270
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	326
BsuRI	GGCC	5 cut(s)	49, 126, 133, 151, 220
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	4 cut(s)	10, 62, 125, 260
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr9I	CCCGGG	1 cut(s)	196
CsiI	ACCWGGT	2 cut(s)	112, 268
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	8 cut(s)	49, 126, 133, 151, 159, 195, 220, 276
CviKI_1	RGCY	8 cut(s)	49, 126, 133, 151, 159, 195, 220, 276
DrdI	GACNNNNNNGTC	3 cut(s)	186, 210, 234
DseDI	GACNNNNNNGTC	3 cut(s)	186, 210, 234
EciI	GGCGGA	5 cut(s)	24, 105, 240, 279, 396
Eco130I	CCWWGG	3 cut(s)	127, 206, 230
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	196
EcoO109I	RGGNCCY	6 cut(s)	47, 95, 170, 188, 203, 212
EcoRII	CCWGG	9 cut(s)	34, 49, 97, 112, 166, 172, 214, 220, 268
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	127, 206, 230
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	3 cut(s)	127, 206, 230
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	129, 302, 304, 387
FatI	CATG	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	4 cut(s)	17, 69, 132, 267
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	2 cut(s)	192, 353
GluI	GCNGC	1 cut(s)	340
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	2 cut(s)	120, 195
HaeIII	GGCC	5 cut(s)	49, 126, 133, 151, 220
HapII	CCGG	5 cut(s)	77, 135, 152, 197, 239
Hin1II	CATG	1 cut(s)	131
HpaII	CCGG	5 cut(s)	77, 135, 152, 197, 239
Hpy166II	GTNNAC	2 cut(s)	110, 371
Hpy8I	GTNNAC	2 cut(s)	110, 371
HpyCH4III	ACNGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 339
Hsp92II	CATG	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	326
MabI	ACCWGGT	2 cut(s)	112, 268
MaeI	CTAG	2 cut(s)	192, 353
MboII	GAAGA	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	135
MspI	CCGG	5 cut(s)	77, 135, 152, 197, 239
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	9 cut(s)	36, 51, 99, 114, 168, 174, 216, 222, 270
MwoI	GCNNNNNNNGC	2 cut(s)	330, 339
NciI	CCSGG	6 cut(s)	78, 135, 153, 197, 198, 240
NcoI	CCATGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	302
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	6 cut(s)	125, 133, 165, 189, 213, 237
PctI	GAATGC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	173
PfoI	TCCNGGA	4 cut(s)	34, 97, 172, 238
PkrI	GCNGC	1 cut(s)	341
PpuMI	RGGWCCY	5 cut(s)	95, 170, 188, 203, 212
Psp5II	RGGWCCY	5 cut(s)	95, 170, 188, 203, 212
Psp6I	CCWGG	9 cut(s)	34, 49, 97, 112, 166, 172, 214, 220, 268
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	9 cut(s)	34, 49, 97, 112, 166, 172, 214, 220, 268
PspN4I	GGNNCC	6 cut(s)	125, 133, 165, 189, 213, 237
PspOMI	GGGCCC	1 cut(s)	131
PspPPI	RGGWCCY	5 cut(s)	95, 170, 188, 203, 212
PstNI	CAGNNNCTG	1 cut(s)	173
SatI	GCNGC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	16, 97, 115, 172, 208, 232, 271, 376, 394
SexAI	ACCWGGT	2 cut(s)	112, 268
SmaI	CCCGGG	1 cut(s)	198
SsiI	CCGC	7 cut(s)	9, 24, 30, 90, 225, 264, 381
SspMI	CTAG	2 cut(s)	192, 353
StyI	CCWWGG	3 cut(s)	127, 206, 230
TaaI	ACNGT	1 cut(s)	183
TseI	GCWGC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	372
TspMI	CCCGGG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	173
XmaI	CCCGGG	1 cut(s)	196
XspI	CTAG	2 cut(s)	192, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.