Prupe.8G253200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0005173
Physical Location & Seq
Reverse (-)
21678521 .. 21680346
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G253200.1

Sequence Viewer

Length: 363 bp
ATGGGACCTGGCGGACCTGGCGGACCTGGCGGACCTGGCGGTGGAGGTGGAGGGCCAGGAGGAGGTGGCTGGGGAGGCCCTGGGCCTGGAGGACCTGGTGGCTGGGGAGGCCCTGGACCTGGAGGACCTGGTGGCTGGGGAGGCCCGGGACCTGGAGGACCTGGTGGCTGGGGCCCCGGGCCTGGGGGGCCATGGGGTGGCGGTGGTTTCTGGGGTGGACCTGGCTTTTTTGGGGGGTTTGGTGATGGATTATGCAACCTGGTATCTTCTTGCTTCTACTGCTTGTGCTGCTGTGGTTTGCTCCAAGAATGCTTTGGCGGCCCTCGTGGCGGATATGGTCCTCCCGGACCTCCTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

10.58

Weight (kDa)

4.37

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 7 cut(s) 12, 21, 30, 39, 201, 318, 330
AfiI CCNNNNNNNGG 9 cut(s) 41, 62, 86, 119, 152, 182, 183, 197, 329
Ama87I CYCGRG 2 cut(s) 145, 176
AoxI GGCC 9 cut(s) 53, 76, 83, 109, 142, 172, 179, 188, 319
ApaI GGGCCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 288
AsuC2I CCSGG 5 cut(s) 146, 147, 177, 178, 345
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 2 cut(s) 145, 176
BaeGI GKGCMC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 176
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 239
BcnI CCSGG 5 cut(s) 146, 147, 177, 178, 345
BglI GCCNNNNNGGC 2 cut(s) 187, 327
BisI GCNGC 2 cut(s) 289, 319
BlsI GCNGC 2 cut(s) 290, 320
BmeT110I CYCGRG 2 cut(s) 145, 176
BmiI GGNNCC 6 cut(s) 6, 150, 173, 174, 175, 189
BpmI CTGGAG 3 cut(s) 108, 141, 174
BpuMI CCSGG 5 cut(s) 146, 147, 177, 178, 345
BsaJI CCNNGG 8 cut(s) 79, 80, 112, 145, 175, 176, 182, 191
Bsc4I CCNNNNNNNGG 9 cut(s) 41, 62, 86, 119, 152, 182, 183, 197, 329
BseDI CCNNGG 8 cut(s) 79, 80, 112, 145, 175, 176, 182, 191
BseLI CCNNNNNNNGG 9 cut(s) 41, 62, 86, 119, 152, 182, 183, 197, 329
BseRI GAGGAG 2 cut(s) 75, 342
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 1 cut(s) 275
BseYI CCCAGC 4 cut(s) 69, 102, 135, 168
BshFI GGCC 9 cut(s) 55, 78, 85, 111, 144, 174, 181, 190, 321
BsiHKCI CYCGRG 2 cut(s) 145, 176
BsiSI CCGG 3 cut(s) 146, 177, 345
BslFI GGGAC 2 cut(s) 18, 162
BslI CCNNNNNNNGG 9 cut(s) 41, 62, 86, 119, 152, 182, 183, 197, 329
BsmFI GGGAC 2 cut(s) 18, 162
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 9 cut(s) 55, 78, 85, 111, 144, 174, 181, 190, 321
BsoBI CYCGRG 2 cut(s) 145, 176
Bsp120I GGGCCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 176
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 7 cut(s) 12, 21, 30, 39, 201, 318, 330
BspANI GGCC 9 cut(s) 55, 78, 85, 111, 144, 174, 181, 190, 321
BspLI GGNNCC 6 cut(s) 6, 150, 173, 174, 175, 189
BssECI CCNNGG 8 cut(s) 79, 80, 112, 145, 175, 176, 182, 191
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 9 cut(s) 55, 78, 85, 111, 144, 174, 181, 190, 321
BtgI CCRYGG 1 cut(s) 191
Cfr9I CCCGGG 2 cut(s) 145, 176
CsiI ACCWGGT 4 cut(s) 94, 127, 160, 258
CviAII CATG 1 cut(s) 192
EciI GGCGGA 4 cut(s) 27, 36, 45, 345
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 145, 176
EcoO109I RGGNCCY 9 cut(s) 5, 77, 92, 110, 125, 149, 158, 172, 173
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 193, 253, 336
FaqI GGGAC 2 cut(s) 18, 162
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 289, 319
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 289, 319
GluI GCNGC 2 cut(s) 289, 319
GsaI CCCAGC 4 cut(s) 73, 106, 139, 172
GsuI CTGGAG 3 cut(s) 108, 141, 174
HaeIII GGCC 9 cut(s) 55, 78, 85, 111, 144, 174, 181, 190, 321
HapII CCGG 3 cut(s) 146, 177, 345
Hin1II CATG 1 cut(s) 195
HpaII CCGG 3 cut(s) 146, 177, 345
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 255
Hsp92II CATG 1 cut(s) 195
LmnI GCTCC 1 cut(s) 306
Lsp1109I GCAGC 1 cut(s) 275
MabI ACCWGGT 4 cut(s) 94, 127, 160, 258
MboII GAAGA 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 176
MspI CCGG 3 cut(s) 146, 177, 345
Mva1269I GAATGC 1 cut(s) 314
NciI CCSGG 5 cut(s) 146, 147, 177, 178, 345
NcoI CCATGG 1 cut(s) 191
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 6 cut(s) 6, 150, 173, 174, 175, 189
PasI CCCWGGG 1 cut(s) 80
PctI GAATGC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 2 cut(s) 290, 320
PpuMI RGGWCCY 5 cut(s) 5, 92, 125, 149, 158
Psp5II RGGWCCY 5 cut(s) 5, 92, 125, 149, 158
PspFI CCCAGC 4 cut(s) 69, 102, 135, 168
PspN4I GGNNCC 6 cut(s) 6, 150, 173, 174, 175, 189
PspOMI GGGCCC 1 cut(s) 172
PspPPI RGGWCCY 5 cut(s) 5, 92, 125, 149, 158
SatI GCNGC 2 cut(s) 289, 319
SduI GDGCHC 1 cut(s) 176
SexAI ACCWGGT 4 cut(s) 94, 127, 160, 258
SfiI GGCCNNNNNGGCC 1 cut(s) 187
SmaI CCCGGG 2 cut(s) 147, 178
SsiI CCGC 7 cut(s) 12, 21, 30, 39, 201, 318, 330
StyI CCWWGG 1 cut(s) 191
TauI GCSGC 1 cut(s) 321
TseI GCWGC 1 cut(s) 288
TspMI CCCGGG 2 cut(s) 145, 176
Van91I CCANNNNNTGG 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmaI CCCGGG 2 cut(s) 145, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.