pycom11g26250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005173
Physical Location & Seq
Reverse (-)
28852130 .. 28852761
632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g26250.1

Sequence Viewer

Length: 354 bp
ATGGGGCCTGGAGGACCTGGTGGAGGAGGAGGACCGGGTGGTGGAGGTGGTTGGGGAGGCCCAGGTGGTGGTGGTCCGGGAGGAGGTGGATGGGGAGGCCCTGGGCCTGGAGGACCTGGCGGATGGGGTGGCCCTGGGCCTGGAGGACCTGGTGGCTGGGGCCCTGGCCCGGGAGGCCCTTGGGGTCCTGGTTTCATGGGAGGACCTGGCTTTTTTGGAGGGTTTGCTGATGGGTTATGCAGCATGATATCTTCTTGCTTCTACTGCTTGTGCTGCTGTGGTTTGCTGCAGGAATGCTTCGGCGGCGGTCCTCGTGGTGGATTTGGTCCTCCCGGAGGTGGCCCTCCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

10.24

Weight (kDa)

4.37

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AciI CCGC 3 cut(s) 120, 303, 306
Ama87I CYCGRG 1 cut(s) 169
ApaI GGGCCC 1 cut(s) 164
ApeKI GCWGC 3 cut(s) 240, 273, 286
AsuC2I CCSGG 5 cut(s) 36, 78, 170, 171, 333
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 9 cut(s) 14, 32, 74, 113, 146, 185, 203, 308, 326
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 164
BauI CACGAG 1 cut(s) 312
BbvI GCAGC 3 cut(s) 252, 260, 273
BccI CCATC 3 cut(s) 84, 117, 224
BcnI CCSGG 5 cut(s) 36, 78, 170, 171, 333
BfmI CTRYAG 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 4 cut(s) 241, 274, 287, 304
BlsI GCNGC 4 cut(s) 242, 275, 288, 305
Bme18I GGWCC 9 cut(s) 14, 32, 74, 113, 146, 185, 203, 308, 326
BmeT110I CYCGRG 1 cut(s) 169
BmiI GGNNCC 4 cut(s) 6, 161, 162, 186
BpmI CTGGAG 3 cut(s) 30, 129, 162
BpuMI CCSGG 5 cut(s) 36, 78, 170, 171, 333
BsaJI CCNNGG 8 cut(s) 61, 100, 101, 133, 134, 163, 169, 179
BseDI CCNNGG 8 cut(s) 61, 100, 101, 133, 134, 163, 169, 179
BseGI GGATG 2 cut(s) 95, 128
BseRI GAGGAG 3 cut(s) 39, 42, 96
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 3 cut(s) 252, 260, 273
BseYI CCCAGC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 4 cut(s) 35, 77, 170, 333
BsmI GAATGC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 169
Bsp120I GGGCCC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 164
BspACI CCGC 3 cut(s) 120, 303, 306
BspLI GGNNCC 4 cut(s) 6, 161, 162, 186
BspMAI CTGCAG 1 cut(s) 291
BssECI CCNNGG 8 cut(s) 61, 100, 101, 133, 134, 163, 169, 179
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 312
BstENI CCTNNNNNAGG 2 cut(s) 21, 333
BstF5I GGATG 2 cut(s) 95, 128
BstMWI GCNNNNNNNGC 4 cut(s) 174, 264, 273, 303
BstSFI CTRYAG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 252, 260, 273
BtsCI GGATG 2 cut(s) 95, 128
Cfr9I CCCGGG 1 cut(s) 169
CsiI ACCWGGT 2 cut(s) 16, 148
CviAII CATG 2 cut(s) 196, 244
EciI GGCGGA 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 9 cut(s) 14, 32, 74, 113, 146, 185, 203, 308, 326
Eco88I CYCGRG 1 cut(s) 169
EcoNI CCTNNNNNAGG 2 cut(s) 21, 333
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 199, 247
FaiI YATR 3 cut(s) 197, 238, 245
FatI CATG 2 cut(s) 195, 243
Fnu4HI GCNGC 4 cut(s) 241, 274, 287, 304
FokI GGATG 2 cut(s) 102, 135
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 241, 274, 287, 304
GluI GCNGC 4 cut(s) 241, 274, 287, 304
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 3 cut(s) 30, 129, 162
HapII CCGG 4 cut(s) 35, 77, 170, 333
Hin1II CATG 2 cut(s) 199, 247
HpaII CCGG 4 cut(s) 35, 77, 170, 333
Hpy188I TCNGA 1 cut(s) 353
HpyCH4V TGCA 2 cut(s) 240, 289
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 264, 273, 303
Hsp92II CATG 2 cut(s) 199, 247
Lsp1109I GCAGC 3 cut(s) 252, 260, 273
MabI ACCWGGT 2 cut(s) 16, 148
MboII GAAGA 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 164
MspI CCGG 4 cut(s) 35, 77, 170, 333
Mva1269I GAATGC 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 174, 264, 273, 303
NciI CCSGG 5 cut(s) 36, 78, 170, 171, 333
NlaIII CATG 2 cut(s) 199, 247
NlaIV GGNNCC 4 cut(s) 6, 161, 162, 186
PasI CCCWGGG 2 cut(s) 101, 134
PctI GAATGC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 68
PfoI TCCNGGA 2 cut(s) 76, 331
PkrI GCNGC 4 cut(s) 242, 275, 288, 305
PpuMI RGGWCCY 5 cut(s) 14, 113, 146, 185, 203
Psp5II RGGWCCY 5 cut(s) 14, 113, 146, 185, 203
PspFI CCCAGC 1 cut(s) 156
PspN4I GGNNCC 4 cut(s) 6, 161, 162, 186
PspOMI GGGCCC 1 cut(s) 160
PspPPI RGGWCCY 5 cut(s) 14, 113, 146, 185, 203
PstI CTGCAG 1 cut(s) 291
SatI GCNGC 4 cut(s) 241, 274, 287, 304
SduI GDGCHC 1 cut(s) 164
SetI ASST 8 cut(s) 19, 49, 67, 88, 118, 151, 208, 340
SexAI ACCWGGT 2 cut(s) 16, 148
SfcI CTRYAG 1 cut(s) 287
SfiI GGCCNNNNNGGCC 1 cut(s) 174
SinI GGWCC 9 cut(s) 14, 32, 74, 113, 146, 185, 203, 308, 326
SmaI CCCGGG 1 cut(s) 171
SsiI CCGC 3 cut(s) 120, 303, 306
StyI CCWWGG 1 cut(s) 179
TauI GCSGC 1 cut(s) 306
TseI GCWGC 3 cut(s) 240, 273, 286
TspDTI ATGAA 1 cut(s) 184
TspMI CCCGGG 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 9 cut(s) 14, 32, 74, 113, 146, 185, 203, 308, 326
XagI CCTNNNNNAGG 2 cut(s) 21, 333
XmaI CCCGGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.