MD03G1276800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0005173
Physical Location & Seq
Forward (+)
35945050 .. 35946688
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1276800.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGATCCTGGAGGACCTGGTGGAGGAGGACCGGGCGGTGGCGGTCCAGGAGGAGGTGGCTGGGGAGGCCCAGGCGGAGGTGGCTGGGGAGGCCCAGGCGGTGGTGGCTGGGGAGGCCCAGGCGGTGGTGGATGGGGAGGCCCTGGGCCTGGAGGACCTGGTGGATGGGGCAGCCCTGGAGGATGGGGCGGCCCTGGTGGATGGGGCGGCCATGGACCTGGGGGACCTGGCGGATGGGGGCCAGGGCCTGGGGGACCCGGTGGATGGGGACCCTTGCCTGGAGGACCTGGTGGCTGGGGCTTTGGCATGGGAGGCCCTTGGGGTCTTGGTTTCATGGGAGGAGGACCTGGCTTTTTTGGAGGGTTTGCTGATGGATTATGCAGCATGATATCTTCTTGCTTCTACTTCTTGTGCTGCTGCGGTTTGCTGCATGAATGCTTCGGCGGAGGTCCTCATGGTGGATATGGACCTCCAGGAGGACCACCTCCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

14.48

Weight (kDa)

5.11

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 101, 125, 248
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 208
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 248
ApeKI GCWGC 5 cut(s) 171, 381, 414, 417, 427
AsuC2I CCSGG 2 cut(s) 33, 258
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 5 cut(s) 183, 393, 401, 404, 414
BccI CCATC 7 cut(s) 126, 159, 177, 195, 228, 258, 365
BcnI CCSGG 2 cut(s) 33, 258
BisI GCNGC 7 cut(s) 172, 190, 208, 382, 415, 418, 428
BlsI GCNGC 7 cut(s) 173, 191, 209, 383, 416, 419, 429
BmiI GGNNCC 7 cut(s) 6, 225, 240, 255, 256, 270, 271
BpmI CTGGAG 5 cut(s) 30, 171, 198, 300, 456
BpuMI CCSGG 2 cut(s) 33, 258
BseGI GGATG 6 cut(s) 137, 170, 188, 206, 239, 269
BseRI GAGGAG 3 cut(s) 39, 66, 354
BseXI GCAGC 5 cut(s) 183, 393, 401, 404, 414
BseYI CCCAGC 4 cut(s) 60, 84, 108, 294
BsiSI CCGG 2 cut(s) 32, 258
BslFI GGGAC 3 cut(s) 237, 267, 282
BsmFI GGGAC 3 cut(s) 237, 267, 282
BsmI GAATGC 1 cut(s) 440
Bsp143I GATC 1 cut(s) 4
Bsp19I CCATGG 1 cut(s) 211
BspLI GGNNCC 7 cut(s) 6, 225, 240, 255, 256, 270, 271
BspPI GGATC 1 cut(s) 12
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 2 cut(s) 211, 317
BstDSI CCRYGG 1 cut(s) 211
BstENI CCTNNNNNAGG 2 cut(s) 21, 474
BstF5I GGATG 6 cut(s) 137, 170, 188, 206, 239, 269
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 6 cut(s) 66, 81, 90, 105, 114, 312
BstV1I GCAGC 5 cut(s) 183, 393, 401, 404, 414
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 6 cut(s) 137, 170, 188, 206, 239, 269
CaiI CAGNNNCTG 1 cut(s) 248
CsiI ACCWGGT 3 cut(s) 16, 157, 286
CviAII CATG 6 cut(s) 212, 307, 334, 385, 431, 455
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 208
EciI GGCGGA 3 cut(s) 90, 246, 459
Eco130I CCWWGG 2 cut(s) 211, 317
Eco32I GATATC 1 cut(s) 390
EcoNI CCTNNNNNAGG 2 cut(s) 21, 474
EcoRV GATATC 1 cut(s) 390
EcoT14I CCWWGG 2 cut(s) 211, 317
ErhI CCWWGG 2 cut(s) 211, 317
FaeI CATG 6 cut(s) 215, 310, 337, 388, 434, 458
FaiI YATR 8 cut(s) 213, 308, 335, 379, 386, 432, 456, 465
FaqI GGGAC 3 cut(s) 237, 267, 282
FatI CATG 6 cut(s) 211, 306, 333, 384, 430, 454
Fnu4HI GCNGC 7 cut(s) 172, 190, 208, 382, 415, 418, 428
FokI GGATG 6 cut(s) 144, 177, 195, 213, 246, 276
Fsp4HI GCNGC 7 cut(s) 172, 190, 208, 382, 415, 418, 428
GluI GCNGC 7 cut(s) 172, 190, 208, 382, 415, 418, 428
GsaI CCCAGC 4 cut(s) 64, 88, 112, 298
GsuI CTGGAG 5 cut(s) 30, 171, 198, 300, 456
HapII CCGG 2 cut(s) 32, 258
Hin1II CATG 6 cut(s) 215, 310, 337, 388, 434, 458
HpaII CCGG 2 cut(s) 32, 258
HpyCH4V TGCA 2 cut(s) 381, 430
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 81, 90, 105, 114, 312
Hsp92II CATG 6 cut(s) 215, 310, 337, 388, 434, 458
KflI GGGWCCC 2 cut(s) 254, 269
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 183, 393, 401, 404, 414
MabI ACCWGGT 3 cut(s) 16, 157, 286
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 384
MflI RGATCY 1 cut(s) 4
MspI CCGG 2 cut(s) 32, 258
Mva1269I GAATGC 1 cut(s) 440
MwoI GCNNNNNNNGC 6 cut(s) 66, 81, 90, 105, 114, 312
NciI CCSGG 2 cut(s) 33, 258
NcoI CCATGG 1 cut(s) 211
NdeII GATC 1 cut(s) 4
NlaIII CATG 6 cut(s) 215, 310, 337, 388, 434, 458
NlaIV GGNNCC 7 cut(s) 6, 225, 240, 255, 256, 270, 271
PasI CCCWGGG 1 cut(s) 143
PctI GAATGC 1 cut(s) 440
PflMI CCANNNNNTGG 3 cut(s) 101, 125, 248
PfoI TCCNGGA 3 cut(s) 7, 46, 472
PkrI GCNGC 7 cut(s) 173, 191, 209, 383, 416, 419, 429
PpuMI RGGWCCY 8 cut(s) 14, 155, 224, 254, 269, 284, 344, 449
Psp5II RGGWCCY 8 cut(s) 14, 155, 224, 254, 269, 284, 344, 449
PspFI CCCAGC 4 cut(s) 60, 84, 108, 294
PspN4I GGNNCC 7 cut(s) 6, 225, 240, 255, 256, 270, 271
PspPPI RGGWCCY 8 cut(s) 14, 155, 224, 254, 269, 284, 344, 449
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 7 cut(s) 172, 190, 208, 382, 415, 418, 428
Sau3AI GATC 1 cut(s) 4
SexAI ACCWGGT 3 cut(s) 16, 157, 286
StyI CCWWGG 2 cut(s) 211, 317
TauI GCSGC 2 cut(s) 192, 210
TseI GCWGC 5 cut(s) 171, 381, 414, 417, 427
TspDTI ATGAA 2 cut(s) 322, 447
Van91I CCANNNNNTGG 3 cut(s) 101, 125, 248
XagI CCTNNNNNAGG 2 cut(s) 21, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.