Rh6AG342000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
54140748 .. 54141278
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG342000.1

Sequence Viewer

Length: 420 bp
ATGCATGGTCCGGGTGGAGGCGGCGGTCCAGGAGGAGGAGGGCCTGGCGGATGGGGTGGAGGGGGAGGACCGGGTGGTTGGGGTGGAGGTCCAGGACCGGGAGGACCGGGAGGGCCGGGAGGACCAGGCTGGGGTCCAGGTCCCGGAGGACCGGGAGGACCAGGTTGGGGTCCAGGTCCTGGAGGACCGTGGGGTCCTGGGCCTCCGGGACCTGGCGGACCTTGGGGTCCGGGATTTGGCGGGGGGTGGTGGGGCGGACCTGGTGGCTTCTTTGGTGGGTTTGGCACTGGCATATGTGAGATGATATCTTCTTGCTTCTACTGCTTGTGTTGCTGTTGTTTGCTAGATGAATGCTTTGGTGGACCTCGTGGCGGATATGGACCTCCTGGAGGACCTGGAGGACCTCCTCCTCCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

12.35

Weight (kDa)

4.65

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 192, 225
AccB7I CCANNNNNTGG 1 cut(s) 179
AciI CCGC 7 cut(s) 21, 24, 48, 216, 240, 255, 372
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 3 cut(s) 41, 113, 200
AsuC2I CCSGG 9 cut(s) 12, 72, 99, 108, 117, 144, 153, 207, 231
BauI CACGAG 1 cut(s) 366
BccI CCATC 1 cut(s) 45
BcnI CCSGG 9 cut(s) 12, 72, 99, 108, 117, 144, 153, 207, 231
BfaI CTAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmiI GGNNCC 6 cut(s) 135, 142, 171, 195, 210, 228
BpmI CTGGAG 3 cut(s) 201, 408, 417
BpuMI CCSGG 9 cut(s) 12, 72, 99, 108, 117, 144, 153, 207, 231
BsaJI CCNNGG 3 cut(s) 188, 197, 221
Bse1I ACTGG 1 cut(s) 292
BseDI CCNNGG 3 cut(s) 188, 197, 221
BseGI GGATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 4 cut(s) 48, 51, 396, 399
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 3 cut(s) 43, 115, 202
BsiSI CCGG 9 cut(s) 11, 71, 98, 107, 116, 144, 152, 206, 230
BslFI GGGAC 2 cut(s) 126, 222
BsmFI GGGAC 2 cut(s) 126, 222
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 3 cut(s) 43, 115, 202
BspACI CCGC 7 cut(s) 21, 24, 48, 216, 240, 255, 372
BspANI GGCC 3 cut(s) 43, 115, 202
BspLI GGNNCC 6 cut(s) 135, 142, 171, 195, 210, 228
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 188, 197, 221
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 188
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 321, 330
BsuRI GGCC 3 cut(s) 43, 115, 202
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 179
CsiI ACCWGGT 2 cut(s) 160, 259
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 43, 115, 129, 202, 267
CviKI_1 RGCY 5 cut(s) 43, 115, 129, 202, 267
DrdI GACNNNNNNGTC 2 cut(s) 192, 225
DseDI GACNNNNNNGTC 2 cut(s) 192, 225
EciI GGCGGA 4 cut(s) 63, 231, 270, 387
Eco130I CCWWGG 1 cut(s) 221
Eco32I GATATC 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoO109I RGGNCCY 7 cut(s) 41, 140, 176, 194, 209, 392, 401
EcoRV GATATC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 293, 295, 378
FaqI GGGAC 2 cut(s) 126, 222
FatI CATG 1 cut(s) 4
FauI CCCGC 1 cut(s) 233
FauNDI CATATG 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 344
GluI GCNGC 1 cut(s) 22
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 3 cut(s) 201, 408, 417
HaeIII GGCC 3 cut(s) 43, 115, 202
HapII CCGG 9 cut(s) 11, 71, 98, 107, 116, 144, 152, 206, 230
Hin1II CATG 1 cut(s) 8
HpaII CCGG 9 cut(s) 11, 71, 98, 107, 116, 144, 152, 206, 230
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 419
Hpy8I GTNNAC 1 cut(s) 362
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 330
Hsp92II CATG 1 cut(s) 8
MabI ACCWGGT 2 cut(s) 160, 259
MaeI CTAG 1 cut(s) 344
MboII GAAGA 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 9 cut(s) 11, 71, 98, 107, 116, 144, 152, 206, 230
Mva1269I GAATGC 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 321, 330
NciI CCSGG 9 cut(s) 12, 72, 99, 108, 117, 144, 153, 207, 231
NdeI CATATG 1 cut(s) 293
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 6 cut(s) 135, 142, 171, 195, 210, 228
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 179
PfoI TCCNGGA 7 cut(s) 28, 91, 142, 178, 205, 229, 385
PkrI GCNGC 1 cut(s) 23
PpuMI RGGWCCY 6 cut(s) 140, 176, 194, 209, 392, 401
Psp5II RGGWCCY 6 cut(s) 140, 176, 194, 209, 392, 401
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 6 cut(s) 135, 142, 171, 195, 210, 228
PspPPI RGGWCCY 6 cut(s) 140, 176, 194, 209, 392, 401
PstNI CAGNNNCTG 1 cut(s) 179
SatI GCNGC 1 cut(s) 22
SexAI ACCWGGT 2 cut(s) 160, 259
SsiI CCGC 7 cut(s) 21, 24, 48, 216, 240, 255, 372
SspMI CTAG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 189
TauI GCSGC 1 cut(s) 24
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 387
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.