Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Forward (+)

14463846 .. 14464407

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAATGGCGGAGGTGGAGGCGGCGGTCCAGGAGGAGGAGGGCCTGGTGGATGGGGTGGAGGGGGAGGGCCGGGTGGTTGGGGCGGAGGGCATGGAGGGGGAGGGCCGGGTGGTTGGGGTGGAGGTCCTGGAGGGGGTGGACCTGGTGGATGGGGCCATGGGCCAGGAGGACCGGGAGGGCCGGGAGGCTGGGGTCCAGGTCCTGGCGGACCATGGGGTCCTGGCCCGGGAGGACCTTGGGGTCCTGGGCCTGGCGGAGCTTGGGGTCCGGGATTTGGCGGGGGATGGTGGGGTGGACCTGGTGGCTTCTTTGGTGGGTTTGGCAATGGCATATGTGAGATACTATCTTCTTGCTTCTACTGCTTGTGCTGCTGTTGTTTGCTAGATGAATGCTTCGGTGGACCTCGTGGCGGATATGGACCTCCTGGAGGACCTCCTCCTCGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

13.18

Weight (kDa)

5.97

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	216, 240
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	8 cut(s)	9, 21, 24, 84, 207, 255, 279, 411
AfiI	CCNNNNNNNGG	8 cut(s)	35, 134, 203, 227, 251, 275, 410, 428
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	8 cut(s)	41, 68, 104, 154, 161, 179, 223, 248
ApeKI	GCWGC	1 cut(s)	369
AsuC2I	CCSGG	7 cut(s)	72, 108, 174, 183, 227, 228, 270
AvaI	CYCGRG	1 cut(s)	226
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	3 cut(s)	45, 144, 279
BcnI	CCSGG	7 cut(s)	72, 108, 174, 183, 227, 228, 270
BfaI	CTAG	1 cut(s)	383
BisI	GCNGC	2 cut(s)	22, 370
BlsI	GCNGC	2 cut(s)	23, 371
BmeT110I	CYCGRG	1 cut(s)	226
BmiI	GGNNCC	5 cut(s)	155, 195, 219, 243, 267
BpmI	CTGGAG	2 cut(s)	150, 447
BpuMI	CCSGG	7 cut(s)	72, 108, 174, 183, 227, 228, 270
BsaJI	CCNNGG	5 cut(s)	157, 212, 226, 236, 245
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 134, 203, 227, 251, 275, 410, 428
Bse3DI	GCAATG	1 cut(s)	331
BseDI	CCNNGG	5 cut(s)	157, 212, 226, 236, 245
BseGI	GGATG	3 cut(s)	56, 155, 290
BseLI	CCNNNNNNNGG	8 cut(s)	35, 134, 203, 227, 251, 275, 410, 428
BseMI	GCAATG	1 cut(s)	331
BseRI	GAGGAG	4 cut(s)	48, 51, 426, 429
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	8 cut(s)	43, 70, 106, 156, 163, 181, 225, 250
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	6 cut(s)	71, 107, 173, 182, 227, 269
BslI	CCNNNNNNNGG	8 cut(s)	35, 134, 203, 227, 251, 275, 410, 428
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	8 cut(s)	43, 70, 106, 156, 163, 181, 225, 250
BsoBI	CYCGRG	1 cut(s)	226
Bsp19I	CCATGG	2 cut(s)	157, 212
BspACI	CCGC	8 cut(s)	9, 21, 24, 84, 207, 255, 279, 411
BspANI	GGCC	8 cut(s)	43, 70, 106, 156, 163, 181, 225, 250
BspLI	GGNNCC	5 cut(s)	155, 195, 219, 243, 267
BsrDI	GCAATG	1 cut(s)	331
BssECI	CCNNGG	5 cut(s)	157, 212, 226, 236, 245
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	3 cut(s)	157, 212, 236
Bst2BI	CACGAG	1 cut(s)	405
BstDSI	CCRYGG	2 cut(s)	157, 212
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	56, 155, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 369
BstV1I	GCAGC	1 cut(s)	356
BsuRI	GGCC	8 cut(s)	43, 70, 106, 156, 163, 181, 225, 250
BtgI	CCRYGG	2 cut(s)	157, 212
BtsCI	GGATG	3 cut(s)	56, 155, 290
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr9I	CCCGGG	1 cut(s)	226
CsiI	ACCWGGT	2 cut(s)	142, 298
CviAII	CATG	3 cut(s)	92, 158, 213
DrdI	GACNNNNNNGTC	2 cut(s)	216, 240
DseDI	GACNNNNNNGTC	2 cut(s)	216, 240
EciI	GGCGGA	5 cut(s)	24, 99, 222, 270, 426
Eco130I	CCWWGG	3 cut(s)	157, 212, 236
Eco88I	CYCGRG	1 cut(s)	226
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	7 cut(s)	41, 125, 200, 218, 233, 242, 431
EcoT14I	CCWWGG	3 cut(s)	157, 212, 236
ErhI	CCWWGG	3 cut(s)	157, 212, 236
FaeI	CATG	3 cut(s)	95, 161, 216
FaiI	YATR	6 cut(s)	93, 159, 214, 332, 334, 417
FatI	CATG	3 cut(s)	91, 157, 212
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	1 cut(s)	332
Fnu4HI	GCNGC	2 cut(s)	22, 370
FokI	GGATG	3 cut(s)	63, 162, 297
Fsp4HI	GCNGC	2 cut(s)	22, 370
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	2 cut(s)	22, 370
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	150, 447
HaeIII	GGCC	8 cut(s)	43, 70, 106, 156, 163, 181, 225, 250
HapII	CCGG	6 cut(s)	71, 107, 173, 182, 227, 269
Hin1II	CATG	3 cut(s)	95, 161, 216
HpaII	CCGG	6 cut(s)	71, 107, 173, 182, 227, 269
Hpy166II	GTNNAC	3 cut(s)	140, 296, 401
Hpy8I	GTNNAC	3 cut(s)	140, 296, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 369
Hsp92II	CATG	3 cut(s)	95, 161, 216
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	356
MabI	ACCWGGT	2 cut(s)	142, 298
MaeI	CTAG	1 cut(s)	383
MboII	GAAGA	1 cut(s)	339
MspI	CCGG	6 cut(s)	71, 107, 173, 182, 227, 269
Mva1269I	GAATGC	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	360, 369
NciI	CCSGG	7 cut(s)	72, 108, 174, 183, 227, 228, 270
NcoI	CCATGG	2 cut(s)	157, 212
NdeI	CATATG	1 cut(s)	332
NlaIII	CATG	3 cut(s)	95, 161, 216
NlaIV	GGNNCC	5 cut(s)	155, 195, 219, 243, 267
PctI	GAATGC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	4 cut(s)	28, 127, 268, 424
PkrI	GCNGC	2 cut(s)	23, 371
PpuMI	RGGWCCY	6 cut(s)	125, 200, 218, 233, 242, 431
Psp5II	RGGWCCY	6 cut(s)	125, 200, 218, 233, 242, 431
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	5 cut(s)	155, 195, 219, 243, 267
PspPPI	RGGWCCY	6 cut(s)	125, 200, 218, 233, 242, 431
PstNI	CAGNNNCTG	1 cut(s)	203
SatI	GCNGC	2 cut(s)	22, 370
SexAI	ACCWGGT	2 cut(s)	142, 298
SmaI	CCCGGG	1 cut(s)	228
SsiI	CCGC	8 cut(s)	9, 21, 24, 84, 207, 255, 279, 411
SspMI	CTAG	1 cut(s)	383
StyI	CCWWGG	3 cut(s)	157, 212, 236
TauI	GCSGC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	17, 402
TspMI	CCCGGG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	426
XmaI	CCCGGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.